BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0061.p (180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_979367.1| hypothetical transcriptional regulator in uvrx-... 154 1e-36 ref|NP_658121.1| MarR, MarR family [Bacillus anthracis A2012] 56 3e-07 ref|NP_396141.1| AGR_pAT_294p [Agrobacterium tumefaciens] >gi|17... 55 5e-07 ref|NP_846536.1| transcriptional regulator, MarR family [Bacillu... 55 7e-07 ref|NP_980443.1| transcriptional regulator, MarR family [Bacillu... 55 8e-07 >ref|NP_979367.1| hypothetical transcriptional regulator in uvrx-ilva intergenic region, putative [Bacillus cereus ATCC 10987] gb|AAS41975.1| hypothetical transcriptional regulator in uvrx-ilva intergenic region, putative [Bacillus cereus ATCC 10987] Length = 159 Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/150 (50%), Positives = 103/150 (68%) Query: 9 LQEADYLFRKMVRRFVKERDRVSVEGIALPGMLILQKIIRDGEQRLGDLAEQLDFTSGAI 68 ++E D+LFRKMVR+FVKERD++ +EGI LPG LIL KII+DGEQRL DLAE+LD TSGAI Sbjct: 9 IEETDWLFRKMVRKFVKERDKIKIEGIMLPGFLILNKIIQDGEQRLTDLAEELDLTSGAI 68 Query: 69 TALSDKLEAGGHTVRRRKEDDRRTVLMGITEKGREMVERNGSIGERCIXXXXXXXXXXXX 128 TAL DKLE G +R+R ++DRR L+ ITE G + ++RN +I + Sbjct: 69 TALCDKLEERGLAIRKRHQEDRRITLLDITEDGLKFIKRNHNIRTSFMSVLFDGFSTEEL 128 Query: 129 XQQSRFYERIIRNLEGFSETLLKLAQQNAE 158 Q+ ++R+ NLE S T++KL+ +N E Sbjct: 129 HVQAEVFKRLAHNLEQLSHTIMKLSNENRE 158 >ref|NP_658121.1| MarR, MarR family [Bacillus anthracis A2012] Length = 139 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 56/107 (52%) Query: 1 MDDKQWERLQEADYLFRKMVRRFVKERDRVSVEGIALPGMLILQKIIRDGEQRLGDLAEQ 60 M++K+ + E FRKM+R + + E + +L+ + + Q +A + Sbjct: 1 MNEKRETLILELSGSFRKMIRLLQNDINTRFAEHMPYNEFSVLRALFLNSPQMASQIASE 60 Query: 61 LDFTSGAITALSDKLEAGGHTVRRRKEDDRRTVLMGITEKGREMVER 107 ++ TS ITA++D+L G R+R DRR V + ITE GRE+ E+ Sbjct: 61 VNVTSSHITAVTDRLVRKGFVERKRSNSDRRIVYLEITEHGREVTEK 107 >ref|NP_396141.1| AGR_pAT_294p [Agrobacterium tumefaciens] ref|NP_535584.1| transcriptional regulator, MarR family [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AF3185 transcription regulator, MarR family Atu5211 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) plasmid AT gb|AAK90582.1| AGR_pAT_294p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45900.1| transcriptional regulator, MarR family [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 155 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 46/83 (55%) Query: 34 GIALPGMLILQKIIRDGEQRLGDLAEQLDFTSGAITALSDKLEAGGHTVRRRKEDDRRTV 93 G+ P L+L + + EQ + +A+QL S +T L +LEA GH R R ++ R V Sbjct: 38 GLTYPQYLVLNVLWAEDEQTVVSIADQLALESSTLTPLLKRLEAAGHLSRTRNLNNERQV 97 Query: 94 LMGITEKGREMVERNGSIGERCI 116 L+ +T++GR + + G + + + Sbjct: 98 LVALTDQGRALQHKAGCLSDTLL 120 >ref|NP_846536.1| transcriptional regulator, MarR family [Bacillus anthracis str. Ames] gb|AAP28022.1| transcriptional regulator, MarR family [Bacillus anthracis str. Ames] Length = 150 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%) Query: 16 FRKMVRRFVKERDRVSVEGIALPGMLILQKIIRDGEQRLGDLAEQLDFTSGAITALSDKL 75 FRKM+R + + E + +L+ + + Q +A +++ TS ITA++D+L Sbjct: 27 FRKMIRLLQNDINTRFAEHMPYNEFSVLRALFLNSPQMASQIASEVNVTSSHITAVTDRL 86 Query: 76 EAGGHTVRRRKEDDRRTVLMGITEKGREMVER 107 G R+R DRR V + ITE GRE+ E+ Sbjct: 87 VRKGFVERKRSNSDRRIVYLEITEHGREVTEK 118 >ref|NP_980443.1| transcriptional regulator, MarR family [Bacillus cereus ATCC 10987] gb|AAS43051.1| transcriptional regulator, MarR family [Bacillus cereus ATCC 10987] Length = 139 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 55/107 (51%) Query: 1 MDDKQWERLQEADYLFRKMVRRFVKERDRVSVEGIALPGMLILQKIIRDGEQRLGDLAEQ 60 M++K+ + E FRKM+R + + E + +L+ + Q +A + Sbjct: 1 MNEKRETLILELSGSFRKMIRLLQNDINTRFAEHMPYNEFSVLRALFLKSPQMASQIASE 60 Query: 61 LDFTSGAITALSDKLEAGGHTVRRRKEDDRRTVLMGITEKGREMVER 107 ++ TS ITA++D+L G R+R DRR V + ITE GRE+ E+ Sbjct: 61 VNVTSSHITAVTDRLVRKGFVERKRSNSDRRIVYLEITEHGREVTEK 107 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 228,043,169 Number of extensions: 7616306 Number of successful extensions: 24659 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 24669 Number of HSP's successfully gapped: 10 Length of query: 180 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 62 Effective length of database: 436,855,896 Effective search space: 27085065552 Effective search space used: 27085065552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)