BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0017.p (252 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_781093.1| ABC transporter ATP-binding protein [Clostridiu... 271 1e-71 ref|NP_347013.1| ABC transporter, ATP binding protein [Clostridi... 270 3e-71 ref|NP_348145.1| ABC-type transport system, ATPase component [Cl... 270 3e-71 ref|NP_834531.1| ABC transporter ATP-binding protein [Bacillus c... 268 7e-71 ref|NP_243565.1| ABC transporter (ATP-binding protein) [Bacillus... 268 8e-71 >ref|NP_781093.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO35030.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 256 Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 124/248 (50%), Positives = 187/248 (75%) Query: 1 LDVITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDR 60 + V+ ++ + K+Y K A+D S ++KG+FVG+MGPSGSGKTTLLNI++ +D Sbjct: 1 MSVLKVENITKIYGGKKGGPVFKALDRFSLEIKKGEFVGVMGPSGSGKTTLLNIMATIDT 60 Query: 61 ATSGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPE 120 +SGE++I+G + KL++ +ALFRR +G+IFQDFNLL+SL+++ENI LPL+L+K Sbjct: 61 PSSGELFINGTNPTKLNEKNIALFRRKELGFIFQDFNLLDSLSIKENIILPLVLEKVKVR 120 Query: 121 EIEEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKS 180 EIE+++ + L I + +K PY ISGGQ+Q+ A ARA+I P+++LADEPTGNLDSK+ Sbjct: 121 EIEKRVEDIASLLNIKDILNKKPYEISGGQQQRAACARALIHNPSIILADEPTGNLDSKA 180 Query: 181 ARQLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKI 240 ++ +M+TLT+LN + +TI+MVTHDPF+ASFC+RII I+DG LEI + G+R+ F +I Sbjct: 181 SQDVMETLTNLNSKKEATIMMVTHDPFSASFCKRIIMIKDGKYFLEIVNGGNRQTFFKEI 240 Query: 241 LEAQSVIG 248 +++ S++G Sbjct: 241 MDSLSLLG 248 >ref|NP_347013.1| ABC transporter, ATP binding protein [Clostridium acetobutylicum] pir||F96945 ABC transporter, ATP binding protein CAC0373 [imported] - Clostridium acetobutylicum gb|AAK78353.1| ABC transporter, ATP binding protein [Clostridium acetobutylicum] Length = 254 Score = 270 bits (689), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 121/248 (48%), Positives = 179/248 (72%) Query: 3 VITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDRAT 62 V+ + + KVY + A++G+S N+E G+F IMGPSGSGKTTLLNILSG+D AT Sbjct: 3 VLQAENVTKVYGGRLEVNSNNALNGISLNIEDGEFTAIMGPSGSGKTTLLNILSGIDEAT 62 Query: 63 SGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPEEI 122 G++ I G+DI K ++D+MA+FRR +G I QDFNLL+ LTLEEN LPL + S E + Sbjct: 63 RGKIKIMGKDITKFTRDEMAIFRRENLGIISQDFNLLDDLTLEENAVLPLFIKDDSSENV 122 Query: 123 EEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKSAR 182 ++++ L +F I ++KYP+++SGGQ+Q+ AA RA+I+ P +++ADEPTGNLDSK++ Sbjct: 123 KDRVEELFKFFNIWEQRNKYPHNVSGGQQQRAAACRALITNPKIVMADEPTGNLDSKAST 182 Query: 183 QLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKILE 242 + M + +NE STI+MVTHD +AASFC+R++FI+DG + EIR ++ F ++IL+ Sbjct: 183 KFMKYMQMINENRNSTIIMVTHDSYAASFCKRVLFIKDGKMYTEIRKKEGKEDFFNRILD 242 Query: 243 AQSVIGGD 250 ++IGG+ Sbjct: 243 CLAIIGGE 250 >ref|NP_348145.1| ABC-type transport system, ATPase component [Clostridium acetobutylicum] pir||B97087 ABC-type transport system, ATPase component CAC1518 [imported] - Clostridium acetobutylicum gb|AAK79485.1| ABC-type transport system, ATPase component [Clostridium acetobutylicum] Length = 255 Score = 270 bits (689), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 127/249 (51%), Positives = 184/249 (73%) Query: 1 LDVITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDR 60 + V+ + + KVY + V A+D S VEKG+FVG+MGPSGSGK+TLLNIL+ +D Sbjct: 1 MSVLKAENITKVYGDKRGGLKVRALDKFSIKVEKGEFVGVMGPSGSGKSTLLNILATIDT 60 Query: 61 ATSGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPE 