BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0034.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_843165.1| spore germination protein GerKB [Bacillus anthr... 233 8e-60 ref|NP_830450.1| Spore germination protein KB [Bacillus cereus A... 232 1e-59 ref|NP_654577.1| hypothetical protein predicted by GeneMark [Bac... 230 3e-59 ref|NP_977027.1| spore germination protein GerKB [Bacillus cereu... 228 2e-58 ref|NP_691403.1| spore germination protein [Oceanobacillus iheye... 102 1e-20 >ref|NP_843165.1| spore germination protein GerKB [Bacillus anthracis str. Ames] gb|AAP24651.1| spore germination protein GerKB [Bacillus anthracis str. Ames] Length = 368 Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 133/350 (38%), Positives = 191/350 (54%) Query: 6 QLFLFIIQAQIGVGILSLPSKLNETAKXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXXXX 65 Q F+IQ QIGVGILSLP++L+ AK Q Sbjct: 12 QFTFFVIQCQIGVGILSLPNRLHPIAKGGGWISALIAGLAIQLIILLMWLFLKRFPDADM 71 Query: 66 XXICXXXXXXXXXXXXXXVYIGYFILLGSNIMLNAVEVLRRWMLQTTPRWAVLALFSIMT 125 Y+ YF L+G +MLNA V++ W+LQ TP +A+L LF+I Sbjct: 72 YESVCMLFGNKFGKLLGFAYVFYFTLIGMTVMLNACNVIKVWVLQATPWYAILLLFTIAC 131 Query: 126 LYLAREKLTVLARFYTLASVLFIPLFLFICYGLTQAHLENMFPLLEKGVLNIIKGAKETT 185 Y+A V+ RFY +AS+L +P+ L I G ++A +FP+ E G NII+ +KET Sbjct: 132 CYIAYNTFKVIVRFYVMASILILPMALLIALGFSRADFSYIFPITEAGWWNIIQASKETI 191 Query: 186 ISMYGFELMLIIYPLSEGTDKQKLITVSLSNLFVTLFYFFVVSTCLMFFNSEQIKMIPEP 245 +MYGFE++LI +P G+ KL +S++N FVTLFY F V C + F+ +QI++IPEP Sbjct: 192 TAMYGFEIILIAFPKVNGSSVAKLKAISIANGFVTLFYTFTVWICFIVFSPKQIELIPEP 251 Query: 246 VIYLMKSLSFFIVDRADILFLPIWTVTLVCSIVSYCYAASMGFSVLFRRKSHRNFTPFVK 305 V YL++SL I+DR D+LF+PIW +T+V SI SY AAS+G +F +H+ P V Sbjct: 252 VAYLLRSLHIGIIDRTDLLFIPIWMITVVASIASYYCAASIGIGHIFNLANHKKAVPIVG 311 Query: 306 IITFIIALAPATSVGIHLLDTASTYAAYLIIGGLTPVMLIISLFIKSKGS 355 II F +AL T + ++ T + Y+ I L + L+ S+ KG Sbjct: 312 IIAFSVALFIDTPEELKVIATFTDKFTYIFIVVLPLLFLLYSVIRNKKGE 361 >ref|NP_830450.1| Spore germination protein KB [Bacillus cereus ATCC 14579] gb|AAP07651.1| Spore germination protein KB [Bacillus cereus ATCC 14579] Length = 368 Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/350 (38%), Positives = 190/350 (54%) Query: 6 QLFLFIIQAQIGVGILSLPSKLNETAKXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXXXX 65 Q F+IQ QIGVGILSLP++L+ AK Q Sbjct: 12 QFTFFVIQCQIGVGILSLPNRLHPIAKGGGWISALVAGLAIQLIILLMWLFLKRFPDADM 71 Query: 66 XXICXXXXXXXXXXXXXXVYIGYFILLGSNIMLNAVEVLRRWMLQTTPRWAVLALFSIMT 125 Y+ YF L+G +MLNA V++ W+LQ TP A+L LF+I Sbjct: 72 YESVCMLFGNKFGKLLGFAYVFYFTLIGMTVMLNACNVIKVWILQATPWSAILMLFTIAC 131 Query: 126 LYLAREKLTVLARFYTLASVLFIPLFLFICYGLTQAHLENMFPLLEKGVLNIIKGAKETT 