BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0071.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00128261.1| COG3842: ABC-type spermidine/putrescine trans... 304 2e-81 ref|NP_793653.1| polyamine ABC transporter, ATP-binding protein,... 303 5e-81 ref|ZP_00084638.1| COG3842: ABC-type spermidine/putrescine trans... 303 6e-81 ref|NP_251944.1| probable ATP-binding component of ABC transport... 292 7e-78 ref|NP_799860.1| putative ATP-binding component of ABC transport... 291 1e-77 >ref|ZP_00128261.1| COG3842: ABC-type spermidine/putrescine transport systems, ATPase components [Pseudomonas syringae pv. syringae B728a] Length = 329 Score = 304 bits (779), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 163/329 (49%), Positives = 217/329 (65%), Gaps = 15/329 (4%) Query: 18 YLKLQGIRKRFGDVPVLAGVDLNIGEGELVTLLGPSGCGKSTLLRCIAGLTELDSGSILL 77 ++ ++ ++K + V + ++ +I +GE VTLLGPSGCGKSTLLRCIAGLT ++SG ILL Sbjct: 3 FVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILL 62 Query: 78 ADKELTKLPPRSRDVGMVFQSYALFPNLTVRQNVEYGMRMRGVAPAARRSRCEELLALVD 137 +L L P+ R++GMVFQSYALFPN+TV QNV +G+R++ V+ R E+L +V+ Sbjct: 63 DGSDLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRIQKVSADESTRRVAEILRMVE 122 Query: 138 LEDKRDVYPQSLSGGQQQRVALARSLAVQPKXXXXXXXXXXXXXKIRKNLRAEIRDIQRR 197 L D YP LSGGQ QRVALARSL +P+ +IRKNLR +IR IQR Sbjct: 123 LHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRE 182 Query: 198 LGMTTLFVTHDQEEALILSDRICIMNQGRMVQEGSPEQLYTAPRTEFAARFMGSYNVFNR 257 LG+TT+FVTHDQEEAL +SDRI +MNQGR+VQ G E LYTAP FAA F+G+YN+ Sbjct: 183 LGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEA 242 Query: 258 AEALKLFRR-IDSRSDRFAIRPEAVTLLAEGEAIQDDADGMMDVRGQVQAVSILGNIIRA 316 +A +L +R I+S R AIRPE++ L GE + G++++ S+LGN+IR Sbjct: 243 DDATRLMQRPINS---RVAIRPESIQLSLTGE-----------LEGEIRSHSLLGNVIRY 288 Query: 317 AVVAEGVHLTVDLLNDGRWLRVREGDRVT 345 V A GV L VD+LN +G RVT Sbjct: 289 RVQARGVKLVVDVLNRSADDLHPDGRRVT 317 >ref|NP_793653.1| polyamine ABC transporter, ATP-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO57348.1| polyamine ABC transporter, ATP-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 329 Score = 303 bits (775), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 162/328 (49%), Positives = 213/328 (64%), Gaps = 13/328 (3%) Query: 18 YLKLQGIRKRFGDVPVLAGVDLNIGEGELVTLLGPSGCGKSTLLRCIAGLTELDSGSILL 77 ++ ++ ++K + V + ++ I +GE VTLLGPSGCGKSTLLRCIAGLT ++SG ILL Sbjct: 3 FVSIENLQKSYASTSVFSDINCRIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILL 62 Query: 78 ADKELTKLPPRSRDVGMVFQSYALFPNLTVRQNVEYGMRMRGVAPAARRSRCEELLALVD 137 +L L P+ R++GMVFQSYALFPN+TV QNV +G+RM+ V+ R E+L +V+ Sbjct: 63 DGNDLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRMQKVSADDSERRVAEILRMVE 122 Query: 138 