BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0065.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_979363.1| taurine ABC transporter, permease protein [Baci... 305 8e-82 ref|NP_881237.1| ABC transport protein, inner membrane component... 200 2e-50 ref|NP_883688.1| permease component of ABC transporter [Bordetel... 156 5e-37 ref|NP_782014.1| taurine transport system permease protein tauC ... 153 3e-36 ref|ZP_00086465.1| COG0600: ABC-type nitrate/sulfonate/bicarbona... 150 3e-35 >ref|NP_979363.1| taurine ABC transporter, permease protein [Bacillus cereus ATCC 10987] gb|AAS41971.1| taurine ABC transporter, permease protein [Bacillus cereus ATCC 10987] Length = 274 Score = 305 bits (780), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 141/222 (63%), Positives = 181/222 (81%) Query: 31 PDVIPGPWATLKGGRELIEDGTLMQYIGISFYRVLVGWVLGSLLAVPAGLIIGKVNVIRI 90 P +P P A L G EL ++G+L YIG+SF RV+ GW+LG+ +A+P GL+IG++ +R Sbjct: 52 PQFLPSPIAVLYGAIELSQNGSLFIYIGVSFLRVIAGWILGNFVAIPVGLLIGRIPWLRA 111 Query: 91 FAEPFLNFIRFIPPIAFITLFLVWFGIGEQSKIALIMYATFFIVILNTLTGVMSVEEDKI 150 +P +NFIRFIPP+AFITLF++WFGIGEQSKI LI YATFFIV +NT+TGV +VEEDKI Sbjct: 112 LFDPVINFIRFIPPLAFITLFMLWFGIGEQSKIFLITYATFFIVTINTITGVQAVEEDKI 171 Query: 151 RSARSMGANEWQILLHVIVPATVPYIFTGVRLAMGTSYMAIIGAEMIASNEGVGYLIWNS 210 RSARSMGA+EWQI+ HVI+PA +PY++TG +LAMG+S+MAI+GAEM+A+NEG+GY+IWN+ Sbjct: 172 RSARSMGASEWQIMFHVIIPAALPYMYTGAKLAMGSSFMAIVGAEMVAANEGIGYMIWNA 231 Query: 211 RLFFRTDWIFVGLFCLGFMGFATDRLFGWFGRKALYRYGVVS 252 RL+F+TDWIFVGL LG MGF DR+F FG L RY VV Sbjct: 232 RLYFKTDWIFVGLVILGLMGFLMDRIFNKFGSVVLKRYNVVK 273 >ref|NP_881237.1| ABC transport protein, inner membrane component [Bordetella pertussis Tohama I] emb|CAE42890.1| ABC transport protein, inner membrane component [Bordetella pertussis] Length = 264 Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/228 (44%), Positives = 152/228 (66%), Gaps = 3/228 (1%) Query: 11 VSLLWLAAFCIWQLGALLYGPDVI-PGPWATLKGGRELIEDGTLMQYIGISFYRVLVGWV 69 VS+L A W G+L P ++ PGP ATL+ G ++E G+++ +S R++ G+ Sbjct: 22 VSILCGLAVWAWTSGSLF--PSILFPGPQATLREGVRMLESGSIIVDAAVSLARIVAGFT 79 Query: 70 LGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIGEQSKIALIMYA 129 +GS + + GL+IG ++R P+L F RF+PPIA+++ ++WFG+GE SKI +I+Y Sbjct: 80 IGSAIGIVVGLLIGYFPMVRTAFNPYLQFFRFVPPIAWVSPAMIWFGVGETSKIFIIVYG 139 Query: 130 TFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFTGVRLAMGTSYM 189 T F V L+ + GV +KIR+A+ GA WQI HV++P+TV I TG+R++MG S+M Sbjct: 140 TVFTVALSAVAGVADAHVNKIRAAQMFGATRWQIFRHVVIPSTVSPILTGMRVSMGISFM 199 Query: 190 AIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATDRLF 237 +I AEM+A+ G+GYLI NSRL+ TD IFVG+F LG +G+ DR+F Sbjct: 200 TVIAAEMLAAESGIGYLILNSRLWMATDKIFVGIFVLGCLGYGADRIF 247 >ref|NP_883688.1| permease component of ABC transporter [Bordetella parapertussis 12822] ref|NP_888997.1| permease component of ABC transporter [Bordetella bronchiseptica RB50] emb|CAE36690.1| permease component of ABC transporter [Bordetella parapertussis] emb|CAE32951.1| permease component of ABC transporter [Bordetella bronchiseptica] Length = 255 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 140/231 (60%), Gaps = 6/231 (2%) Query: 4 VEKKWVSVSLLWLAAFCIWQLGALLYGPDVIPGPWATLKGGRELIEDGTLMQYIGISFYR 63 V W+ + LLW + I G L P ++P P L++ L I +S R Sbjct: 13 VLAPWLLIVLLW---YGIRASG--LVSPALVPSPGEVWTRFVALMQ-ARLPHDILMSTQR 