120 +SGE++I+G ++ +L + + ALFRR +G+IFQDFNLL+SL+++ENI LPL+L++ + Sbjct: 61 PSSGELFINGVNLAELDEKKAALFRRKELGFIFQDFNLLDSLSIKENIILPLVLERTRVK 120 Query: 121 EIEEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKS 180 EIEE+L + + L I G+ +K PY SGGQ+Q+ A ARA+I P ++LADEPTGNLDSK+ Sbjct: 121 EIEERLNSISEILNIKGILEKRPYETSGGQQQRAACARALIHNPTLILADEPTGNLDSKA 180 Query: 181 ARQLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKI 240 ++ +M+ L +LN + +TI+MVTHDPFAASFC+RI+ I+DG LEI +R F +I Sbjct: 181 SQDVMEALENLNNEKKTTIMMVTHDPFAASFCKRIVMIKDGKHFLEIVKGSNRGVFFKEI 240 Query: 241 LEAQSVIGG 249 ++A +VIGG Sbjct: 241 MDALTVIGG 249 >ref|NP_834531.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP11732.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 256 Score = 268 bits (686), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 128/248 (51%), Positives = 184/248 (74%), Gaps = 3/248 (1%) Query: 3 VITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDRAT 62 V+ + KVY+ AA+ G++ V++G+FVGIMGPSGSGKTTLLN+LS +D AT Sbjct: 4 VLEAKNIEKVYDT--GGNKFAALKGINLQVKEGEFVGIMGPSGSGKTTLLNVLSTIDNAT 61 Query: 63 SGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPEEI 122 +GE+ IDG+DI+K++ D++ALFRR +G+IFQD+NLL++LT++ENIALPL L K EI Sbjct: 62 NGEILIDGKDIVKMNDDKLALFRRDHLGFIFQDYNLLDTLTVKENIALPLALSKVKASEI 121 Query: 123 EEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKSAR 182 + +++ + + GI + ++PY +SGGQKQ+ AA+RA+++ P+++ DEPTG LDSKSA Sbjct: 122 DRRVLEISKKFGIDHILSQFPYQVSGGQKQRCAASRAIVTNPSMIFGDEPTGALDSKSAT 181 Query: 183 QLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEI-RSPGDRKQFLDKIL 241 L++++ SLNE STILMVTHD FAAS+C+R+IFI+DG + E+ R RKQF KI+ Sbjct: 182 DLLESMKSLNEYDNSTILMVTHDAFAASYCKRVIFIKDGELYKELHRGESTRKQFFQKIV 241 Query: 242 EAQSVIGG 249 + S I G Sbjct: 242 DVMSSISG 249 >ref|NP_243565.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||C83987 ABC transporter (ATP-binding protein) BH2699 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06418.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 251 Score = 268 bits (685), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 120/247 (48%), Positives = 182/247 (73%), Gaps = 1/247 (0%) Query: 3 VITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDRAT 62 ++ + L KVY + +D +S V+KGDF+ IMGPSGSGKTTLLN+LSG+D T Sbjct: 3 ILEANHLHKVYGE-GGTRTTVGLDQVSLRVKKGDFLAIMGPSGSGKTTLLNLLSGIDAPT 61 Query: 63 SGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPEEI 122 SG + I+G DI K+ +Q+ALFRR +G++FQ+FNLL+SLT++ENI +P+IL+K+S + + Sbjct: 62 SGTIVINGDDISKMDGNQLALFRRKELGFVFQEFNLLDSLTVKENIMVPMILEKKSAKHM 121 Query: 123 EEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKSAR 182 EEK +M GI GL +KYPYH+SGGQ+Q+VA +RA+++EP+++ ADEPTGNLDSKS++ Sbjct: 122 EEKAKEVMSIFGIDGLANKYPYHLSGGQQQRVAVSRALVNEPSILFADEPTGNLDSKSSK 181 Query: 183 QLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKILE 242 +M+ + +TIL+VTHD FAA++C ++FI DG + ++ G +FLD+I++ Sbjct: 182 VIMECFEQIVNHYQTTILLVTHDVFAANYCHHVMFINDGTIHSKLTKKGSNAEFLDQIMD 241 Query: 243 AQSVIGG 249 + +++GG Sbjct: 242 SLALLGG 248 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 360,281,731 Number of extensions: 14678368 Number of successful extensions: 118987 Number of sequences better than 1.0e-05: 22170 Number of HSP's gapped: 96649 Number of HSP's successfully gapped: 23743 Length of query: 252 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 129 Effective length of database: 423,280,401 Effective search space: 54603171729 Effective search space used: 54603171729 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)