185 Y+A V+ RFY +AS+L IP+ L I GL++A +FP+ E G NII+ +KET Sbjct: 132 CYVAYNTFKVIVRFYVMASILIIPMALLIALGLSRADFSYIFPITEAGWWNIIQASKETI 191 Query: 186 ISMYGFELMLIIYPLSEGTDKQKLITVSLSNLFVTLFYFFVVSTCLMFFNSEQIKMIPEP 245 +MYGFE++LI +P G+ KL +S++N FVTLFY F V C + F+ +QI++IPEP Sbjct: 192 TAMYGFEIILIAFPKVNGSSVAKLKAISIANGFVTLFYTFTVWICFIVFSPKQIELIPEP 251 Query: 246 VIYLMKSLSFFIVDRADILFLPIWTVTLVCSIVSYCYAASMGFSVLFRRKSHRNFTPFVK 305 V YL++SL I+DR D+LF+PIW +T+ SI SY AAS+G +F +H+ P + Sbjct: 252 VAYLLRSLHIGIIDRTDLLFIPIWMITVAASIASYYCAASIGIGHIFNLANHKKAVPIIG 311 Query: 306 IITFIIALAPATSVGIHLLDTASTYAAYLIIGGLTPVMLIISLFIKSKGS 355 II F +AL T + ++ T + Y+ I L + L+ S+ KG Sbjct: 312 IIAFSVALFIDTPEELKVISTFTDKFTYIFIVVLPLLFLLYSVIRNKKGE 361 >ref|NP_654577.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 368 Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 132/350 (37%), Positives = 190/350 (54%) Query: 6 QLFLFIIQAQIGVGILSLPSKLNETAKXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXXXX 65 Q F+IQ QIGVGILSLP++L+ AK Q Sbjct: 12 QFTFFVIQCQIGVGILSLPNRLHPIAKGGGWISALIAGLAIQLIILLMWLFLKRFPDADM 71 Query: 66 XXICXXXXXXXXXXXXXXVYIGYFILLGSNIMLNAVEVLRRWMLQTTPRWAVLALFSIMT 125 Y+ YF L+G +MLNA V++ W+LQ TP +A+L LF+I Sbjct: 72 YESVCMLFGNKFGKLLGFAYVFYFTLIGMTVMLNACNVIKVWVLQATPWYAILLLFTIAC 131 Query: 126 LYLAREKLTVLARFYTLASVLFIPLFLFICYGLTQAHLENMFPLLEKGVLNIIKGAKETT 185 Y+A V+ RFY +AS+L +P+ L I G ++A +FP+ E G NII+ +KET Sbjct: 132 CYIAYNTFKVIVRFYVMASILILPMALLIALGFSRADFSYIFPITEAGWWNIIQASKETI 191 Query: 186 ISMYGFELMLIIYPLSEGTDKQKLITVSLSNLFVTLFYFFVVSTCLMFFNSEQIKMIPEP 245 +MYGFE++LI +P G+ KL +S++N FVTLFY F V C + F+ +QI++IPEP Sbjct: 192 TAMYGFEIILIAFPKVNGSSVAKLKAISIANGFVTLFYTFTVWICFIVFSPKQIELIPEP 251 Query: 246 VIYLMKSLSFFIVDRADILFLPIWTVTLVCSIVSYCYAASMGFSVLFRRKSHRNFTPFVK 305 V YL++SL I+DR D+LF+PIW +T+V SI SY AS+G +F +H+ P V Sbjct: 252 VAYLLRSLHIGIIDRTDLLFIPIWMITVVASIASYYCXASIGIGHIFNLANHKKAVPIVG 311 Query: 306 IITFIIALAPATSVGIHLLDTASTYAAYLIIGGLTPVMLIISLFIKSKGS 355 II F +AL T + ++ T + Y+ I L + L+ S+ KG Sbjct: 312 IIAFSVALFIDTPEELKVIATFTDKFTYIFIVVLPLLFLLYSVIRNKKGE 361 >ref|NP_977027.1| spore germination protein GerKB [Bacillus cereus ATCC 10987] gb|AAS39635.1| spore germination protein GerKB [Bacillus cereus ATCC 10987] Length = 369 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 135/350 (38%), Positives = 190/350 (54%) Query: 6 QLFLFIIQAQIGVGILSLPSKLNETAKXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXXXX 65 Q F+IQ QIGVGILSLP++L+ AK Q Sbjct: 13 QFTFFVIQCQIGVGILSLPNRLHPIAKGGGWISALIAGLAIQLIILLMWFLLRRFPDATM 72 Query: 66 XXICXXXXXXXXXXXXXXVYIGYFILLGSNIMLNAVEVLRRWMLQTTPRWAVLALFSIMT 125 I +Y+ YF L+G +MLNA V++ W+LQ TP A+L L +I Sbjct: 73 YDISSIMFGNKFGKLLGFLYVLYFTLIGMTVMLNACNVIKVWVLQATPWSAILILCTIAC 132 Query: 126 LYLAREKLTVLARFYTLASVLFIPLFLFICYGLTQAHLENMFPLLEKGVLNIIKGAKETT 185 Y+A V+ RFY +AS+L IP+ L I GLT+A +FP+ E G NII+ +KET Sbjct: 133 CYIAYNTFKVIVRFYVMASILIIPMALLIALGLTRADFSYIFPITEAGWWNIIQASKETI 192 Query: 186 ISMYGFELMLIIYPLSEGTDKQKLITVSLSNLFVTLFYFFVVSTCLMFFNSEQIKMIPEP 245 +MYGFE++LI +P G +L +S++N FVTLFY F V C + F+ +Q+++IPEP Sbjct: 193 TAMYGFEIILIAFPKVNGNPVARLKAISIANGFVTLFYTFTVWICFIVFSPKQVELIPEP 252 Query: 246 VIYLMKSLSFFIVDRADILFLPIWTVTLVCSIVSYCYAASMGFSVLFRRKSHRNFTPFVK 305 V YL++SL I+DR D+LF+PIW +T+ SI SY AAS+G +F +H+ P V Sbjct: 253 VAYLLRSLHIGIIDRTDLLFIPIWMITVAASIASYYCAASIGIGHIFNLTNHKKAVPIVG 312 Query: 306 IITFIIALAPATSVGIHLLDTASTYAAYLIIGGLTPVMLIISLFIKSKGS 355 II F +AL T + +L + Y+ I L + L+ SLF KG Sbjct: 313 IIAFSVALFIDTPEELKVLAQFTDKFTYIFILILPFLFLLYSLFRNKKGE 362 >ref|NP_691403.1| spore germination protein [Oceanobacillus iheyensis HTE831] dbj|BAC12438.1| spore germination protein [Oceanobacillus iheyensis HTE831] Length = 367 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 4/300 (1%) Query: 2 ITKGQLFLFIIQAQIGVGILSLPSKLNETAKXXXXXXXXXXXXXTQXXXXXXXXXXXXXX 61 I+ LF ++Q IGVG+LSLP + +E A Q Sbjct: 7 ISSVNLFFLLVQTMIGVGLLSLPHQTHEAAGSDGWISILISGFFIQLIVLLIWLLCRNFP 66 Query: 62 XXXXXXICXXXXXXXXXXXXXXVYIGYFILLGSNIMLNAVEVLRRWMLQTTPRWAVLALF 121 +YI Y + + I + V+ L+RW+L TP W + + Sbjct: 67 NLTLFDFSKVIFGETSGTVLNFLYIIYLLTVICYIFIIYVDNLKRWILPETPAWILFLIA 126 Query: 122 SIMTLY--LAREKLTVLARFYTLASVLFIPLFLFICYGLTQAHLENMFPLLEKGVLNIIK 179 ++ +Y + K V +LF+ F+ YG + +FP+ G NI+K Sbjct: 127 FVLLIYGSICNIKNLVSLFSLLFIFILFLFFITFLVYGDPNIDVRYLFPIGSSGGWNILK 186 Query: 180 GAKETTISMYGFELMLIIYP-LSEGTDKQKLITVSLSNLFVTLFYFFVVSTCLMFFNSEQ 238 ++ IS GFE +LI + + + L V L+ LFVT+F ++V + + E+ Sbjct: 187 STSDSMISFIGFETLLIYFAFIKQSKTISALKGVFLAVLFVTIFLTYIVILSTVMLSPEE 246 Query: 239 IKMIPEPVIYLMKSLSFFIVDRADILFLPIWTVTLVCSIVSYCYAASMGFSVLFRRKSHR 298 IK PEPV+Y++ ++ I+ R D++FL W + + +I+SY ++ASMG S L K H+ Sbjct: 247 IKNTPEPVLYILSAMEIRILSRLDLIFLSFWGLIVFTTIISYTFSASMGISKLIHIK-HK 305 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.144 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 403,865,053 Number of extensions: 14801253 Number of successful extensions: 49744 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 49692 Number of HSP's successfully gapped: 46 Length of query: 358 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 231 Effective length of database: 412,420,005 Effective search space: 95269021155 Effective search space used: 95269021155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 126 (53.1 bits)