BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0049.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977326.1| oligopeptide ABC transporter, ATP-binding prote... 404 e-111 ref|NP_830696.1| Oligopeptide transport ATP-binding protein oppD... 402 e-111 ref|NP_350219.1| Oligopeptide ABC transporter, ATPase component ... 367 e-100 ref|NP_350224.1| Oligopeptide ABC transporter, ATPase component ... 365 1e-99 ref|NP_693890.1| dipeptide ABC transporter ATP-binding protein [... 356 4e-97 >ref|NP_977326.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39934.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 330 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/323 (59%), Positives = 236/323 (73%), Gaps = 1/323 (0%) Query: 1 MTKRLLSVENLQVSFATRDGENQAVRGVSFHIDAGETVGIVGESGSGKSVTAKAIMSLIT 60 M+++LL V+NL+ SF GE +AVRGV+F ++ GE VGIVGESGSGKSV AK++MSL+T Sbjct: 1 MSEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVT 60 Query: 61 PPGRITAGNIGFRGESLTGLSEKAWRSLRGNRIAMVFQDPMTSLNPVKKIGQQLTEVIRR 120 PG++ G I F E++ SEK RS+RGN+I+++ QDPM++LNPV KIG+Q+TEVI R Sbjct: 61 SPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIR 120 Query: 121 HRGLNXXXXXXXXXXXXRQVGIQHPEQRLKQYPHEFSGGMRQRVMIAMALSCQPELLIAD 180 H+ + +QVG+ PE+R+KQYPHE SGGM+QRVMIAMA+SC P+LLIAD Sbjct: 121 HQKVKKKEAEHIAVNLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCNPDLLIAD 180 Query: 181 EPTTALDATIQAQILDLFKELKENSETAIALITHDLGVVAQVCTRVIVMYGGLIMEEGTV 240 EPTTALD TIQAQILDL K LK + A+ LITHDLG+VAQ CTRVIVMYGGLIMEEG V Sbjct: 181 EPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPV 240 Query: 241 EDIFYRPQHPYTQGLLRSIPKRGGGSRERLIPIEGTXXXXXXXXXGCPFMERCPHAFGRC 300 DIF P HPYT+GLL S+PK G +ERL PI+G GCPF ERCPHA C Sbjct: 241 LDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPKGCPFAERCPHAMDIC 300 Query: 301 -SERPPTVELAAGHRSMCWLAEE 322 ERPP E+ RSMCWL ++ Sbjct: 301 EKERPPYFEIGNERRSMCWLNDK 323 >ref|NP_830696.1| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATCC 14579] gb|AAP07897.1| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATCC 14579] Length = 330 Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 234/322 (72%), Gaps = 1/322 (0%) Query: 1 MTKRLLSVENLQVSFATRDGENQAVRGVSFHIDAGETVGIVGESGSGKSVTAKAIMSLIT 60 M+++LL V+NL+ SF GE +AVRGV+F ++ GE VGIVGESGSGKSV AK++MSL+ Sbjct: 1 MSEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVM 60 Query: 61 PPGRITAGNIGFRGESLTGLSEKAWRSLRGNRIAMVFQDPMTSLNPVKKIGQQLTEVIRR 120 PG++ G I F E++ SEK RS+RGN+I+++ QDPM++LNPV KIG+Q+ EVI R Sbjct: 61 SPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIR 120 Query: 121 HRGLNXXXXXXXXXXXXRQVGIQHPEQRLKQYPHEFSGGMRQRVMIAMALSCQPELLIAD 180 H+ + +QVG+ PE+R+KQYPHE SGGM+QRVMIAMA+SC P+LLIAD Sbjct: 121 HQKVKKKEAEQIAINLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCNPDLLIAD 