BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0050.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977327.1| oligopeptide ABC transporter, ATP-binding prote... 369 e-101 ref|NP_830697.1| Oligopeptide transport ATP-binding protein oppF... 368 e-100 ref|NP_654856.1| ABC_tran, ABC transporter [Bacillus anthracis A... 363 2e-99 ref|NP_622281.1| ABC-type dipeptide/oligopeptide/nickel transpor... 327 2e-88 ref|NP_350211.1| Oligopeptide ABC transporter, ATPase component ... 326 5e-88 >ref|NP_977327.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39935.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 323 Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/272 (65%), Positives = 213/272 (78%), Gaps = 1/272 (0%) Query: 7 LVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCLLR 66 L++V NL+K+F K L GR T LKAVD +SF I++GETFGLVGESG GKST GR ++R Sbjct: 6 LIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSIIR 65 Query: 67 LYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKIHG 126 L+D T G V FDG+ + L E LK +R+R+Q IFQDPY+SLNPS+NV ++ISEPM IHG Sbjct: 66 LHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPSMNVFQIISEPMNIHG 125 Query: 127 IYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEPIS 186 Y+ VGLK EHLYR+PHEFSGGQRQRISIARALSV+P+F++CDEPIS Sbjct: 126 SYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEPIS 185 Query: 187 ALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDELY 246 ALDVSVQAQVVNML+D+Q E G+TYLFIAHDLSMVRHISDRIGVMY G +VE+ADS++LY Sbjct: 186 ALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSEDLY 245 Query: 247 DNPLHPYTKALLSSILETDPRK-GSRRIRLEG 277 P HPYT+ALLSS+ E DP G RI LEG Sbjct: 246 TKPAHPYTQALLSSMPEPDPTNIGKERIILEG 277 >ref|NP_830697.1| Oligopeptide transport ATP-binding protein oppF [Bacillus cereus ATCC 14579] gb|AAP07898.1| Oligopeptide transport ATP-binding protein oppF [Bacillus cereus ATCC 14579] Length = 326 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/272 (65%), Positives = 213/272 (78%), Gaps = 1/272 (0%) Query: 7 LVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCLLR 66 L++V NL+K+F K L GR T LKAVD +SF I++GETFGLVGESG GKST GR ++R Sbjct: 9 LIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSIIR 68 Query: 67 LYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKIHG 126 L+D T G V FDG+ + L E LK +R+R+Q IFQDPY+SLNP++NV ++ISEPM IHG Sbjct: 69 LHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPAMNVFQIISEPMNIHG 128 Query: 127 IYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEPIS 186 Y+ VGLK EHLYR+PHEFSGGQRQRISIARALSV+P+F++CDEPIS Sbjct: 129 SYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEPIS 188 Query: 187 ALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDELY 246 ALDVSVQAQVVNML+D+Q E G+TYLFIAHDLSMVRHISDRIGVMY G +VE+ADS++LY Sbjct: 189 ALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSEDLY 248 Query: 247 DNPLHPYTKALLSSILETDPRK-GSRRIRLEG 277 P HPYT+ALLSS+ E DP G RI LEG Sbjct: 249 TKPAHPYTQALLSSMPEPDPTNIGKERIILEG 280 >ref|NP_654856.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_843420.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP24906.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 323 Score = 363 bits (933), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 177/272 (65%), Positives = 212/272 (77%), Gaps = 1/272 (0%) Query: 7 LVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCLLR 66 L++V N +K+F K GR T LKAVD +SF I++GETFGLVGESG GKST GR ++R Sbjct: 6 LIEVRNSKKYFPIKKGPFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSIIR 65 Query: 67 LYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKIHG 126 L+D T G V FDG+ + L E LK +R+R+Q IFQDPY+SLNP++NV ++ISEPM IHG Sbjct: 66 LHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPAMNVFQIISEPMNIHG 125 Query: 127 IYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEPIS 186 Y+ VGLK EHLYR+PHEFSGGQRQRISIARALSV+P+F++CDEPIS Sbjct: 126 SYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEPIS 185 Query: 187 ALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDELY 246 ALDVSVQAQVVNML+D+Q E G+TYLFIAHDLSMVRHISDRIGVMY G +VE+ADS++LY Sbjct: 186 ALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSEDLY 245 Query: 247 DNPLHPYTKALLSSILETDPRK-GSRRIRLEG 277 P HPYT+ALLSS+ E DP K G RI LEG Sbjct: 246 TKPAHPYTQALLSSMPEPDPTKTGKDRIILEG 277 >ref|NP_622281.