BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0019.p (612 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831580.1| Amino acid permease [Bacillus cereus ATCC 14579... 906 0.0 ref|NP_978282.1| membrane protein, putative [Bacillus cereus ATC... 887 0.0 ref|NP_388313.1| similar to hypothetical proteins [Bacillus subt... 767 0.0 ref|NP_471568.1| similar to unknown protein [Listeria innocua] >... 711 0.0 ref|NP_465654.1| similar to unknown protein [Listeria monocytoge... 710 0.0 >ref|NP_831580.1| Amino acid permease [Bacillus cereus ATCC 14579] gb|AAP08781.1| Amino acid permease [Bacillus cereus ATCC 14579] Length = 608 Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/610 (74%), Positives = 515/610 (84%), Gaps = 3/610 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M+SS+KRFLIGRPLKS +LG+QKLNKTK YGPEQIL+ L + A A+ Sbjct: 1 MVSSIKRFLIGRPLKSTELGEQKLNKTKALAILSSDALSSVAYGPEQILIALAGVGAIAY 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYSIP SYRQIIFAYPHGGGAYVVSKENLG PGL+AGGSLLVDYIL Sbjct: 61 WYSIPIAVGVLVLLTALILSYRQIIFAYPHGGGAYVVSKENLGMNPGLIAGGSLLVDYIL 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVSVSAGTDAITSAFPSLH +NV+IA+ FV++IT LNLRGVTESAS LAYPVYLFVLA Sbjct: 121 TVAVSVSAGTDAITSAFPSLHAHNVIIAVIFVILITILNLRGVTESASVLAYPVYLFVLA 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 LFILIG+G++ ILTG V LH PIGTP+AGISLFLLL+AF+SGSSALTGVEAISNAIPN Sbjct: 181 LFILIGVGIYNILTGHVSPTLHAPIGTPVAGISLFLLLRAFASGSSALTGVEAISNAIPN 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FK+PAPNNAAKTL AMG LLAVLF+GIVFLAYYYG+TP ++ TVVS IAEQ FGRNFMYY Sbjct: 241 FKDPAPNNAAKTLLAMGALLAVLFSGIVFLAYYYGVTPSKEVTVVSQIAEQTFGRNFMYY 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+QGTTALIL+LAANTGYSAFPLLAVNLAKDKFIPRMFT+RGDRLGYSN Sbjct: 301 FIQGTTALILILAANTGYSAFPLLAVNLAKDKFIPRMFTIRGDRLGYSNGIIILGVASII 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 AF+G+TEHLIPLYAVGVFIPFTLSQ+GM++KW+R+KP GWV K +N GA+ISFIV Sbjct: 361 LIVAFQGQTEHLIPLYAVGVFIPFTLSQTGMVLKWLREKPEGWVLKLTVNLIGAVISFIV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPL-AIEGNIIIL 482 MFFLTKF QVW +L+FLP II +F+RI+KHY+AV DQL + TC EPL IEGN+I++ Sbjct: 421 MSMFFLTKFAQVWSILIFLPAIIFLFHRIKKHYDAVGDQLSLKTC--EPLIPIEGNVIVV 478 Query: 483 PVAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYR 542 PVAG+THVVENSL YAKSL A+Q+IAV+V F+RE++ FEEKWK + PEVRLVTL+S YR Sbjct: 479 PVAGMTHVVENSLNYAKSLSADQVIAVYVAFDREEEKKFEEKWKVWQPEVRLVTLHSHYR 538 Query: 543 SIIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVI 602 SII PLTKFIDTVQ KASESNY+VTVV+PQFIP+KGWHNILHNQSSLL+RA+LLY+RNV+ Sbjct: 539 SIIQPLTKFIDTVQYKASESNYRVTVVIPQFIPKKGWHNILHNQSSLLIRAYLLYKRNVV 598 Query: 603 ITTVPYHLKK 612 ITTVPYHLKK Sbjct: 599 ITTVPYHLKK 608 >ref|NP_978282.1| membrane protein, putative [Bacillus cereus ATCC 10987] gb|AAS40890.1| membrane protein, putative [Bacillus cereus ATCC 10987] Length = 608 Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/610 (74%), Positives = 515/610 (84%), Gaps = 3/610 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M+SS+KRFLIGRPLKS +LG+QKLNKTK YGPEQIL+ L + A A+ Sbjct: 1 