BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0032.p
         (187 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_469589.1| lin0244 [Listeria innocua] >gi|25381439|pir||AE...    55   1e-06

>ref|NP_469589.1| lin0244 [Listeria innocua]
 pir||AE1463 hypothetical protein lin0244 [imported] - Listeria innocua  (strain
           Clip11262)
 emb|CAC95477.1| lin0244 [Listeria innocua]
          Length = 194

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 14  QLVMRRDSLSDLPDIVLPAGYRLRHFEPGDDMHWERLVELSFGWTRS-------FAEQIG 66
            + M   S +  P+  LP GY  R +  G +  W RL +L  G   S       F  + G
Sbjct: 10  SVAMVNHSATKYPEFSLPEGYSFRFYRDGMEEDWCRL-QLETGQVPSMESIRMRFNTEFG 68

Query: 67  GNAYFRAERVLFICC--GDIPAATATAWHEPKWGEACGYLHMVGVHPDHGGKGLGYAASL 124
                 A+R +F+    G+I   TA  W    +GE    +H V V   HGGKG+  A   
Sbjct: 69  NEKEKLAKRCVFVEAPDGEI-IGTAMLWDGNTFGEMASRIHWVAVLDSHGGKGIAKALLS 127

Query: 125 AALRQMREDGRRHAVLETDDFRLPAIKIYKKLNFNPVYEHDNHPKRWE 172
             L   + D      L T      AI +Y+K  F      D  P+ W+
Sbjct: 128 KILGLNKSD---FVYLTTQTGSYQAIYLYQKFGFEKFV--DETPENWK 170


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 317,869,909
Number of extensions: 13440981
Number of successful extensions: 26347
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 26357
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 69
Effective length of database: 436,855,896
Effective search space: 30143056824
Effective search space used: 30143056824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 122 (51.6 bits)