66 Query: 64 VLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIGEQSKI 123 V VG LG+LLAVP G ++G +R F +P +NF R +PPIA I L +V+FGIGE +KI Sbjct: 67 VFVGVCLGTLLAVPVGFVLGWYRGVRSFIDPVINFFRALPPIALIPLVIVYFGIGETAKI 126 Query: 124 ALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFTGVRLA 183 A++ YA+FF ++ G+ + +R A+++GA + +I VIVP T+P++ T +R+A Sbjct: 127 AILFYASFFAGVIVMYEGISQINPIFVRVAKTLGATDGEIFRKVIVPLTIPHMLTALRVA 186 Query: 184 MGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATD 234 +G ++ ++ +E+IA+ +G+G LI ++ FF+ D I+VG+ C+GF+ A D Sbjct: 187 LGVAWATLVASELIAAQQGLGALIQDASSFFQLDIIYVGIICIGFIALAMD 237 >ref|NP_782014.1| taurine transport system permease protein tauC [Clostridium tetani E88] gb|AAO35951.1| taurine transport system permease protein tauC [Clostridium tetani E88] Length = 258 Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 132/207 (63%), Gaps = 6/207 (2%) Query: 21 IWQLGALL--YGPDVIPGPWATLKGGRELIEDG----TLMQYIGISFYRVLVGWVLGSLL 74 IW + + L P +IP P + +++++G TL+Q++G S R++V + ++ Sbjct: 22 IWFMASTLGWVDPKLIPSPKSVWTALVDIMQNGYKNYTLLQHLGASIERLVVAFFSAVII 81 Query: 75 AVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIGEQSKIALIMYATFFIV 134 A P GL G + IR EP + F R +PP+A+ TL ++W GI +SKIAL+ A F + Sbjct: 82 ATPLGLASGYNSKIRALLEPIIEFYRPLPPLAYYTLLVLWLGIENESKIALLFLACFAPI 141 Query: 135 ILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFTGVRLAMGTSYMAIIGA 194 ++ ++ V+ ++ED I SA ++GAN+WQ+ ++VI PA +P IFTG+R A+G +Y ++ A Sbjct: 142 YISCVSAVIKIKEDYINSAYTVGANKWQVFIYVIFPACLPDIFTGLRTALGVAYTTLVSA 201 Query: 195 EMIASNEGVGYLIWNSRLFFRTDWIFV 221 EM+A+ G+G+++ ++ + R+D IF+ Sbjct: 202 EMVAAKSGIGWMVLDASRYLRSDIIFL 228 >ref|ZP_00086465.1| COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Pseudomonas fluorescens PfO-1] Length = 279 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 143/251 (56%), Gaps = 10/251 (3%) Query: 2 KWVEKKWVSVSLLWLAAFCIWQLGAL-LYGPDVIPGPWATLKGGRELIE----DGTLMQY 56 + + +W+S+ L+ W + A L P +P P A L+ G L D TL Q+ Sbjct: 24 RSLSTRWISLLTLFALLVIWWAVTASGLIEPLFLPPPSAVLQKGWLLATTGYMDSTLWQH 83 Query: 57 IGISFYRVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFG 116 +G S R+ +G L AVP G+ IG + R +P + F R IPP+A++ L ++W G Sbjct: 84 LGASLSRIGLGLGFAILTAVPVGIAIGANRIARGVLDPLIEFYRPIPPLAYLPLIVIWCG 143 Query: 117 IGEQSKIALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYI 176 IGE SK+ LI A F + + T TGV +V+ K+R+A+S+GA Q++ HVI+P+ +P I Sbjct: 144 IGELSKVLLIYLAIFAPIAIATATGVRTVDPAKLRAAQSLGATRAQLIRHVILPSALPDI 203 Query: 177 FTGVRLAMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATDRL 236 TGVR+ +G + ++ AE+IA+ G+G+++ ++ F TD + +G+ + + FA + Sbjct: 204 LTGVRIGLGVGWSTLVAAELIAATSGLGFMVQSAAQFLVTDVVVLGILVIALIAFAME-- 261 Query: 237 FGWFGRKALYR 247 G +AL R Sbjct: 262 ---MGLRALQR 269 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.146 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 393,149,352 Number of extensions: 15956706 Number of successful extensions: 55316 Number of sequences better than 1.0e-05: 1234 Number of HSP's gapped: 55365 Number of HSP's successfully gapped: 1239 Length of query: 258 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 135 Effective length of database: 423,280,401 Effective search space: 57142854135 Effective search space used: 57142854135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 124 (52.4 bits)