MVSSIKRFLIGRPLKSTELGEQKLNKTKALAILSSDALSSVAYGPEQILIALAGVGAIAY 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYSIP SYRQIIFAYPHGGGAYVVSKENLG PGL+AGGSLLVDYIL Sbjct: 61 WYSIPIAIGVLVLLTALILSYRQIIFAYPHGGGAYVVSKENLGMNPGLIAGGSLLVDYIL 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVSVSAGTDA+TSAFPSLH +NV+IAI FV+ IT LNLRGVTESAS LAYPVYLFVLA Sbjct: 121 TVAVSVSAGTDALTSAFPSLHAHNVIIAIIFVIFITILNLRGVTESASVLAYPVYLFVLA 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 LFILIG+G++ ILTG V LHTPIGTP+AGISLFLLL+AF+SGSSALTGVEAISNAIPN Sbjct: 181 LFILIGVGIYNILTGHVSPNLHTPIGTPVAGISLFLLLRAFASGSSALTGVEAISNAIPN 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FK+PAPNNAAKTL AMG LLAVLF+GIVFLAYYYGI+P ++ TVVS IAEQ FGRNFMYY Sbjct: 241 FKDPAPNNAAKTLLAMGALLAVLFSGIVFLAYYYGISPSKEVTVVSQIAEQTFGRNFMYY 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+QGTTALIL+LAANTGYSAFPLLAVNLAKDKFIPRMFT+RGDRLGYSN Sbjct: 301 FIQGTTALILILAANTGYSAFPLLAVNLAKDKFIPRMFTIRGDRLGYSNGIIILGIASII 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 AF+G+TEHLIPLYAVGVFIPFTLSQSGM++KW+R+KP GW + +N GA+ISFIV Sbjct: 361 LIVAFQGQTEHLIPLYAVGVFIPFTLSQSGMVLKWLREKPEGWALRLTVNLIGAVISFIV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPL-AIEGNIIIL 482 MFFLTKF QVW +L+FLP+II +F+RI+KHY+AV DQL + TC EPL IEGN+I++ Sbjct: 421 MSMFFLTKFAQVWSILIFLPVIIFLFHRIKKHYDAVGDQLSLKTC--EPLIPIEGNVIVV 478 Query: 483 PVAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYR 542 PVAG+THVVENSL YAKSL A+Q+IAV+V F+RE++ FEEKWK + PEVRLVTL+S YR Sbjct: 479 PVAGMTHVVENSLNYAKSLSADQVIAVYVAFDREEEKKFEEKWKKWQPEVRLVTLHSHYR 538 Query: 543 SIIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVI 602 SII PLTKFIDTVQ KASESNY+VTVV+PQFIP+KGWHNILHNQSSLL+RA+LLY+RNV+ Sbjct: 539 SIIQPLTKFIDTVQYKASESNYRVTVVIPQFIPKKGWHNILHNQSSLLIRAYLLYKRNVV 598 Query: 603 ITTVPYHLKK 612 ITTVPYHLKK Sbjct: 599 ITTVPYHLKK 608 >ref|NP_388313.1| similar to hypothetical proteins [Bacillus subtilis] pir||F69769 conserved hypothetical protein ydaO - Bacillus subtilis dbj|BAA19269.1| FUNCTION UNKNOWN, WEAK SIMILARITY TO YEEF_ECOLI. [Bacillus subtilis] emb|CAB12239.1| ydaO [Bacillus subtilis subsp. subtilis str. 168] Length = 607 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/611 (60%), Positives = 468/611 (76%), Gaps = 6/611 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M S+KRFLIG+PLKS+ G+QKL K K YG EQIL++L T+SAAAF Sbjct: 1 MYHSIKRFLIGKPLKSQAAGEQKLTKLKALAMLSSDALSSVAYGTEQILIILATISAAAF 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYSIP SYRQII+AYP GGGAY+VSKENLG+ PGL+AGGSLLVDYIL Sbjct: 61 WYSIPIAVGVLILLLALILSYRQIIYAYPQGGGAYIVSKENLGEKPGLIAGGSLLVDYIL 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVS+SAGTDAITSAFP+LH Y+V IAIF VL+I LNLRG++ESAS LAYPVYLFV+A Sbjct: 121 TVAVSISAGTDAITSAFPALHDYHVPIAIFLVLVIMILNLRGLSESASILAYPVYLFVVA 180 Query: 184 LFILIGLGVFRILTGSV--PAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAI 241 L +LI +G+F+++TG + PA HT +GTP+AGI+LFLLLKAFSSG SALTGVEAISNAI Sbjct: 181 LLVLIAVGLFKLMTGQIDQPAH-HTSLGTPVAGITLFLLLKAFSSGCSALTGVEAISNAI 239 Query: 242 PNFKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFM 301 P FK P NAA+TLA MG LLA+LF+GI LAY YG P+ D TVVS IA + FGRN Sbjct: 240 PAFKNPPARNAARTLAMMGILLAILFSGITVLAYGYGTAPKPDETVVSQIASETFGRNVF 299 Query: 302 YYFVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXX 361 YY +QG T+LILVLAANTG+SAFP LA NLA+D+++PRMFTVRGDRLG+SN Sbjct: 300 YYVIQGVTSLILVLAANTGFSAFPQLAFNLARDQYMPRMFTVRGDRLGFSNGIIFLGFAS 359 Query: 362 XXXXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISF 421 F G+TEHLIPLYAVGVFIPFTLSQ+GM +KWI+QKP GW+ K +IN+ GALISF Sbjct: 360 IVLIILFGGQTEHLIPLYAVGVFIPFTLSQTGMCMKWIKQKPKGWIGKMLINSCGALISF 419 Query: 422 IVTMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPLAIEGNIII 481 +V + F+TKF VWPVL+F+P+++L+F+ I+ HY AV +QLRI ++EP I+G ++I Sbjct: 420 MVLSILFVTKFNVVWPVLIFMPIVVLLFFAIKNHYTAVGEQLRI--VDKEPEEIKGTVVI 477 Query: 482 LPVAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPY 541 +PVAG+T VV+ S+ YAKSL ++Q+IAVHV F+RE + FE++W+ + VRLVTL+S Y Sbjct: 478 VPVAGVTTVVQKSIHYAKSL-SDQVIAVHVSFDREQEKKFEKRWEELNNGVRLVTLHSSY 536 Query: 542 RSIIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNV 601 RS++HP KF++TV+ KA + + V V+ PQFI +K WH ILHNQS+ LLR L +++++ Sbjct: 537 RSLVHPFDKFLETVEAKAKKEQFSVMVLFPQFITKKRWHTILHNQSAFLLRVRLFWKKDI 596 Query: 602 IITTVPYHLKK 612 ++ T+PYH KK Sbjct: 597 MVATLPYHFKK 607 >ref|NP_471568.1| similar to unknown protein [Listeria innocua] pir||AH1711 hypothetical protein homolog lin2235 [imported] - Listeria innocua (strain Clip11262) emb|CAC97464.1| lin2235 [Listeria innocua] Length = 607 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/609 (56%), Positives = 438/609 (71%), Gaps = 2/609 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M S +KR LIGRPLK+ + GDQKL K K YG EQILLVLVT+SAAA Sbjct: 1 MASPLKRLLIGRPLKTSEAGDQKLGKLKALAVLSSDALSSIAYGTEQILLVLVTVSAAAM 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYS+P SY+QII++YPHGGGAY+VS+ENLG GL+AGGSLLVDY+L Sbjct: 61 WYSLPIALCVLVLLFALNLSYKQIIYSYPHGGGAYIVSRENLGNNAGLIAGGSLLVDYML 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVSVS+GTDAI SA PSL+P+ V IA+ V+ +T +NLRG+TESAS LA PVYLFV + Sbjct: 121 TVAVSVSSGTDAIVSAVPSLYPFAVPIAVLLVVGVTIINLRGITESASLLAIPVYLFVFS 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 + LI G+F++LTG + +GT + G+++FLLL+AF+SGS++LTG+EAISNA+P Sbjct: 181 IIALIFTGLFKVLTGMDASHETAAVGTHVQGVTIFLLLRAFASGSASLTGIEAISNAVPL 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FKEP P NAAKTL M LL F GI LA+ YG P TV+S IAE VFGRNFM+Y Sbjct: 241 FKEPRPKNAAKTLTLMAGLLGFFFVGITVLAFVYGTVPELKVTVLSQIAENVFGRNFMFY 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+Q TTALILVLAANTG+SAFP+LA NLAKDKF+PRM+ RGDRLGYSN Sbjct: 301 FIQATTALILVLAANTGFSAFPMLAFNLAKDKFMPRMYLARGDRLGYSNGIITLAVGSIL 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 F+G+TE LIPLY+VGVFIPFTLSQ+GM++KW +Q+P GW N GA ISF V Sbjct: 361 LIILFKGKTELLIPLYSVGVFIPFTLSQTGMIVKWWKQRPKGWKKSLSANLLGASISFTV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPLAIEGNIIILP 483 ++ FLT+ VWPV VF+P++I +F+R R HY V QLRI + P +GN +I+ Sbjct: 421 LLVLFLTRIESVWPVFVFMPIMIYVFHRTRHHYRKVGPQLRIDETMDLP-DFKGNAVIIC 479 Query: 484 VAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYRS 543 V+ T VVE +L+YAKS+G + +IAVH+ +++ + F E+W HPEVR+ LYSPYRS