BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0038.p (155 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00100070.1| COG0071: Molecular chaperone (small heat shoc... 87 2e-16 ref|NP_831979.1| Small heat shock protein [Bacillus cereus ATCC ... 73 2e-12 ref|NP_978601.1| heat shock protein, Hsp20 family [Bacillus cere... 72 5e-12 ref|NP_844651.1| heat shock protein, Hsp20 family [Bacillus anth... 70 1e-11 emb|CAB43207.1| putative small heat shock protein [Streptococcus... 68 5e-11 >ref|ZP_00100070.1| COG0071: Molecular chaperone (small heat shock protein) [Desulfitobacterium hafniense] Length = 154 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 16/156 (10%) Query: 1 MFDLVPFGKRRDDAFGVLAKSLN---------EVFNDDFFAPIKSSTMSFRTDIRESEQA 51 MFDLVPF R G+ KS N FND F + + R D+RE+E+ Sbjct: 4 MFDLVPFEGRNS---GLPRKSRNLFDIDSIFENFFNDTLFPAFYNQSGQMRVDVRENEKE 60 Query: 52 YLIEAELPGFKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQ 111 +++EAELPG KEEI ID LTI V+K E++EE KD+ Sbjct: 61 FIVEAELPGVNKEEIQIDCTEDRLTI-TVQKTESTEEQKDNYIRKERKASSMARSFAIA- 118 Query: 112 DVAEDEIRASLKDGLLTLSVPKQQKSL--GKRIEIQ 145 ++ +EI A ++GLLT+++PK +K+ GK+I+IQ Sbjct: 119 NIRHEEITAKYENGLLTVTLPKHEKTAPKGKKIDIQ 154 >ref|NP_831979.1| Small heat shock protein [Bacillus cereus ATCC 14579] gb|AAP09180.1| Small heat shock protein [Bacillus cereus ATCC 14579] Length = 145 Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 4/147 (2%) Query: 1 MFDLVPFGKRRDDAFGVLAKSLNEVFNDDFFAPIKSSTMSFRTDIRESEQAYLIEAELPG 60 M +L P +R + SL E D FF P+ T F+ D+ E Y ++A+LPG Sbjct: 1 MRNLFPEITKRQNGIFDFGPSLLEGMTDAFFKPLNMDT--FKVDVHEQSGKYTVKADLPG 58 Query: 61 FKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAEDEIRA 120 F+KE I +D+ LTI+A E E+N++ + V E+ ++A Sbjct: 59 FQKENIQVDFEQDILTIQATNHNEVDEKNENGTYIRKERSIGSVTRRFNFKQVEEENVKA 118 Query: 121 SLKDGLLTLSVP--KQQKSLGKRIEIQ 145 + KDG+LT+ +P K++KS I I+ Sbjct: 119 NYKDGVLTIELPKLKEEKSSKTTINIE 145 >ref|NP_978601.1| heat shock protein, Hsp20 family [Bacillus cereus ATCC 10987] gb|AAS41209.1| heat shock protein, Hsp20 family [Bacillus cereus ATCC 10987] Length = 145 Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 1 MFDLVPFGKRRDDAFGVLAKSLNEVFNDDFFAPIKSSTMSFRTDIRESEQAYLIEAELPG 60 M +L P +R + SL E D FF P+ T F+ D+ E Y ++A+LPG Sbjct: 1 MRNLFPEITKRQNGIFDFGPSLLEGMTDAFFKPMNMDT--FKVDVHEQSDKYTVKADLPG 58 Query: 61 FKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAEDEIRA 120 F+KE I +++ LTI+A E E+N++ Q V E+ ++A Sbjct: 59 FQKENIQVEFEQDVLTIQATNHNEVEEKNENGIYIRKERSIGSVTRRFNFQQVEEENVKA 118 Query: 121 SLKDGLLTLSVPK 133 + KDG+LT+ +PK Sbjct: 119 NYKDGVLTIELPK 131 >ref|NP_844651.1| heat shock protein, Hsp20 family [Bacillus anthracis str. Ames] gb|AAP26137.1| heat shock protein, Hsp20 family [Bacillus anthracis str. Ames] Length = 145 Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 1 MFDLVPFGKRRDDAFGVLAKSLNEVFNDDFFAPIKSSTMSFRTDIRESEQAYLIEAELPG 60 M +L P +R + SL E D FF P+ F+ D+ E Y ++A+LPG Sbjct: 1 MRNLFPEITKRQNGIFDFGPSLLEGMTDAFFKPMNMDI--FKVDVHEQSDKYTVKADLPG 58 Query: 61 FKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAEDEIRA 120 F+KE I +++ LTI+A E E+N++ + V E+ +RA Sbjct: 59 FQKENIQVEFEQDVLTIQATNHNEVEEKNENGTYIRKERSIGSVTRRFSFKQVEEENVRA 118 Query: 121 SLKDGLLTLSVPK 133 + KDG+LT+ +PK Sbjct: 119 NYKDGVLTIELPK 131 >emb|CAB43207.1| putative small heat shock protein [Streptococcus thermophilus] Length = 142 Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 10 RRDDAFGVLAKSLNEVFNDDFFAPIKSSTMSFRTDIRESEQAYLIEAELPGFKKEEIDID 69 R D + + E F+ + F KS+ + +TDI E++ YL+EAELPG KE I + Sbjct: 8 RNSDTYSMTPFDFFEDFSRNLFNDFKSNLI--KTDIHETDNEYLVEAELPGIPKENIQVT 65 Query: 70 YASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAEDEIRASLKDGLLTL 129 Y LTI ++ + +E+K + ++V EDEI+AS DG+L + Sbjct: 66 YEDGVLTISGQQQIDTVDEDKKGKLIRSERSSTSLRRQYLLENVKEDEIKASYSDGILKV 125 Query: 130 SVPK-QQKSLGKRIEIQ 145 ++PK K + K I I+ Sbjct: 126 TLPKDSNKEIKKSIPIE 142 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.132 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 195,282,411 Number of extensions: 6541876 Number of successful extensions: 13202 Number of sequences better than 1.0e-05: 129 Number of HSP's gapped: 13340 Number of HSP's successfully gapped: 129 Length of query: 155 Length of database: 757,237,578 Length adjustment: 113 Effective length of query: 42 Effective length of database: 450,431,391 Effective search space: 18918118422 Effective search space used: 18918118422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 120 (50.8 bits)