BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0063.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_979365.1| lipoprotein, putative [Bacillus cereus ATCC 109... 178 2e-43 gb|EAH89573.1| unknown [environmental sequence] 61 4e-08 emb|CAC39226.1| hypothetical protein [Eubacterium acidaminophilum] 60 5e-08 ref|NP_772442.1| ABC transporter substrate-binding protein [Brad... 58 4e-07 gb|EAK46990.1| unknown [environmental sequence] 57 8e-07 >ref|NP_979365.1| lipoprotein, putative [Bacillus cereus ATCC 10987] gb|AAS41973.1| lipoprotein, putative [Bacillus cereus ATCC 10987] Length = 340 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 154/284 (54%), Gaps = 1/284 (0%) Query: 57 FRVALDKGIFAKHGIDAEIINFGTPAEGVNALFIKQVDVAFGADFPVLNAVAKGEYSIIX 116 FR A +G F K+ I A++ NF + VNA+ +Q D AD+ +LN++ KG+ +I Sbjct: 57 FRAAEKQGYFEKNSIKAQLSNFAYGIDTVNAVLTEQADTGLAADYALLNSLGKGDMVVIS 116 Query: 117 XXXXXXXXXXXVWKLYVKDEIKSAADLKGKNLSFMRGTFLPYLWDEYLKEQGIALSDVTL 176 +L V++ IK+ DLKGK L +GT Y+W +YL + I D+T Sbjct: 117 TLTRGNEKSSKDNELLVREGIKTENDLKGKKLGVPKGTVTEYVWAKYLVAKHINEKDITF 176 Query: 177 TGQGAFDEAFIALKQGDVDAAWFSGSALTGKLAALEGVHELTDMSQTPVRLGMGLVAGNA 236 DEA + +K GD+DA W SG AL K ++GV +L D+ V + L+A + Sbjct: 177 VPYSTPDEAIVGMKNGDIDAVWSSG-ALKDKFKNIKGVTKLGDLESAGVTIDSYLLAKRS 235 Query: 237 FVQANPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKEATLKDLPVNPWKVGFTQ 296 FV+ NP + L A+ E Y + + E A L F+++K P++ LKD+ + +GFT+ Sbjct: 236 FVEKNPKAVENALKALSEGIKYVENNKKETAKLAFEQLKLPEKDALKDIERQNYVLGFTK 295 Query: 297 AAYDSLAGQKKYMVDTGIIEQDFDLDSKLDLEPLRKALPDKVTY 340 L KK++ + G ++ ++L K+DLE L+KA P+ VTY Sbjct: 296 EDAKHLEDMKKWLEEKGKLKDKYELKDKIDLESLKKAFPESVTY 339 >gb|EAH89573.1| unknown [environmental sequence] Length = 348 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 95/237 (40%), Gaps = 48/237 (20%) Query: 137 IKSAADLKGKNLSFMRGTFLPYLWD--------EYLKEQGIALSDVTL----------TG 178 I+S DL+G+ L R W L+ +G+ D TG Sbjct: 109 IRSVRDLRGRRLGLPRHPISIDFWRAAALKGFLSALELEGLGHGDAEWVDLPDERERRTG 168 Query: 179 QGAFDEA-------FIALKQGDVDAAWFSGSALTGKLAALEGVHEL-----TDMSQTP-- 224 +F AL +G+VDA + G + LE VH + D+ P Sbjct: 169 PASFTRGPHEYGIEIAALVRGEVDAVFVKG------VEGLETVHLIDAQVVIDLGAHPDP 222 Query: 225 -VRLGMG----LVAGNAFVQANPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKE 279 VR+G G L A + A PD + +FL+ V A +A HP E + +E + E Sbjct: 223 LVRIGNGTPRTLTVDRALIDARPDLVSRFLSVVVGAGDWAARHPAETVAYIGRETRASDE 282 Query: 280 ----ATLKDLPVNPWKVGFTQAAYDSLAGQKKYMVDTGIIEQDFDLDSKLDLEPLRK 332 A D+ + + G Q + D L K ++V+ G +EQDFD + +D P + Sbjct: 283 WVRYAYGADVHRH-LETGLAQTSIDGLVAFKDFLVEWGFLEQDFDARAWIDPAPFTR 338 >emb|CAC39226.1| hypothetical protein [Eubacterium acidaminophilum] Length = 327 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 4/191 (2%) Query: 136 EIKSAADLKGKNLSFMRGTFLPYLWDEYLKEQGIALSDVTLTGQGAFDEAFIALKQGDVD 195 +I ADLKGK ++ +GT L L L E G+++ DV G EA A+ G+VD Sbjct: 135 