180 Query: 181 EPTTALDATIQAQILDLFKELKENSETAIALITHDLGVVAQVCTRVIVMYGGLIMEEGTV 240 EPTTALD TIQAQILDL K LK + A+ LITHDLG+VAQ CTRVIVMYGGLIMEEG V Sbjct: 181 EPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPV 240 Query: 241 EDIFYRPQHPYTQGLLRSIPKRGGGSRERLIPIEGTXXXXXXXXXGCPFMERCPHAFGRC 300 DIF P HPYT+GLL S+PK G +ERL PI+G GCPF ERCPHA C Sbjct: 241 LDIFQAPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDIC 300 Query: 301 -SERPPTVELAAGHRSMCWLAE 321 ERPP E+ G RSMCWL + Sbjct: 301 EKERPPYFEIGDGRRSMCWLND 322 >ref|NP_350219.1| Oligopeptide ABC transporter, ATPase component [Clostridium acetobutylicum] pir||D97346 oligopeptide ABC transporter, ATPase component CAC3636 [imported] - Clostridium acetobutylicum gb|AAK81559.1| Oligopeptide ABC transporter, ATPase component [Clostridium acetobutylicum] Length = 340 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/318 (54%), Positives = 223/318 (70%), Gaps = 1/318 (0%) Query: 3 KRLLSVENLQVSFATRDGENQAVRGVSFHIDAGETVGIVGESGSGKSVTAKAIMSLITPP 62 ++LL ++NL SF T GE ++VRG+SF ++ GE +GIVGESGSGKSVT ++M L+ Sbjct: 2 EKLLEIKNLNTSFFTHLGEVKSVRGISFELNKGEALGIVGESGSGKSVTMMSVMGLLQEN 61 Query: 63 GRITAGNIGFRGESLTGLSEKAWRSLRGNRIAMVFQDPMTSLNPVKKIGQQLTEVIRRHR 122 G+I G I F G ++T EK +RGN+I M+FQDPMTSLNPV IG Q+ E I++H Sbjct: 62 GKIVEGEIIFNGMNITHAPEKEMEKIRGNKIGMIFQDPMTSLNPVLTIGNQIAEGIKKHL 121 Query: 123 GLNXXXXXXXXXXXXRQVGIQHPEQRLKQYPHEFSGGMRQRVMIAMALSCQPELLIADEP 182 +N + VGI PE+R+KQYPHEFSGGMRQRVMIAMA++C+PELLIADEP Sbjct: 122 NMNTSEAIKRAIEMLKLVGIPSPEKRMKQYPHEFSGGMRQRVMIAMAIACKPELLIADEP 181 Query: 183 TTALDATIQAQILDLFKELKENSETAIALITHDLGVVAQVCTRVIVMYGGLIMEEGTVED 242 TTALD TIQAQIL+L K+LKE T+I LITHDLGVVA +C+++ VMYGGLI+E+G + Sbjct: 182 TTALDVTIQAQILELMKKLKEKMNTSIILITHDLGVVANLCSKINVMYGGLIVEKGDARE 241 Query: 243 IFYRPQHPYTQGLLRSIPKRGGGSRERLIPIEGTXXXXXXXXXGCPFMERCPHAFGRCSE 302 IFY P+HPYT GLL+SIP S+E+L+PI+G GCPF RCP+ C E Sbjct: 242 IFYNPKHPYTLGLLKSIPDPTKDSKEKLVPIDGYPPDLLNPPKGCPFAARCPYTMEICME 301 Query: 303 RP-PTVELAAGHRSMCWL 319 P P+ ++ H + CWL Sbjct: 302 MPVPSFKIGENHEAACWL 319 >ref|NP_350224.1| Oligopeptide ABC transporter, ATPase component [Clostridium acetobutylicum] pir||A97347 oligopeptide ABC transporter, ATPase component CAC3642 [imported] - Clostridium acetobutylicum gb|AAK81564.1| Oligopeptide ABC transporter, ATPase component [Clostridium acetobutylicum] Length = 340 Score = 365 bits (936), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 174/332 (52%), Positives = 225/332 (67%), Gaps = 1/332 (0%) Query: 3 KRLLSVENLQVSFATRDGENQAVRGVSFHIDAGETVGIVGESGSGKSVTAKAIMSLITPP 62 ++LL ++NL SF T GE ++VRG+SF ++ GE +GIVGESGSGKSVT ++M L+ Sbjct: 2 EKLLEIKNLNTSFFTHLGEVKSVRGISFELNKGEALGIVGESGSGKSVTMMSVMGLLQEN 61 Query: 63 GRITAGNIGFRGESLTGLSEKAWRSLRGNRIAMVFQDPMTSLNPVKKIGQQLTEVIRRHR 122 G+I G I