BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0005.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_756715.1| 2-keto-3-deoxygluconate permease [Escherichia c... 355 1e-96 ref|NP_418345.1| 2-keto-3-deoxy-D-gluconate transport system [Es... 354 1e-96 ref|NP_838969.1| 2-keto-3-deoxy-D-gluconate transport protein [S... 353 2e-96 ref|NP_290539.1| 2-keto-3-deoxy-D-gluconate transport system [Es... 353 3e-96 sp|Q8X4Q7|KDGT_ECO57 2-keto-3-deoxygluconate permease (KDG perme... 352 6e-96 >ref|NP_756715.1| 2-keto-3-deoxygluconate permease [Escherichia coli CFT073] gb|AAN83289.1| 2-keto-3-deoxygluconate permease [Escherichia coli CFT073] Length = 341 Score = 355 bits (910), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 183/324 (56%), Positives = 221/324 (68%) Query: 6 INHMKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFC 65 + M+IK++++KIPGGMMLVPLFLGA+ HT P AG YFG FT G++TGTVPILAVWFFC Sbjct: 12 VMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFC 71 Query: 66 MGAAIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISA 125 MGA+I + ATGTV+RKSGTLV+TK + +PE GV+ GFFAGLS LA+++A Sbjct: 72 MGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAA 131 Query: 126 MDMTNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLP 185 MDMTNGGLYASIMQQYGTKEE+GAFVLMSLESGPL+TM+ILG+ G A FEPH+FVGAVLP Sbjct: 132 MDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLP 191 Query: 186 FLIGFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXX 245 FL+GF LGNLD +LR +F KA QTLIPFF FALG++IDL VIA Sbjct: 192 FLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVT 251 Query: 246 XXPLILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIV 305 PLI+ADK IG P+L+A M P F P IV Sbjct: 252 GIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIV 311 Query: 306 TSILVPVVTAYYSDYMXXXXXXVE 329 TSILVP++T+ +S + +E Sbjct: 312 TSILVPILTSIWSRKVKARAAKIE 335 >ref|NP_418345.1| 2-keto-3-deoxy-D-gluconate transport system [Escherichia coli K12] ref|NP_709713.1| 2-keto-3-deoxy-D-gluconate transport system [Shigella flexneri 2a str. 301] pir||S40853 probable 2-keto-3-deoxygluconate transport protein - Escherichia coli (strain K-12) gb|AAB03042.1| CG Site No. 589; similar to Erwinia chrysanthemi KdgT [Escherichia coli] gb|AAC76891.1| 2-keto-3-deoxy-D-gluconate transport system [Escherichia coli K12] gb|AAN45420.1| 2-keto-3-deoxy-D-gluconate transport system [Shigella flexneri 2a str. 301] Length = 330 Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 183/322 (56%), Positives = 220/322 (68%) Query: 8 HMKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFCMG 67 M+IK++++KIPGGMMLVPLFLGA+ HT P AG YFG FT G++TGTVPILAVWFFCMG Sbjct: 3 EMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMG 62 Query: 68 AAIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISAMD 127 A+I + ATGTV+RKSGTLV+TK + +PE GV+ GFFAGLS LA+++AMD Sbjct: 63 ASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMD 122 Query: 128 MTNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLPFL 187 MTNGGLYASIMQQYGTKEE+GAFVLMSLESGPL+TM+ILG+ G A FEPH+FVGAVLPFL Sbjct: 123 MTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFL 182 Query: 188 IGFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXXXX 247 +GF LGNLD +LR +F KA QTLIPFF FALG++IDL VIA Sbjct: 183 VGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGI 242 Query: 248 PLILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIVTS 307 PLI+ADK IG P+L+A M P F P IVTS Sbjct: 243 PLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTS 302 Query: 308 ILVPVVTAYYSDYMXXXXXXVE 329 ILVP++T+ +S + +E Sbjct: 303 ILVPILTSIWSRKVKARAAKIE 324 >ref|NP_838969.1| 2-keto-3-deoxy-D-gluconate transport protein [Shigella flexneri 2a str. 2457T] sp|P32172|KDGT_ECOLI 2-keto-3-deoxygluconate permease (KDG permease) gb|AAP18780.1| 2-keto-3-deoxy-D-gluconate transport protein [Shigella flexneri 2a str. 2457T] Length = 327 Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 183/321 (57%), Positives = 220/321 (68%) Query: 9 MKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFCMGA 68 M+IK++++KIPGGMMLVPLFLGA+ HT P AG YFG FT G++TGTVPILAVWFFCMGA Sbjct: 1 MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGA 60 Query: 69 AIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISAMDM 128 +I + ATGTV+RKSGTLV+TK + +PE GV+ GFFAGLS LA+++AMDM Sbjct: 61 SIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDM 120 Query: 129 TNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLPFLI 188 TNGGLYASIMQQYGTKEE+GAFVLMSLESGPL+TM+ILG+ G A FEPH+FVGAVLPFL+ Sbjct: 121 TNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLV 180 Query: 189 GFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXXXXP 248 GF LGNLD +LR +F KA QTLIPFF FALG++IDL VIA P Sbjct: 181 GFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIP 240 Query: 249 LILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIVTSI 308 LI+ADK IG P+L+A M P F P IVTSI Sbjct: 241 LIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSI 300 Query: 309 LVPVVTAYYSDYMXXXXXXVE 329 LVP++T+ +S + +E Sbjct: 301 LVPILTSIWSRKVKARAAKIE 321 >ref|NP_290539.1| 2-keto-3-deoxy-D-gluconate transport system [Escherichia coli O157:H7 EDL933] ref|NP_312862.1| 2-keto-3-deoxy-D-gluconate transport system protein [Escherichia coli O157:H7] pir||C86080 2-keto-3-deoxy-D-gluconate transport system [imported] - Escherichia coli (strain O157:H7, substrain EDL933) pir||C91233 2-keto-3-deoxy-D-gluconate transport system [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gb|AAG59103.1| 2-keto-3-deoxy-D-gluconate transport system [Escherichia coli O157:H7 EDL933] dbj|BAB38258.1| 2-keto-3-deoxy-D-gluconate transport system protein [Escherichia coli O157:H7] Length = 330 Score = 353 bits (906), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 183/322 (56%), Positives = 219/322 (68%) Query: 8 HMKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFCMG 67 M+IK+ ++KIPGGMMLVPLFLGA+ HT P AG YFG FT G++TGTVPILAVWFFCMG Sbjct: 3 EMQIKRLIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMG 62 Query: 68 AAIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISAMD 127 A+I + ATGTV+RKSGTLV+TK + +PE GV+ GFFAGLS LA+++AMD Sbjct: 63 ASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMD 122 Query: 128 MTNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLPFL 187 MTNGGLYASIMQQYGTKEE+GAFVLMSLESGPL+TM+ILG+ G A FEPH+FVGAVLPFL Sbjct: 123 MTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFL 182 Query: 188 IGFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXXXX 247 +GF LGNLD +LR +F KA QTLIPFF FALG++IDL VIA Sbjct: 183 VGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGI 242 Query: 248 PLILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIVTS 307 PLI+ADK IG P+L+A M P F P IVTS Sbjct: 243 PLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTS 302 Query: 308 ILVPVVTAYYSDYMXXXXXXVE 329 ILVP++T+ +S + +E Sbjct: 303 ILVPILTSIWSRKVKARAAKIE 324 >sp|Q8X4Q7|KDGT_ECO57 2-keto-3-deoxygluconate permease (KDG permease) Length = 327 Score = 352 bits (904), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 183/321 (57%), Positives = 219/321 (68%) Query: 9 MKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFCMGA 68 M+IK+ ++KIPGGMMLVPLFLGA+ HT P AG YFG FT G++TGTVPILAVWFFCMGA Sbjct: 1 MQIKRLIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGA 60 Query: 69 AIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISAMDM 128 +I + ATGTV+RKSGTLV+TK + +PE GV+ GFFAGLS LA+++AMDM Sbjct: 61 SIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDM 120 Query: 129 TNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLPFLI 188 TNGGLYASIMQQYGTKEE+GAFVLMSLESGPL+TM+ILG+ G A FEPH+FVGAVLPFL+ Sbjct: 121 TNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLV 180 Query: 189 GFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXXXXP 248 GF LGNLD +LR +F KA QTLIPFF FALG++IDL VIA P Sbjct: 181 GFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIP 240 Query: 249 LILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIVTSI 308 LI+ADK IG P+L+A M P F P IVTSI Sbjct: 241 LIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSI 300 Query: 309 LVPVVTAYYSDYMXXXXXXVE 329 LVP++T+ +S + +E Sbjct: 301 LVPILTSIWSRKVKARAAKIE 321 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.143 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 387,933,918 Number of extensions: 14192046 Number of successful extensions: 32728 Number of sequences better than 1.0e-05: 25 Number of HSP's gapped: 32694 Number of HSP's successfully gapped: 25 Length of query: 342 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 216 Effective length of database: 415,135,104 Effective search space: 89669182464 Effective search space used: 89669182464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)