Sbjct: 480 VSDTTKVVEGALQYAKSIG-DTVIAVHISIDKKQEKEFVERWNRVHPEVRMANLYSPYRS 538 Query: 544 IIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVII 603 I PL KFIDT ++KA + NY +TV++PQFIPRKGW N+LHNQ+SLL+R LL +R+V++ Sbjct: 539 ISDPLMKFIDTAKQKADQDNYSLTVLIPQFIPRKGWQNVLHNQTSLLIRTRLLMKRDVVV 598 Query: 604 TTVPYHLKK 612 +T PYHLK+ Sbjct: 599 STYPYHLKE 607 >ref|NP_465654.1| similar to unknown protein [Listeria monocytogenes EGD-e] pir||AB1341 hypothetical protein lmo2130 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00208.1| lmo2130 [Listeria monocytogenes] Length = 607 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/609 (56%), Positives = 438/609 (71%), Gaps = 2/609 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M S +KR LIGRPLK+ + GDQKL K K YG EQILLVLVT+SAAA Sbjct: 1 MASPLKRLLIGRPLKTSEAGDQKLGKLKALAVLSSDALSSIAYGTEQILLVLVTVSAAAM 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYS+P SY+QII++YPHGGGAY+VS+ENLG GL+AGGSLLVDY+L Sbjct: 61 WYSLPIALCVLVLLFALNLSYKQIIYSYPHGGGAYIVSRENLGNNAGLIAGGSLLVDYML 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVSVS+GTDAI SA PSL+P+ V IA+ V+ +T +NLRG+TESAS LA PVYLFV + Sbjct: 121 TVAVSVSSGTDAIVSAVPSLYPFAVPIAVVLVIGVTIINLRGITESASLLAIPVYLFVFS 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 + LI G+F++LTG + +GT + G+++FLLL+AF+SGS++LTG+EAISNA+P Sbjct: 181 IIALIFTGLFKVLTGMDASHETAAVGTHVQGVTIFLLLRAFASGSASLTGIEAISNAVPL 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FKEP P NAAKTL M LL F GI LA+ YG P TV+S IAE VFGRNFM+Y Sbjct: 241 FKEPRPKNAAKTLTLMAGLLGFFFVGITVLAFVYGTVPELKVTVLSQIAENVFGRNFMFY 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+Q TTALILVLAANTG+SAFP+LA NLAKDKF+PRM+ RGDRLGYSN Sbjct: 301 FIQATTALILVLAANTGFSAFPMLAFNLAKDKFMPRMYLARGDRLGYSNGIITLAVGSIL 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 F+G+TE LIPLY+VGVFIPFTLSQ+GM++KW +Q+P GW N GA ISF V Sbjct: 361 LIILFKGKTELLIPLYSVGVFIPFTLSQTGMIVKWWKQRPKGWKKSLSANLLGASISFTV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPLAIEGNIIILP 483 ++ FLT+ VWPV VF+P++I +F+R R HY V QLRI + P +GN +I+ Sbjct: 421 LLVLFLTRIESVWPVFVFMPIMIYVFHRTRHHYRKVGPQLRIDETMDLP-DFKGNAVIIC 479 Query: 484 VAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYRS 543 V+ T VVE +L+YAKS+G + +IAVH+ +++ + F E+W HPEVR+ L+SPYRS Sbjct: 480 VSDTTKVVEGALQYAKSIG-DTVIAVHISIDKKQEKEFVERWNRVHPEVRMANLFSPYRS 538 Query: 544 IIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVII 603 I PL KFIDT ++KA + NY +TV++PQFIPRKGW N+LHNQ+SLL+R LL +R+V++ Sbjct: 539 ISDPLMKFIDTAKQKADQDNYSLTVLIPQFIPRKGWQNVLHNQTSLLIRTRLLMKRDVVV 598 Query: 604 TTVPYHLKK 612 +T PYHLK+ Sbjct: 599 STYPYHLKE 607 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 793,734,531 Number of extensions: 30672149 Number of successful extensions: 108483 Number of sequences better than 1.0e-05: 85 Number of HSP's gapped: 108367 Number of HSP's successfully gapped: 85 Length of query: 612 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 480 Effective length of database: 398,844,510 Effective search space: 191445364800 Effective search space used: 191445364800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)