LEDKRDVYPQSLSGGQQQRVALARSLAVQPKXXXXXXXXXXXXXKIRKNLRAEIRDIQRR 197 L D YP LSGGQ QRVALARSL +P+ +IRK LR +IR IQR Sbjct: 123 LHDFAKRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKLLREQIRAIQRE 182 Query: 198 LGMTTLFVTHDQEEALILSDRICIMNQGRMVQEGSPEQLYTAPRTEFAARFMGSYNVFNR 257 LG+TT+FVTHDQEEAL +SDRI +MNQGR+VQ G E LYTAP FAA F+G+YN+ Sbjct: 183 LGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEA 242 Query: 258 AEALKLFRRIDSRSDRFAIRPEAVTLLAEGEAIQDDADGMMDVRGQVQAVSILGNIIRAA 317 +A +L +R + R AIRPE++ L GE + GQV++ S+LGN+IR Sbjct: 243 EDATRLMQR--PIASRIAIRPESIQLSLTGE-----------LEGQVRSHSLLGNVIRYR 289 Query: 318 VVAEGVHLTVDLLNDGRWLRVREGDRVT 345 + A GV L VD+LN +G RVT Sbjct: 290 IQARGVDLVVDVLNRSAEDLHPDGRRVT 317 >ref|ZP_00084638.1| COG3842: ABC-type spermidine/putrescine transport systems, ATPase components [Pseudomonas fluorescens PfO-1] Length = 329 Score = 303 bits (775), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 162/314 (51%), Positives = 206/314 (65%), Gaps = 13/314 (4%) Query: 18 YLKLQGIRKRFGDVPVLAGVDLNIGEGELVTLLGPSGCGKSTLLRCIAGLTELDSGSILL 77 Y+ +Q ++K + V + ++ I +GE VTLLGPSGCGKSTLLRCIAGLT +D G ILL Sbjct: 3 YVSVQHLQKNYAGTTVFSDINCEIQKGEFVTLLGPSGCGKSTLLRCIAGLTPVDGGKILL 62 Query: 78 ADKELTKLPPRSRDVGMVFQSYALFPNLTVRQNVEYGMRMRGVAPAARRSRCEELLALVD 137 ++ L P+ R +GMVFQSYALFPN+TV QNV +G+RM+ V R E+L LV+ Sbjct: 63 DGVDIVPLTPQKRGIGMVFQSYALFPNMTVEQNVAFGLRMQKVNADDSHKRVAEVLKLVE 122 Query: 138 LEDKRDVYPQSLSGGQQQRVALARSLAVQPKXXXXXXXXXXXXXKIRKNLRAEIRDIQRR 197 L D YP LSGGQ QRVALARSL +P+ +IRK+LR +IR IQR Sbjct: 123 LNDFASRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKHLREQIRQIQRE 182 Query: 198 LGMTTLFVTHDQEEALILSDRICIMNQGRMVQEGSPEQLYTAPRTEFAARFMGSYNVFNR 257 LG+TT+FVTHDQEEAL +SDRI +MNQG++VQ G E LYTAP FAA F+G+YN+ + Sbjct: 183 LGLTTIFVTHDQEEALTMSDRIFLMNQGKIVQSGDAETLYTAPVDVFAAGFIGNYNLLDA 242 Query: 258 AEALKLFRRIDSRSDRFAIRPEAVTLLAEGEAIQDDADGMMDVRGQVQAVSILGNIIRAA 317 A KL +R + R AIRPEA+ L GE DA Q+++ S+LGN+IR Sbjct: 243 ESASKLLQR--PINHRIAIRPEAIELSLSGEP---DA--------QIRSHSLLGNVIRYR 289 Query: 318 VVAEGVHLTVDLLN 331 V A GV L VD+LN Sbjct: 290 VEARGVELVVDVLN 303 >ref|NP_251944.1| probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PA01] pir||H83240 probable ATP-binding component of ABC transporter PA3254 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06642.1| probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1] Length = 331 Score = 292 bits (748), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 157/315 (49%), Positives = 209/315 (66%), Gaps = 11/315 (3%) Query: 17 DYLKLQGIRKRFGDVPVLAGVDLNIGEGELVTLLGPSGCGKSTLLRCIAGLTELDSGSIL 76 ++ ++ + K +G + +D GE VTLLGPSGCGKSTLLRCIAGLTE+DSG IL Sbjct: 2 SFVSVEQLDKSYGATSIFRDIDFAAARGEFVTLLGPSGCGKSTLLRCIAGLTEVDSGRIL 61 Query: 77 LADKELTKLPPRSRDVGMVFQSYALFPNLTVRQNVEYGMRMRGVAPAARRSRCEELLALV 