BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0016.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00144792.1| Iron(III)-transport ATP-binding protein sfuC ... 296 5e-79 ref|NP_773836.1| ABC transporter ATP-binding protein [Bradyrhizo... 295 9e-79 ref|ZP_00016505.1| COG3842: ABC-type spermidine/putrescine trans... 291 1e-77 ref|NP_436437.1| putative ABC transporter, ATP-binding protein [... 290 5e-77 ref|NP_603217.1| Iron(III)-transport ATP-binding protein sfuC [F... 286 3e-76 >ref|ZP_00144792.1| Iron(III)-transport ATP-binding protein sfuC [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23609.1| Iron(III)-transport ATP-binding protein sfuC [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 356 Score = 296 bits (758), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 150/345 (43%), Positives = 225/345 (65%), Gaps = 12/345 (3%) Query: 3 AHLSIQKLTKRYKTGDGVTDISLDVKKGEMITLLGPSGCGKTTVLRSVGGFLDPDSGDIM 62 A ++I +TK + + + + + GE ITLLGPSGCGKTT+LR + GF P SG+I Sbjct: 2 ASVTITGVTKSFGNVTVLQEFNQKFEDGEFITLLGPSGCGKTTMLRLIAGFEKPSSGEIY 61 Query: 63 IEGKSVLSA----PPEKRPTSMVFQGYNLWPHMTVYENLAFGLKIRKIRKAERDKAISEV 118 I K V S PPEKR MVFQ Y +WPHM V++N+A+ LKI+KI K E ++ +++V Sbjct: 62 IGDKLVSSEKEFLPPEKRGIGMVFQSYAVWPHMNVFDNIAYPLKIQKISKNEIEERVNQV 121 Query: 119 LELVRLPGSEKKYPGQLSGGQQQRIAVARSLLLKPAVLLLDEPFSALDAKLRHEMREELR 178 L++V L + ++P +LSGGQQQR+A+ R+L+ +P +LLLDEP S LDAKLR EMR E++ Sbjct: 122 LKIVHLEQYKDRFPSELSGGQQQRVALGRALVAQPEILLLDEPLSNLDAKLREEMRYEIK 181 Query: 179 EIQAELGLTMVFVTHDQEEALSISDRIVVMNHGQIEQIATPQEIYDEPKSLYVAQFIGKM 238 EI +L +T+++VTHDQ EA+++SDRIV++N G+++Q+A PQEIY +PK+++VA F+GK+ Sbjct: 182 EITKKLKITVIYVTHDQIEAMTMSDRIVLINKGEVQQVAPPQEIYSKPKNMFVANFVGKV 241 Query: 239 NFMKGVITEEGIQVGSLR---FPNAAGLTGEVTVAVRPEDIVLESSAGSGLHGIIKQIMV 295 +F+KG + I + + PN + G V VA+RPE+ +L S + G + Sbjct: 242 DFIKGKVVGSKILLDNSDGQILPNTSSFKGNVVVAIRPENAIL--SDDGEITGKVYSKFY 299 Query: 296 LGHYAEVSADIRNHGVIRAFMARDKVKELQQGQEISVQFSKILAY 340 LG Y ++ +I N ++R L +G E+ + KIL Y Sbjct: 300 LGDYNDLRVEIGNGNILRMIARASTYNTLNEGDEVKI---KILDY 341 >ref|NP_773836.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum] dbj|BAC52461.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 365 Score = 295 bits (756), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 144/278 (51%), Positives = 195/278 (70%), Gaps = 4/278 (1%) Query: 3 AHLSIQKLTKRYKTGDGVTDISLDVKKGEMITLLGPSGCGKTTVLRSVGGFLDPDSGDIM 62 A+L + ++ K++ V D+SL V KGE I+ LGPSGCGKTT L+ + GFLDP G I Sbjct: 22 AYLELDRVAKQFGAQTVVDDVSLSVGKGEFISFLGPSGCGKTTTLQMIAGFLDPTRGAIR 81 Query: 63 IEGKSVLSAPPEKRPTSMVFQGYNLWPHMTVYENLAFGLKIRKIRKAERDKAISEVLELV 122 +EGK + + P +R +VFQ Y L+PHMT EN+AFGL++RK+ +AER + + L +V Sbjct: 82 