BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0007.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241887.1| O6-methylguanine DNA alkyltransferase [Bacillus... 132 5e-30 gb|EAB26164.1| unknown [environmental sequence] 127 2e-28 gb|EAJ00124.1| unknown [environmental sequence] 124 7e-28 ref|NP_763116.1| Methylated DNA-protein cysteine methyltransfera... 122 3e-27 ref|NP_936093.1| methylated DNA-protein cysteine methyltransfera... 122 3e-27 >ref|NP_241887.1| O6-methylguanine DNA alkyltransferase [Bacillus halodurans] pir||E83777 O6-methylguanine DNA alkyltransferase dat [imported] - Bacillus halodurans (strain C-125) dbj|BAB04740.1| O6-methylguanine DNA alkyltransferase [Bacillus halodurans] Length = 175 Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 9/156 (5%) Query: 19 TLWASEKGLVRISFGLEERLPEGKWLNTYAPRHRYQ----EDQTVFMQLGITREMESYFG 74 ++ ++++G+ I FG E LN + +HR +D+ + ++ YF Sbjct: 19 SIVSTDQGVCTILFGSLES--NQVTLNVWLKKHRLPCQLLKDEEAIRP--VIAQLLEYFD 74 Query: 75 GAAVSFKDIPLDIWGTPFQQEVWKGLATIAHGEVITYRELAGRIGRPQAMRAVGTANGQN 134 G SF D+PLD++GTPFQ+ VW+ L TI++GE +Y+E+A IG P+A+RA+G AN QN Sbjct: 75 GKRHSF-DVPLDLYGTPFQKRVWQALQTISYGETRSYKEIAQHIGAPKAVRAIGGANNQN 133 Query: 135 PLPVILPCHRVIGTNGTLTGYRGGLKLKQELLALEG 170 P+P+I+PCHRVIG+NG + GY GGL+ K+ LL++EG Sbjct: 134 PIPIIIPCHRVIGSNGAMVGYGGGLEKKEWLLSIEG 169 >gb|EAB26164.1| unknown [environmental sequence] Length = 168 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 15/156 (9%) Query: 17 DWTLWASEKGLVRISFGLEE---RLPEGKWLNTYAPRHRYQEDQTVFMQLGITREMESYF 73 + TL AS++GL + + +E LPE +T P + R++E YF Sbjct: 16 ELTLVASQRGLCAVLWPTDEGRVPLPERLMPSTADP-----------VLSSAARQLEQYF 64 Query: 74 GGAAVSFKDIPLDIWGTPFQQEVWKGLATIAHGEVITYRELAGRIGRPQAMRAVGTANGQ 133 SF D+PLD+ GT FQQ VW+ L I +G+ TY++ A +I RP+A+RA+G+ANG+ Sbjct: 65 SRERTSF-DLPLDLHGTEFQQSVWRSLQEIPYGQTWTYKKQAIQINRPKAVRAIGSANGK 123 Query: 134 NPLPVILPCHRVIGTNGTLTGYRGGLKLKQELLALE 169 NP+ ++LPCHRVIGTNG+LTG+ GGL+ K++LL E Sbjct: 124 NPVSIVLPCHRVIGTNGSLTGFAGGLETKKQLLLFE 159 >gb|EAJ00124.1| unknown [environmental sequence] Length = 159 Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 58/105 (55%), Positives = 79/105 (75%), Gaps = 1/105 (0%) Query: 68 EMESYFGGAAVSFKDIPLDIWGTPFQQEVWKGLATIAHGEVITYRELAGRIGRPQAMRAV 127 ++E+YF G SF D+ + + GT FQ VWK L I +G+ +YRE+AG IGRP+A RAV Sbjct: 55 QLEAYFRGERKSF-DLAVSLSGTSFQTSVWKALKKIPYGKTWSYREVAGYIGRPRASRAV 113 Query: 128 GTANGQNPLPVILPCHRVIGTNGTLTGYRGGLKLKQELLALEGIN 172 G+ANG NP+P+I+PCHRVIG+NG+L G+ GG++LK+ LL LE N Sbjct: 114 GSANGLNPIPIIIPCHRVIGSNGSLAGFGGGVRLKKSLLDLEARN 158 >ref|NP_763116.1| Methylated DNA-protein cysteine methyltransferase [Vibrio vulnificus CMCP6] gb|AAO08106.1| Methylated DNA-protein cysteine methyltransferase [Vibrio vulnificus CMCP6] Length = 161 Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/151 (44%), Positives = 94/151 (62%), Gaps = 11/151 (7%) Query: 19 TLWASEKGLVRISFGLEERLPEGKWLNTYAPRHRYQEDQTVFMQLGITREMESYFGGAAV 78 T+ A+++GL+ I F LP L A H + +++E YF G Sbjct: 15 TVQANDQGLLGIWFEQHTTLP--MELGCDAATHPVISE--------TRQQLEQYFSGQRQ 64 Query: 79 SFKDIPLDIWGTPFQQEVWKGLATIAHGEVITYRELAGRIGRPQAMRAVGTANGQNPLPV 138 F D+PL GT FQQ+VW+ L I +G+ +Y++LA IG P+A+RAVG ANG+NP+ + Sbjct: 65 QF-DLPLAAQGTEFQQKVWQALTQIPYGQTCSYQDLANAIGNPKAVRAVGLANGKNPISI 123 Query: 139 ILPCHRVIGTNGTLTGYRGGLKLKQELLALE 169 ++PCHRVIG +G LTGY GGL+ KQ+LLALE Sbjct: 124 VVPCHRVIGKSGKLTGYAGGLERKQQLLALE 154 >ref|NP_936093.1| methylated DNA-protein cysteine methyltransferase [Vibrio vulnificus YJ016] dbj|BAC96063.1| methylated DNA-protein cysteine methyltransferase [Vibrio vulnificus YJ016] Length = 161 Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 56/103 (54%), Positives = 77/103 (74%), Gaps = 1/103 (0%) Query: 67 REMESYFGGAAVSFKDIPLDIWGTPFQQEVWKGLATIAHGEVITYRELAGRIGRPQAMRA 126 +++E YF G F D+PL GT FQQ+VW+ L I +G+ +Y++LA IG P+A+RA Sbjct: 53 QQLEQYFSGQRQQF-DLPLAAQGTEFQQKVWQALTQIPYGQTCSYQDLANAIGNPKAVRA 111 Query: 127 VGTANGQNPLPVILPCHRVIGTNGTLTGYRGGLKLKQELLALE 169 VG ANG+NP+ +++PCHRVIG +G LTGY GGL+ KQ+LLALE Sbjct: 112 VGLANGKNPISIVVPCHRVIGKSGKLTGYAGGLERKQQLLALE 154 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 295,640,028 Number of extensions: 12337371 Number of successful extensions: 23294 Number of sequences better than 1.0e-05: 611 Number of HSP's gapped: 23134 Number of HSP's successfully gapped: 611 Length of query: 184 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 66 Effective length of database: 436,855,896 Effective search space: 28832489136 Effective search space used: 28832489136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)