DINGLADLKGKKVAGPKGTILHQLLIAGLSEAGMSVDDVEFINMG-IPEAVAAMNSGNVD 193 Query: 196 AAWFSGSALTGKLAALEGVHELTDMSQTPVRLGMGLVAGNAFVQANPDGIGQFLAAVDEA 255 A +G A+T A +G +T + + + + F++ +PD +++A + Sbjct: 194 VALVAGPAVTK--AVSDGAKVIT-TGEGLLDATIVIATSGKFIKEHPDMTARYMAVHSRS 250 Query: 256 SAYAQEHPGEVADLMFKEVKQPKEATLKDLPVNPWKVGFTQAAYDSLAGQKKYMVDTGII 315 + +++ E ++ KE KE K + TQ + L +++++ G++ Sbjct: 251 LDFMKDNREETMEMAAKETGISKEDVEKMYDWYDFNPSITQKDVEELEKTQEFLLKNGML 310 Query: 316 EQDFDLDSKLD 326 E+ D+ S +D Sbjct: 311 EKGIDISSIID 321 >ref|NP_772442.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum] dbj|BAC51067.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 378 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 120/297 (40%), Gaps = 30/297 (10%) Query: 59 VALDKGIFAKHGIDAEIINFGTPAEGVNALFIKQVDVAFGADFPVLNA---------VAK 109 VA KGIF K+G+D + NF + + ++ + D+A A+ PV + VA Sbjct: 96 VAKSKGIFEKNGLDITVSNFTSGKQCLDTVIGGGADIATTAEAPVTASAMANQPIAFVAG 155 Query: 110 GEYSIIXXXXXXXXXXXXVWKLYVKDEIKSAADLKGKNLSFMRGTFLPYLWDEYLKEQGI 169 EYS + + K +K+ DL+GK + F GT LK G+ Sbjct: 156 MEYSDLKTV------------VAAKAGVKTKPDLRGKRIGFTAGTGSEVYTATLLKSAGL 203 Query: 170 ALSDVTLTGQGAFDEAFIALKQGDVDA--AWFSGSALTGKLAALEGVHELTDMSQTPVRL 227 DVTL E AL G +DA W A K A E V EL D + T Sbjct: 204 TPKDVTLVNLRP-QEMLPALAAGSIDAIDTWEPHIA-NAKKALGEAVAEL-DTTGT-YSE 259 Query: 228 GMGLVAGNAFVQANPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKEATLKDLPV 287 +V ++ ANP + +F+AA+ +A + + H E ++ V ++ Sbjct: 260 TFNIVVMRTYLDANPAVVEKFIAALIDAEVWVKAHQDEAITVVADAVGMKRDDLAPIWAD 319 Query: 288 NPWKVGFTQAAYDSLAGQKKYMVDTGIIEQDF---DLDSKLDLEPLRKALPDKVTYT 341 ++V + L + +D+G D + EPL+K P +VT + Sbjct: 320 YVYRVRLDDRLIEILKTHSAWRLDSGNHPPGAAMPDFSKVVVAEPLKKVDPARVTLS 376 >gb|EAK46990.1| unknown [environmental sequence] Length = 361 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 21/157 (13%) Query: 188 ALKQGDVDAAWFSGSALTGKLAALEGVHELTDMSQTP---VRLGMG----LVAGNAFVQA 240 AL +GDVDA + G A + ++G H + D+ P VR+G G L A + Sbjct: 198 ALVRGDVDAIFVKGVAGLETVHLIDG-HVVIDLGAHPDPLVRIGNGTPRTLTVDQALIDE 256 Query: 241 NPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKE--------ATLKDLPVNPWKV 292 PD + +F++ V A +A +HP E + +E + E + L N Sbjct: 257 RPDLVSRFVSVVVAAGDWATKHPAETVAYIGRETRSSDEWVRYAYGSEVHRHLETN---- 312 Query: 293 GFTQAAYDSLAGQKKYMVDTGIIEQDFDLDSKLDLEP 329 TQ + D L K ++ + G +E DFD + ++ +P Sbjct: 313 -LTQTSIDGLVAFKDFLFEWGFLEHDFDARAWVEPQP 348 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 444,014,832 Number of extensions: 17716169 Number of successful extensions: 43837 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 43914 Number of HSP's successfully gapped: 22 Length of query: 342 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 216 Effective length of database: 415,135,104 Effective search space: 89669182464 Effective search space used: 89669182464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)