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM23885.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 320 Score = 327 bits (838), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 173/322 (53%), Positives = 217/322 (67%), Gaps = 28/322 (8%) Query: 1 VSDSKVLVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTV 60 +SDSKVL++V NL+K+F ++G VLKAVD VSF I++GET GLVGESG GKST Sbjct: 1 MSDSKVLLEVKNLKKYFY----VKG---GVLKAVDDVSFAIKKGETLGLVGESGCGKSTT 53 Query: 61 GRCLLRLYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISE 120 GR ++ LY+ T GE+ FDG+ + L +G K F RR+Q IFQDPY+SLNP + V ++I E Sbjct: 54 GRTIIGLYEPTAGEIVFDGEKVDHLSYEGRKKFARRVQMIFQDPYASLNPRMTVGDIIGE 113 Query: 121 PMKIHGIYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVV 180 + IHG+Y G VGL REH RFPHEFSGGQRQRI IARA+++ PEF++ Sbjct: 114 GIDIHGLYTGKERMERIYELLEMVGLNREHANRFPHEFSGGQRQRIGIARAMAIEPEFII 173 Query: 181 CDEPISALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVA 240 DEPISALDVS+QAQ+VN+L +LQ E GLTYLFIAHDLSMVRHISD + VMY G +VE+ Sbjct: 174 ADEPISALDVSIQAQIVNLLMNLQEEKGLTYLFIAHDLSMVRHISDNVAVMYLGTIVEMT 233 Query: 241 DSDELYDNPLHPYTKALLSSILETDPR--KGSRRIRLEG-------------------YS 279 S ELY NPLHPYT+ALLS++ DP+ K RI LEG Y+ Sbjct: 234 SSAELYANPLHPYTQALLSAVPIPDPKVQKKRERIILEGDVPSPINPPSGCKFRTRCKYA 293 Query: 280 GGSGADARAVLREVSPGHYVAV 301 + L+EV+ GH+VA Sbjct: 294 MDICKEQAPPLKEVASGHFVAC 315 >ref|NP_350211.1| Oligopeptide ABC transporter, ATPase component [Clostridium acetobutylicum] pir||D97345 oligopeptide ABC transporter, ATPase component CAC3628 [imported] - Clostridium acetobutylicum gb|AAK81551.1| Oligopeptide ABC transporter, ATPase component [Clostridium acetobutylicum] Length = 322 Score = 326 bits (835), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 163/278 (58%), Positives = 204/278 (73%), Gaps = 8/278 (2%) Query: 2 SDSKVLVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVG 61 + S VL++V NL+K+F+ G + A+LKAVD VSF I++GET GLVGESG GK+T G Sbjct: 5 NKSDVLIEVKNLKKYFNVGHN------AILKAVDDVSFTIKKGETLGLVGESGCGKTTCG 58 Query: 62 RCLLRLYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEP 121 R +L LY T GEV +DG + L K K F ++ Q IFQDPY+ LNP + V ++I+E Sbjct: 59 RTVLGLYQATEGEVNYDGVNIHSLRGKAKKEFSKKAQMIFQDPYACLNPRMTVGDIIAEG 118 Query: 122 MKIHGIYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVC 181 + +HG+Y+G VGL REH RFPHEFSGGQRQRI IARAL++ PEF+VC Sbjct: 119 IDVHGLYKGEERTKKIYEMLDHVGLNREHASRFPHEFSGGQRQRIGIARALAINPEFIVC 178 Query: 182 DEPISALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVAD 241 DEPISALDVS+QAQ+VN+L LQ E GLTYLFIAHDLSMV+HISDR+GVMY G +VE A Sbjct: 179 DEPISALDVSIQAQIVNLLIKLQREMGLTYLFIAHDLSMVKHISDRVGVMYLGTMVEFAA 238 Query: 242 SDELYDNPLHPYTKALLSSILETDPR--KGSRRIRLEG 277 S +LY+NPLHPYTKAL+S+I DP+ K +RI+LEG Sbjct: 239 SHDLYENPLHPYTKALMSAIPIPDPKVEKTRQRIKLEG 276 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 425,044,663 Number of extensions: 17032488 Number of successful extensions: 106174 Number of sequences better than 1.0e-05: 14997 Number of HSP's gapped: 94731 Number of HSP's successfully gapped: 15969 Length of query: 302 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 177 Effective length of database: 417,850,203 Effective search space: 73959485931 Effective search space used: 73959485931 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)