BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0064.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_979364.1| taurine ABC transporter, ATP-binding protein [B... 341 1e-92 ref|NP_881238.1| ABC transport protein, ATP-binding component [B... 248 8e-65 ref|NP_948021.1| putative transport system ATP-binding protein [... 234 2e-60 emb|CAC27794.1| putative ABC-transporter [Paenibacillus durus] 228 8e-59 ref|NP_772888.1| ABC transporter ATP-binding protein [Bradyrhizo... 227 2e-58 >ref|NP_979364.1| taurine ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS41972.1| taurine ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 259 Score = 341 bits (874), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 164/249 (65%), Positives = 193/249 (77%), Gaps = 5/249 (2%) Query: 9 AIHIEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKS 68 AI I L KS++ +++++VNL I GEFF+LLGPSGCGKSTLL+MIAGFV K+ Sbjct: 16 AISISGLSKSFNNE-----QFVLENVNLTIGNGEFFILLGPSGCGKSTLLSMIAGFVEKT 70 Query: 69 GGNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRY 128 G L V++ E+ KP R+R VVFQQAD++LFPWLT++ENVEFGL+MKK K R IS Y Sbjct: 71 SGELMVNDEEIKKPDRNRGVVFQQADAALFPWLTIKENVEFGLKMKKMIKQTRNEISSYY 130 Query: 129 IGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELV 188 I LVGLDGHE K+P+ELSGGMKQRVQLARVLAND LLMDEPFGALDAMTRRTMQ EL+ Sbjct: 131 IKLVGLDGHEGKYPRELSGGMKQRVQLARVLANDSEFLLMDEPFGALDAMTRRTMQIELI 190 Query: 189 HIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDVASPELYAL 248 IW+ET+KT+IFVTHDIQEALLLG+RIG+MS GPSS I IYD LP+ R E Sbjct: 191 RIWKETNKTIIFVTHDIQEALLLGQRIGVMSKGPSSKIEKIYDIPLPYQRTFTDKEFNYY 250 Query: 249 YNQIQSHFE 257 Y IQSHF+ Sbjct: 251 YQMIQSHFD 259 >ref|NP_881238.1| ABC transport protein, ATP-binding component [Bordetella pertussis Tohama I] emb|CAE42891.1| ABC transport protein, ATP-binding component [Bordetella pertussis] Length = 267 Score = 248 bits (634), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 122/247 (49%), Positives = 165/247 (66%), Gaps = 2/247 (0%) Query: 12 IEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKSGGN 71 ++ +R + + GD ++ ++L ++ GEF +LGPSGCGK+T+LN+IAGF G Sbjct: 8 LDDVRFKHPGAKPGDPD-VLGGMSLQLRRGEFVCILGPSGCGKTTVLNLIAGFERPDRGA 66 Query: 72 LRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRYIGL 131 + ++ ++ PG +R VVFQ D SL+ WLT ENVEFGLR+ + P ERR + Y+ + Sbjct: 67 ISLNGKSIEGPGMERGVVFQ-GDDSLYHWLTALENVEFGLRIARVPPRERRQKARAYLDI 125 Query: 132 VGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELVHIW 191 VGL G E+KFP +LSGGMKQRV +ARVLA D +LLMDEPFG LDA TR T+Q ELV IW Sbjct: 126 VGLRGQENKFPSQLSGGMKQRVNIARVLACDAEVLLMDEPFGQLDAQTRATLQDELVEIW 185 Query: 192 RETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDVASPELYALYNQ 251 R+TH+TV FVTHDI EA+ L +RI +M GPSS++ + P PRD P+ +YN+ Sbjct: 186 RQTHRTVFFVTHDIAEAVALADRIVVMRAGPSSSVKEVVTCSQPRPRDRGHPDFGQMYNR 245 Query: 252 IQSHFEE 258 I E Sbjct: 246 ISGLISE 252 >ref|NP_948021.1| putative transport system ATP-binding protein [Rhodopseudomonas palustris CGA009] emb|CAE28120.1| putative transport system ATP-binding protein [Rhodopseudomonas palustris CGA009] Length = 272 Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/250 (49%), Positives = 166/250 (66%), Gaps = 9/250 (3%) Query: 10 IHIEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKSG 69 + + L K Y +++ G V + + V+L ++ GEF LLG SGCGKSTLL +IAGF + Sbjct: 15 