LEGKDLTAIHPARRGLGIVFQSYALFPHMTAAENVAFGLEMRKVPRAERAERVRAALAMV 141 Query: 123 RLPGSEKKYPGQLSGGQQQRIAVARSLLLKPAVLLLDEPFSALDAKLRHEMREELREIQA 182 L G E ++P ++SGGQQQR+A+AR+L++KP+VLLLDEP S LDAKLR EM+ ELR+IQ Sbjct: 142 GLAGYEDRHPRRMSGGQQQRVALARALVIKPSVLLLDEPLSNLDAKLREEMQIELRQIQR 201 Query: 183 ELGLTMVFVTHDQEEALSISDRIVVMNHGQIEQIATPQEIYDEPKSLYVAQFIGKMNFMK 242 +G T + VTHDQ EA+S+SDRIVVM+ G+IEQI TPQE Y++P S +V+QF+GK N Sbjct: 202 TIGTTTILVTHDQNEAMSLSDRIVVMSQGKIEQIGTPQETYEKPASAFVSQFLGKTNDFA 261 Query: 243 GVITEEG----IQVGSLRFPNAAGLTGEVTVAVRPEDI 276 I + GS P GL+G VTV++RPE I Sbjct: 262 ATIDRATAPAKLVAGSWSAPAPVGLSGPVTVSIRPERI 299 >ref|ZP_00016505.1| COG3842: ABC-type spermidine/putrescine transport systems, ATPase components [Rhodospirillum rubrum] Length = 366 Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 139/280 (49%), Positives = 202/280 (72%), Gaps = 6/280 (2%) Query: 3 AHLSIQKLTKRYKTGDGVTDISLDVKKGEMITLLGPSGCGKTTVLRSVGGFLDPDSGDIM 62 A+L ++ L K + V+D +L V++GE ++ LGPSGCGKTTVLR +GGF P SG I+ Sbjct: 15 AYLDLKDLHKAFGAARVVSDFTLAVERGEFVSFLGPSGCGKTTVLRMIGGFETPSSGRIL 74 Query: 63 IEGKSVLSAPPEKRPTSMVFQGYNLWPHMTVYENLAFGLKIRKIRKAERDKAISEVLELV 122 I+G+ V + P +R MVFQ Y L+P++TV EN+AFGLK+ + ++ + + E+LEL+ Sbjct: 75 IDGQDVTALTPARRKVGMVFQAYALFPNLTVAENVAFGLKVAREPASQTARRVDEMLELI 134 Query: 123 RLPGSEKKYPGQLSGGQQQRIAVARSLLLKPAVLLLDEPFSALDAKLRHEMREELREIQA 182 +LP + +YP QLSGGQQQR+A+AR+L ++P +LLLDEP SALDAK+R +REE+R +Q Sbjct: 135 KLPQLKDRYPYQLSGGQQQRVALARALAVRPKILLLDEPLSALDAKIRVSLREEIRAVQR 194 Query: 183 ELGLTMVFVTHDQEEALSISDRIVVMNHGQIEQIATPQEIYDEPKSLYVAQFIGKMNFMK 242 ELG+T VFVTHDQEEALS+SDR+VVM++G+ +Q+ P EIY+ PK+ +VA F+G +N ++ Sbjct: 195 ELGITTVFVTHDQEEALSMSDRVVVMHNGRADQVGAPFEIYNAPKTRFVASFVGTLNLLE 254 Query: 243 GV------ITEEGIQVGSLRFPNAAGLTGEVTVAVRPEDI 276 GV +T EG + + R A + V++A+RPE I Sbjct: 255 GVALAPDRLTIEGQGITTTRGLAGAAVGATVSLALRPEAI 294 >ref|NP_436437.1| putative ABC transporter, ATP-binding protein [Sinorhizobium meliloti 1021] pir||G95410 probable ABC transporter, ATP-binding protein SMa2207 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymA gb|AAK65849.1| putative ABC transporter, ATP-binding protein [Sinorhizobium meliloti] Length = 361 Score = 290 bits (741), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 148/306 (48%), Positives = 205/306 (66%), Gaps = 13/306 (4%) Query: 5 LSIQKLTKRYKTGDGVTDISLDVKKGEMITLLGPSGCGKTTVLRSVGGFLDPDSGDIMIE 64 + ++ +TKRY V ++S DV +GE ++LLGPSGCGKTT LR + GF+DP G + + Sbjct: 6 IQVEGITKRYGAMTAVDNVSFDVGQGEFVSLLGPSGCGKTTTLRMIAGFVDPSGGLLRVR 65 Query: 65 GKSVLSAPPEKRPTSMVFQGYNLWPHMTVYENLAFGLKIR-KIRKAERDKAISEVLELVR 123 G+ V PPEKR VFQ Y LWPHMTV EN+AFGLK+R K R RDK ++E L Sbjct: 66 GRDVTHLPPEKRDLGFVFQNYALWPHMTVAENVAFGLKLRKKNRNFIRDK-VAEALTTTG 124 Query: 124 