F G L SEK +RGN++ M+FQDPMTSLNPV +G+QLTE I++H Sbjct: 62 GKIIDGEIIFNGVDLVKASEKEMEKIRGNKMGMIFQDPMTSLNPVLTVGEQLTEGIKKHL 121 Query: 123 GLNXXXXXXXXXXXXRQVGIQHPEQRLKQYPHEFSGGMRQRVMIAMALSCQPELLIADEP 182 ++ + VGI PE+R+KQYPHEFSGGMRQRVMIAMA++C+PELLIADEP Sbjct: 122 KMSSAEANKHAVEMLKLVGIPSPEKRMKQYPHEFSGGMRQRVMIAMAIACRPELLIADEP 181 Query: 183 TTALDATIQAQILDLFKELKENSETAIALITHDLGVVAQVCTRVIVMYGGLIMEEGTVED 242 TTALD TIQAQIL+L K LK+ T+I LITHDLGVVA +CT++ VMYGG I+E+G + Sbjct: 182 TTALDVTIQAQILELMKNLKDKMNTSIILITHDLGVVANLCTKINVMYGGTIIEKGNARE 241 Query: 243 IFYRPQHPYTQGLLRSIPKRGGGSRERLIPIEGTXXXXXXXXXGCPFMERCPHAFGRCSE 302 IFY P+HPYT GLL+SIP S+E+L+PI+G GCPF RCP+ C E Sbjct: 242 IFYNPKHPYTWGLLKSIPDPTKDSKEKLVPIDGYPPDLLNPPKGCPFAARCPYTMEICME 301 Query: 303 RP-PTVELAAGHRSMCWLAEEKQNQAAYAEGR 333 + P ++ H + CWL + EGR Sbjct: 302 KSAPAFKIGEDHEAACWLNHPDAPKVKEEEGR 333 >ref|NP_693890.1| dipeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14924.1| dipeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 335 Score = 356 bits (914), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 175/325 (53%), Positives = 224/325 (68%), Gaps = 3/325 (0%) Query: 4 RLLSVENLQVSFATRDGENQAVRGVSFHIDAGETVGIVGESGSGKSVTAKAIMSLI-TPP 62 ++L V++L V+F T G QAVRGV+FH++ GET+ IVGESG GKSVT+ AIM LI PP Sbjct: 3 KILEVKDLHVTFTTYGGSVQAVRGVNFHLNKGETLAIVGESGCGKSVTSNAIMRLIPNPP 62 Query: 63 GRITAGNIGFRGESLTGLSEKAWRSLRGNRIAMVFQDPMTSLNPVKKIGQQLTEVIRRHR 122 G IT GNI F+G+ L EK RS+RG I+M+FQDPMT+LNP IG QL E ++ H+ Sbjct: 63 GEITKGNIYFKGQDLIQFREKKMRSIRGVDISMIFQDPMTALNPTLTIGTQLMEGLKEHK 122 Query: 123 GLNXXXXXXXXXXXXRQVGIQHPEQRLKQYPHEFSGGMRQRVMIAMALSCQPELLIADEP 182 G++ VGI PE+RLKQYPH+FSGGMRQR++IA+AL C P+LLIADEP Sbjct: 123 GISGKQAKEKAIEMMELVGIPSPEERLKQYPHQFSGGMRQRIVIAIALICDPDLLIADEP 182 Query: 183 TTALDATIQAQILDLFKELKENSETAIALITHDLGVVAQVCTRVIVMYGGLIMEEGTVED 242 TTALD TIQAQIL+LF++++E +I LITHDLGVVA++ R+ VMY G I+E GT + Sbjct: 183 TTALDVTIQAQILELFEKIQEKMGVSIILITHDLGVVAKIADRIAVMYAGKIIETGTKRE 242 Query: 243 IFYRPQHPYTQGLLRSIPKRGGGSRERLIPIEGTXXXXXXXXXGCPFMERCPHAFGRCSE 302 IFY+PQHPYT+GLL+S+P R ++L PI+GT GCPF RCP A C + Sbjct: 243 IFYQPQHPYTKGLLKSVP-RLDIKEDKLTPIDGTPPDLFSPPQGCPFAARCPFAMEVCDK 301 Query: 303 RPPT-VELAAGHRSMCWLAEEKQNQ 326 P EL + H CWL +E+ Q Sbjct: 302 VYPVHTELTSSHNVDCWLQDERAQQ 326 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 451,638,492 Number of extensions: 16979698 Number of successful extensions: 107914 Number of sequences better than 1.0e-05: 13393 Number of HSP's gapped: 98495 Number of HSP's successfully gapped: 14029 Length of query: 337 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 211 Effective length of database: 415,135,104 Effective search space: 87593506944 Effective search space used: 87593506944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)