BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0562.0001.p (98 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA84277.1| protx [Bacillus subtilis] 104 7e-22 ref|NP_389764.1| phosphoenolpyruvate synthase [Bacillus subtilis... 104 8e-22 ref|NP_656978.1| PPDK_N_term, Pyruvate phosphate dikinase, PEP/p... 91 1e-17 ref|NP_979439.1| phosphoenolpyruvate synthase [Bacillus cereus A... 89 2e-17 ref|NP_832830.1| Phosphoenolpyruvate synthase [Bacillus cereus A... 85 5e-16 >emb|CAA84277.1| protx [Bacillus subtilis] Length = 855 Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 53/89 (59%), Positives = 66/89 (74%) Query: 1 LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60 L +G+ D L+KDALMT+I+R DF+KS+P+D+ AP+ R N D AQ NDP IVSDLI+ Sbjct: 384 LKGMGQHDQLLKDALMTIIKRRDFIKSIPNDKTAPNPSRGNADMPAQVENDPTIVSDLIE 443 Query: 61 HSQALIGQLKQNIQTKSGPALFDFIREDL 89 SQ I +LKQNIQTKSG LF FI ED+ Sbjct: 444 SSQTSIEELKQNIQTKSGSDLFRFILEDI 472 >ref|NP_389764.1| phosphoenolpyruvate synthase [Bacillus subtilis] pir||F69681 phosphoenolpyruvate synthase pps - Bacillus subtilis gb|AAB84457.1| PEP synthase [Bacillus subtilis] emb|CAB13775.1| phosphoenolpyruvate synthase [Bacillus subtilis subsp. subtilis str. 168] Length = 866 Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 53/89 (59%), Positives = 66/89 (74%) Query: 1 LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60 L +G+ D L+KDALMT+I+R DF+KS+P+D+ AP+ R N D AQ NDP IVSDLI+ Sbjct: 383 LKGMGQHDQLLKDALMTIIKRRDFIKSIPNDKTAPNPSRGNADMPAQVENDPTIVSDLIE 442 Query: 61 HSQALIGQLKQNIQTKSGPALFDFIREDL 89 SQ I +LKQNIQTKSG LF FI ED+ Sbjct: 443 SSQTSIEELKQNIQTKSGSDLFRFILEDI 471 >ref|NP_656978.1| PPDK_N_term, Pyruvate phosphate dikinase, PEP/pyruvate binding domain [Bacillus anthracis A2012] ref|NP_845441.1| phosphoenolpyruvate synthase [Bacillus anthracis str. Ames] gb|AAP26927.1| phosphoenolpyruvate synthase [Bacillus anthracis str. Ames] Length = 868 Score = 90.5 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 66/91 (72%), Gaps = 2/91 (2%) Query: 1 LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQ--FHNDPAIVSDL 58 +NTLG+SD L++DAL T+IER DF+ +PD++ +S P +Q NDPAIV++L Sbjct: 383 INTLGKSDPLVRDALTTIIERDDFITLLPDEEKEKSASKSKPPVSSQPEIENDPAIVTEL 442 Query: 59 IKHSQALIGQLKQNIQTKSGPALFDFIREDL 89 I++S+A + +LKQN+Q KSG +FDFI ED+ Sbjct: 443 IRNSEASLEELKQNMQLKSGVDVFDFILEDI 473 >ref|NP_979439.1| phosphoenolpyruvate synthase [Bacillus cereus ATCC 10987] gb|AAS42047.1| phosphoenolpyruvate synthase [Bacillus cereus ATCC 10987] Length = 868 Score = 89.4 bits (220), Expect = 2e-17, Method: Composition-based stats. Identities = 44/91 (48%), Positives = 67/91 (73%), Gaps = 2/91 (2%) Query: 1 LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNP--DPLAQFHNDPAIVSDL 58 +NTLG+SD L++DAL T+IER +F+ +PDD+ +S +P ++ NDPAIV++L Sbjct: 383 INTLGKSDPLVRDALTTIIERDNFITLLPDDEKEKIVSKSKQPVNPQSEIENDPAIVTNL 442 Query: 59 IKHSQALIGQLKQNIQTKSGPALFDFIREDL 89 I++S+A I +LK+N+QTKSG + DFI ED+ Sbjct: 443 IQNSEASIEELKRNMQTKSGTDVLDFILEDI 473 >ref|NP_832830.1| Phosphoenolpyruvate synthase [Bacillus cereus ATCC 14579] gb|AAP10031.1| Phosphoenolpyruvate synthase [Bacillus cereus ATCC 14579] Length = 868 Score = 84.7 bits (208), Expect = 5e-16, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 65/91 (71%), Gaps = 2/91 (2%) Query: 1 LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFH--NDPAIVSDL 58 +NTLG+SD LI+DAL T+IER +F+K + DD+ D ++ P +Q NDP IV++L Sbjct: 383 INTLGKSDPLIRDALTTVIERENFIKLLSDDEKEKDLSKNVPPASSQQQPENDPEIVTNL 442 Query: 59 IKHSQALIGQLKQNIQTKSGPALFDFIREDL 89 IK+S+ I +LK+N+QTKSG + DFI ED+ Sbjct: 443 IKNSELSIEELKRNMQTKSGVDVLDFILEDI 473 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 137,469,441 Number of extensions: 4864457 Number of successful extensions: 12133 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 12127 Number of HSP's successfully gapped: 8 Length of query: 98 Length of database: 757,237,578 Length adjustment: 66 Effective length of query: 32 Effective length of database: 578,041,044 Effective search space: 18497313408 Effective search space used: 18497313408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)