LPGSEKKYPGQLSGGQQQRIAVARSLLLKPAVLLLDEPFSALDAKLRHEMREELREIQAE 183 L G E + P QLSGGQQQR+A+AR+L L+P VLL+DEP S LD LR MR EL+E+QA Sbjct: 125 LSGYENRLPRQLSGGQQQRVALARALALEPQVLLMDEPLSNLDRALRVTMRRELKELQAR 184 Query: 184 LGLTMVFVTHDQEEALSISDRIVVMNHGQIEQIATPQEIYDEPKSLYVAQFIGKMNFMKG 243 + +T ++VTHDQEEALS+S+R+V+MN GQ+EQ+A P E+Y+ P + +VA F+G NF+ G Sbjct: 185 MKMTTLYVTHDQEEALSMSNRVVIMNKGQVEQVAAPFELYENPATGFVADFVGITNFLGG 244 Query: 244 VITE-EG----IQVGSLRFPNA-----AGLTGEVTVAVRPEDIVLESSAGSGLHGIIKQI 293 ++T EG +++GS + A L +V +RPE + L+++A G + + Q+ Sbjct: 245 IVTSAEGGGVEVKLGSGQMLRAVTKQPVALGTKVRALIRPERVTLKTTAADGDNILTGQV 304 Query: 294 MVLGHY 299 VL Y Sbjct: 305 -VLAEY 309 >ref|NP_603217.1| Iron(III)-transport ATP-binding protein sfuC [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL94516.1| Iron(III)-transport ATP-binding protein sfuC [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 356 Score = 286 bits (733), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 146/345 (42%), Positives = 223/345 (64%), Gaps = 12/345 (3%) Query: 3 AHLSIQKLTKRYKTGDGVTDISLDVKKGEMITLLGPSGCGKTTVLRSVGGFLDPDSGDIM 62 A ++I +TK + + + + + GE ITLLGPSGCGKTT+LR + GF P SG+I Sbjct: 2 ASVTITGVTKSFGNVTVLQEFNQKFEDGEFITLLGPSGCGKTTMLRLIAGFEKPSSGEIY 61 Query: 63 IEGKSVLSA----PPEKRPTSMVFQGYNLWPHMTVYENLAFGLKIRKIRKAERDKAISEV 118 I K V S PPEKR MVFQ Y +WPHM V++N+A+ LKI+KI K E ++ +++V Sbjct: 62 IGDKLVSSEKEFLPPEKRGIGMVFQSYAVWPHMNVFDNIAYPLKIQKISKNEIEERVNQV 121 Query: 119 LELVRLPGSEKKYPGQLSGGQQQRIAVARSLLLKPAVLLLDEPFSALDAKLRHEMREELR 178 L++V L + ++P +LSGGQQQR+A+ R+L+ +P +LLLDEP S LDAKLR EMR E++ Sbjct: 122 LKIVHLEQYKDRFPSELSGGQQQRVALGRALVAQPEILLLDEPLSNLDAKLREEMRYEIK 181 Query: 179 EIQAELGLTMVFVTHDQEEALSISDRIVVMNHGQIEQIATPQEIYDEPKSLYVAQFIGKM 238 EI +L +T+++VTHDQ EA+++S+RIV++N G+++Q+A PQEIY +PK+++VA F+GK+ Sbjct: 182 EITKKLKITVIYVTHDQIEAMTMSNRIVLINKGEVQQVAPPQEIYSKPKNMFVANFVGKV 241 Query: 239 NFMKGVITEEGIQVGSLR---FPNAAGLTGEVTVAVRPEDIVLESSAGSGLHGIIKQIMV 295 +F+ G + I + + N + G+V VA+RPE+ +L S + G + Sbjct: 242 DFITGKVEGSKILLDNSNNQILSNTSSFKGKVVVAIRPENAIL--SDDGEITGKVYSKFY 299 Query: 296 LGHYAEVSADIRNHGVIRAFMARDKVKELQQGQEISVQFSKILAY 340 LG ++ +I N ++R L +G E+ + KIL Y Sbjct: 300 LGDCNDLRVEIGNGNILRIIARASTYNTLNEGDEVKI---KILDY 341 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 467,584,037 Number of extensions: 18166347 Number of successful extensions: 136179 Number of sequences better than 1.0e-05: 22999 Number of HSP's gapped: 108795 Number of HSP's successfully gapped: 24669 Length of query: 343 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 217 Effective length of database: 415,135,104 Effective search space: 90084317568 Effective search space used: 90084317568 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)