BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0007.p (124 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00098073.1| COG0791: Cell wall-associated hydrolases (inv... 125 3e-28 ref|ZP_00103944.1| COG0791: Cell wall-associated hydrolases (inv... 113 1e-24 ref|NP_622532.1| Cell wall-associated hydrolases (invasion-assoc... 112 2e-24 ref|NP_244538.1| cell wall lytic activity [Bacillus halodurans] ... 112 3e-24 ref|NP_249889.1| conserved hypothetical protein [Pseudomonas aer... 111 5e-24 >ref|ZP_00098073.1| COG0791: Cell wall-associated hydrolases (invasion-associated proteins) [Desulfitobacterium hafniense] Length = 212 Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/109 (57%), Positives = 82/109 (75%), Gaps = 2/109 (1%) Query: 4 VLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDLVF 63 ++GTPYV+GGTT GFDCSGF Y+ K + DLPRT+ +Q GT VSKD+L++GDLVF Sbjct: 105 LIGTPYVFGGTTTNGFDCSGFTQYVF-KGSGIDLPRTSYAQYGIGTAVSKDELQIGDLVF 163 Query: 64 FNTFGNGVSHAGIYIGDGQFAHSSSSKGVRISKLSDSYYRDRYVTARRV 112 F T+ +G SH GIYIG+ F H++ S G++I+ LSDSYY RY+ ARRV Sbjct: 164 FATYDSGASHVGIYIGEENFIHAARS-GIKITGLSDSYYAGRYLGARRV 211 >ref|ZP_00103944.1| COG0791: Cell wall-associated hydrolases (invasion-associated proteins) [Desulfitobacterium hafniense] Length = 285 Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/107 (53%), Positives = 79/107 (73%), Gaps = 2/107 (1%) Query: 6 GTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDLVFFN 65 GT YV+GGT+ +GFDCSGF YI + LPRT+ Q +G+ VSKD+L+ GDLVFF+ Sbjct: 179 GTKYVFGGTSTSGFDCSGFTKYIYSG-SGISLPRTSFDQFNSGSSVSKDNLQAGDLVFFS 237 Query: 66 TFGNGVSHAGIYIGDGQFAHSSSS-KGVRISKLSDSYYRDRYVTARR 111 T+ +G SH GIYIG+G+F H+++ GV++S +SDS+Y RY+ ARR Sbjct: 238 TYASGASHVGIYIGNGKFVHAANPGSGVKVSGVSDSFYGPRYLGARR 284 >ref|NP_622532.1| Cell wall-associated hydrolases (invasion-associated proteins) [Thermoanaerobacter tengcongensis] gb|AAM24136.1| Cell wall-associated hydrolases (invasion-associated proteins) [Thermoanaerobacter tengcongensis] Length = 306 Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 3/111 (2%) Query: 5 LGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDLVFF 64 LGT YV+GG++ GFDCSGF+ Y+ F LPRT QA G V++D L GDLVFF Sbjct: 196 LGTRYVYGGSSPKGFDCSGFVSYVFSNFGF-SLPRTADEQANVGDTVTRDSLEKGDLVFF 254 Query: 65 NTFGNG-VSHAGIYIGDGQFAHSSSSKG-VRISKLSDSYYRDRYVTARRVV 113 T G+ ++H GIYIGDGQF H+SS G V IS L++ YY YV A+RV+ Sbjct: 255 RTLGSSIINHVGIYIGDGQFIHASSGAGKVIISPLNEGYYLSHYVKAKRVI 305 >ref|NP_244538.1| cell wall lytic activity [Bacillus halodurans] pir||G84108 cell wall lytic activity lytE [imported] - Bacillus halodurans (strain C-125) dbj|BAB07390.1| cell wall lytic activity [Bacillus halodurans] Length = 416 Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 56/109 (51%), Positives = 75/109 (68%), Gaps = 4/109 (3%) Query: 4 VLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDLVF 63 ++GTPYVWGGTT GFDCSGF+ Y+ + +PRT AGT VS+ + GD+VF Sbjct: 311 LIGTPYVWGGTTPRGFDCSGFVQYVFAQQGV-SIPRTVAQMWNAGTSVSQPSV--GDIVF 367 Query: 64 FNTFGNGVSHAGIYIGDGQFAHSSSSKGVRISKLSDSYYRDRYVTARRV 112 F+T G G SH GIYIG+ QF HS SS GV I+ +++SY+ RY+ A+R+ Sbjct: 368 FDTTG-GPSHNGIYIGNNQFIHSGSSTGVTIASMNNSYWASRYLGAKRL 415 >ref|NP_249889.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01] pir||B83495 conserved hypothetical protein PA1198 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG04587.1| conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 205 Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 60/114 (52%), Positives = 77/114 (67%), Gaps = 4/114 (3%) Query: 4 VLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTE-VSKDDLRLGDLV 62 ++GTPY +GGTTA GFDCSGF+ Y+ + LPR+T VSKD+L+ GDL+ Sbjct: 80 LIGTPYRFGGTTAKGFDCSGFVGYLFREEAGIKLPRSTRELIDMDVPLVSKDELQPGDLL 139 Query: 63 FFNTFGNG-VSHAGIYIGDGQFAHSSSSK--GVRISKLSDSYYRDRYVTARRVV 113 FFN G G VSHAGIYIGDGQF HS+S + GVR+ L SY+ Y+ A+RV+ Sbjct: 140 FFNNRGRGRVSHAGIYIGDGQFIHSASRRGGGVRVDSLDSSYWSLSYMEAKRVL 193 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 187,032,629 Number of extensions: 7287097 Number of successful extensions: 16007 Number of sequences better than 1.0e-05: 421 Number of HSP's gapped: 15367 Number of HSP's successfully gapped: 425 Length of query: 124 Length of database: 757,237,578 Length adjustment: 88 Effective length of query: 36 Effective length of database: 518,308,866 Effective search space: 18659119176 Effective search space used: 18659119176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)