LEVSGLNKIY-QASNGPVEAL-RSVDLTVRKGEFICLLGASGCGKSTLLRIIAGFEQATQ 72 Query: 70 GNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRYI 129 G++ V EV PG DR +VFQ D +LFPWLTVR+N+ FG ++ E ++DR++ Sbjct: 73 GSVGVYGCEVRGPGPDRGMVFQ--DYALFPWLTVRQNIGFGPSHRRVAPQEVDKLTDRFM 130 Query: 130 GLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELVH 189 +VGL D++P +LSGGMKQRV +ARVLAND ILLMDEPFGALDA+TR +Q+EL+ Sbjct: 131 AMVGLTAFADRYPHQLSGGMKQRVAIARVLANDADILLMDEPFGALDALTRAALQEELID 190 Query: 190 IWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDVASPEL---- 245 IWR T TVIFVTH ++EA+LL +R+ +MS P I + LP PRDVAS E Sbjct: 191 IWRTTKLTVIFVTHSVEEAVLLADRVVVMSSSP-GRIDQDVEIELPRPRDVASVEFNRLR 249 Query: 246 YALYNQIQSH 255 A+ Q+ SH Sbjct: 250 RAITQQLTSH 259 >emb|CAC27794.1| putative ABC-transporter [Paenibacillus durus] Length = 248 Score = 228 bits (582), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 112/217 (51%), Positives = 147/217 (67%), Gaps = 3/217 (1%) Query: 42 EFFVLLGPSGCGKSTLLNMIAGFVSKSGGNLRVDNVEVDKPGRDRAVVFQQADSSLFPWL 101 EF ++GPSGCGKSTLL++IAG + + G L +D ++ P DR +V Q +LFPW Sbjct: 1 EFLTIVGPSGCGKSTLLDLIAGLATPTEGELYIDGKKITGPALDRGIVMQ--GYALFPWR 58 Query: 102 TVRENVEFGLRMKKTPKAERRAISDRYIGLVGLDGHEDKFPKELSGGMKQRVQLARVLAN 161 TVR NVEFGL +KK PK +R+AISDR++ LVGL + D++P ELSGGMKQRV +AR LA Sbjct: 59 TVRRNVEFGLEIKKVPKKDRKAISDRFLELVGLSNYADRYPYELSGGMKQRVAIARALAY 118 Query: 162 DPAILLMDEPFGALDAMTRRTMQKELVHIWRETHKTVIFVTHDIQEALLLGERIGIMSVG 221 DP +LLMDEPF A+DA TR T+Q EL+ IW +T KT+IFVTH I EA+ L +R+ +MS Sbjct: 119 DPEVLLMDEPFAAVDAQTRETLQDELLRIWEQTGKTIIFVTHSIDEAVALADRVVVMSPN 178 Query: 222 PSSNITNIYDNVLPFPRDVASPELYALYNQIQSHFEE 258 P + I LP PR V + A ++ I+ E Sbjct: 179 P-GKVREIVPVSLPRPRSVGDVQSTADFSWIRHRVWE 214 >ref|NP_772888.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum] dbj|BAC51513.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 265 Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/253 (46%), Positives = 158/253 (62%), Gaps = 6/253 (2%) Query: 3 LPARQNAIHIEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIA 62 + AR + IEQ+ +++ ++ +L+I +F +LGPSGCGKSTLL ++A Sbjct: 1 MEARMTTLKIEQVSRTFPARHGNAPTRALEPTDLIIGNNDFVTILGPSGCGKSTLLRIVA 60 Query: 63 GFVSKSGGNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERR 122 G +GG + +D EV PG DR +VFQ +LFPWLTVREN+ FGLR + + ER Sbjct: 61 GLDRPTGGRVTLDGREVTGPGADRGMVFQ--SYTLFPWLTVRENIAFGLRERGVSQDERY 118 Query: 123 AISDRYIGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRT 182 I+D +I VGL G E+ +PK+LSGGM+QR +AR LANDP ILL+DEPFGALD TR Sbjct: 119 KIADAFIRQVGLSGFENHWPKQLSGGMQQRTAIARALANDPKILLLDEPFGALDNQTRAL 178 Query: 183 MQKELVHIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDV-- 240 MQ+ L+ IW KTV+FVTHDI+EA+ LG R+ +MS P I + LP PR Sbjct: 179 MQEMLLGIWERDQKTVLFVTHDIEEAIFLGSRVIVMSARPGRIKAEIAID-LPHPRSYKI 237 Query: 241 -ASPELYALYNQI 252 +PE L ++ Sbjct: 238 KTTPEFVQLKERL 250 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 376,937,825 Number of extensions: 14979368 Number of successful extensions: 111678 Number of sequences better than 1.0e-05: 20238 Number of HSP's gapped: 90090 Number of HSP's successfully gapped: 21466 Length of query: 258 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 135 Effective length of database: 423,280,401 Effective search space: 57142854135 Effective search space used: 57142854135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)