136 + +++ LPP+ R + MVFQSYALFPN+TV+QNV +G+RM+ V A + R E + LV Sbjct: 62 IDGEDVVPLPPQKRGIAMVFQSYALFPNMTVQQNVAFGLRMQKVPAAELKQRVAEAIELV 121 Query: 137 DLEDKRDVYPQSLSGGQQQRVALARSLAVQPKXXXXXXXXXXXXXKIRKNLRAEIRDIQR 196 +L + YP LSGGQ QRVALARSL +P+ +IRK+LR +IR IQ+ Sbjct: 122 ELGEYAARYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKHLREQIRRIQQ 181 Query: 197 RLGMTTLFVTHDQEEALILSDRICIMNQGRMVQEGSPEQLYTAPRTEFAARFMGSYNVFN 256 LG+TT+FVTHDQEEAL LSDRI +MN GR+VQ G E LYTAP FAA F+G+YN+ + Sbjct: 182 ELGLTTVFVTHDQEEALTLSDRIVLMNAGRIVQSGDAETLYTAPENAFAAGFIGNYNLLD 241 Query: 257 RAEALKLFRRIDSRSDRFAIRPEAVTLLAEGEAIQDDADGMMDVRGQVQAVSILGNIIRA 316 +A +L + S + + AIRPE++ L E ++G V V++ S+LGN+IR Sbjct: 242 AEQASRLLGQ--SCAQQVAIRPESLRLGNE------PSEG---VPALVRSHSLLGNVIRY 290 Query: 317 AVVAEGVHLTVDLLN 331 V A GV LTVD+LN Sbjct: 291 RVEAAGVELTVDVLN 305 >ref|NP_799860.1| putative ATP-binding component of ABC transporter [Vibrio parahaemolyticus RIMD 2210633] dbj|BAC61693.1| putative ATP-binding component of ABC transporter [Vibrio parahaemolyticus] Length = 339 Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 147/314 (46%), Positives = 204/314 (64%), Gaps = 4/314 (1%) Query: 18 YLKLQGIRKRFGDVPVLAGVDLNIGEGELVTLLGPSGCGKSTLLRCIAGLTELDSGSILL 77 Y+ + + KRFGD V + I +GE +TLLGPSGCGKSTLLR +AGL +D G I + Sbjct: 3 YVTAKNLTKRFGDNTVFEDIQFAIEQGEFITLLGPSGCGKSTLLRSLAGLNPVDGGEIWV 62 Query: 78 ADKELTKLPPRSRDVGMVFQSYALFPNLTVRQNVEYGMRMRGVAPAARRSRCEELLALVD 137 +E+T P+ R +GMVFQSYALFPN+TV N+ +G++M+ +A + +++ LVD Sbjct: 63 NGEEITHQVPQERGIGMVFQSYALFPNMTVEGNIAFGLKMKKLASDEIQREVTKVIELVD 122 Query: 138 LEDKRDVYPQSLSGGQQQRVALARSLAVQPKXXXXXXXXXXXXXKIRKNLRAEIRDIQRR 197 L+ K YP LSGGQ+QRVALAR+L V+P+ KIRK+LR +IRDIQ+ Sbjct: 123 LKGKEKHYPHQLSGGQRQRVALARALVVKPRILLLDEPLSALDAKIRKHLRQQIRDIQKE 182 Query: 198 LGMTTLFVTHDQEEALILSDRICIMNQGRMVQEGSPEQLYTAPRTEFAARFMGSYNVFNR 257 + +TT+FVTHDQEEA+I+SDRI +MN+G +VQ G+PE +YT P EF A FMG YN+ + Sbjct: 183 MNLTTIFVTHDQEEAMIMSDRIFLMNKGEIVQAGTPEAIYTHPANEFVAGFMGHYNLVDA 242 Query: 258 AEALKLFRRIDSRSDRFAIRPEAVTLLAEGEAIQDDADGMMDVRGQVQAVSILGNIIRAA 317 +A +LF ID++ + AIRPE++ + G + G ++ +LGN+IR Sbjct: 243 NKAKQLF-NIDTKW-KVAIRPESIYVKEHGRQYGNHISAPQ--MGTIKNHQLLGNVIRYQ 298 Query: 318 VVAEGVHLTVDLLN 331 V E LTVDLLN Sbjct: 299 VCVEECDLTVDLLN 312 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 447,599,293 Number of extensions: 16746819 Number of successful extensions: 118764 Number of sequences better than 1.0e-05: 19720 Number of HSP's gapped: 93764 Number of HSP's successfully gapped: 20781 Length of query: 361 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 234 Effective length of database: 412,420,005 Effective search space: 96506281170 Effective search space used: 96506281170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)