BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0563.0007.p
         (90 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_977107.1| ferrous iron transport protein A, putative [Bac...    97   1e-19
ref|NP_654662.1| hypothetical protein predicted by GeneMark [Bac...    97   2e-19
ref|NP_830521.1| Ferrous iron transport protein A [Bacillus cere...    96   3e-19
ref|ZP_00062018.1| COG1918: Fe2+ transport system protein A [Clo...    64   1e-09
ref|NP_905264.1| iron dependent repressor, putative [Porphyromon...    61   7e-09

>ref|NP_977107.1| ferrous iron transport protein A, putative [Bacillus cereus ATCC
          10987]
 gb|AAS39715.1| ferrous iron transport protein A, putative [Bacillus cereus ATCC
          10987]
          Length = 85

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6  VMAGAVIPLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRV 65
          +++  + PLSE   G  + I  I+++G ++RRLLDLGF+ G  ++VL+RSPLGDP A++V
Sbjct: 1  MVSANIKPLSEFKTGEFVQIEKIQLEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQV 60

Query: 66 SNTTIALRREESELIYGTLIG 86
          SNTTIALR+EES LI+G LIG
Sbjct: 61 SNTTIALRKEESSLIFGILIG 81


>ref|NP_654662.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_843239.1| ferrous iron transport protein A, putative [Bacillus anthracis
          str. Ames]
 gb|AAP24725.1| ferrous iron transport protein A, putative [Bacillus anthracis
          str. Ames]
          Length = 85

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 59/74 (79%)

Query: 13 PLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRVSNTTIAL 72
          PLSE   G  + I  I+++G ++RRLLDLGF+ G  ++VL+RSPLGDP A++VSNTTIAL
Sbjct: 8  PLSEFKTGEFVQIEKIQLEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQVSNTTIAL 67

Query: 73 RREESELIYGTLIG 86
          R+EES LI+G LIG
Sbjct: 68 RKEESSLIFGVLIG 81


>ref|NP_830521.1| Ferrous iron transport protein A [Bacillus cereus ATCC 14579]
 gb|AAP07722.1| Ferrous iron transport protein A [Bacillus cereus ATCC 14579]
          Length = 85

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6  VMAGAVIPLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRV 65
          +++  + PLSE   G  + I  I+++G ++RRLLDLGF+ G  ++VL+RSPLGDP A++V
Sbjct: 1  MVSANIKPLSEFKIGEFVQIEKIQLEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQV 60

Query: 66 SNTTIALRREESELIYGTLIG 86
          SNTTIALR+EES LI+G LIG
Sbjct: 61 SNTTIALRKEESSLIFGVLIG 81


>ref|ZP_00062018.1| COG1918: Fe2+ transport system protein A [Clostridium
          thermocellum ATCC 27405]
          Length = 79

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 44/74 (59%)

Query: 7  MAGAVIPLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRVS 66
          MAG  I L+    G K  +  + + G +RRR++DLG V    VE L++SP GDPTA+ + 
Sbjct: 1  MAGKQITLASLPIGKKARVKSLTLDGTIRRRIMDLGLVSDTIVEALQKSPSGDPTAYHIR 60

Query: 67 NTTIALRREESELI 80
             IALR EE+  I
Sbjct: 61 GAVIALRSEEASKI 74


>ref|NP_905264.1| iron dependent repressor, putative [Porphyromonas gingivalis W83]
 gb|AAQ66163.1| iron dependent repressor, putative [Porphyromonas gingivalis W83]
          Length = 310

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 7   MAGAVIPLSEAVNGSKLVISGIE--VQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFR 64
           +A   + L+    G +  I+GI    +G  RRRLLDLGFV G+ + +   SPLG+PTA+ 
Sbjct: 231 LARKTVKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYV 290

Query: 65  VSNTTIALRREESELI 80
           V  T IALRR+++  I
Sbjct: 291 VRGTAIALRRDQARYI 306


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.140    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 120,987,141
Number of extensions: 3921420
Number of successful extensions: 9669
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 9676
Number of HSP's successfully gapped: 16
Length of query: 90
Length of database: 757,237,578
Length adjustment: 59
Effective length of query: 31
Effective length of database: 597,046,737
Effective search space: 18508448847
Effective search space used: 18508448847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)