BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0002.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_626137.1| hypothetical protein SCI39.17c [Streptomyces co... 99 8e-20 ref|NP_827566.1| hypothetical protein [Streptomyces avermitilis ... 91 3e-17 ref|ZP_00056989.1| COG3506: Uncharacterized conserved protein [T... 89 7e-17 ref|ZP_00065879.1| hypothetical protein [Microbulbifer degradans... 82 1e-14 ref|ZP_00127398.1| COG3506: Uncharacterized conserved protein [P... 71 2e-11 >ref|NP_626137.1| hypothetical protein SCI39.17c [Streptomyces coelicolor A3(2)] emb|CAC38805.1| hypothetical protein SCI39.17c [Streptomyces coelicolor A3(2)] Length = 202 Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Query: 53 VSEEGATPSTLANAPFFFTEVSGDFVMRVKVQHDFKDIYDSASVMVMKDINVWAKLCFEL 112 V G + ++++AP GDF + +V F+ +D+ + V WAKLC E Sbjct: 40 VPPTGESLESVSDAPRLLGAPDGDFQLIARVSVGFRGAFDAGVLYVHVGERAWAKLCLEY 99 Query: 113 TDFNTHAVVSVVTNPLSDDANGNNIDSNSVWLQITRVGQSFAFHYSLTGTQFYMARFFNL 172 + + V +VVT SDD N ++ +SVW +++R G++FAFH SL G ++ R F L Sbjct: 100 SP-DVPTVCTVVTRGHSDDCNSFTVEGDSVWFRVSRTGRAFAFHASLDGERWTFVRLFTL 158 Query: 173 PVEE---TVKVGFVPQAPTGKGGDRIYSNFSLENKTVKNIRAG 212 EE + VGF+ QAPTG+G Y + ++R G Sbjct: 159 GDEEETGSALVGFLAQAPTGEGCTVTYDHLEFRPAWPADLRDG 201 >ref|NP_827566.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC74101.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 202 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 64 ANAPFFFTEVSGDFVMRVKVQHDFKDIYDSASVMVMKDINVWAKLCFELTDFNTHAVVSV 123 A+AP GDF + +V F +D+ + V WAKLC E + + V +V Sbjct: 51 ADAPRLLGAPEGDFQLIARVTVGFAASFDAGVLYVHVGERAWAKLCLEYSP-DVPTVCTV 109 Query: 124 VTNPLSDDANGNNIDSNSVWLQITRVGQSFAFHYSLTGTQFYMARFFNLPVE---ETVKV 180 VT SDDAN ++ +SVWL+I+R G++FAFH S G + R F L E V Sbjct: 110 VTRGHSDDANSFTVEGSSVWLRISRTGRAFAFHASRDGEHWTFVRLFTLADEGPASAALV 169 Query: 181 GFVPQAPTGKGGDRIYSNFSLENKTVKNIRAG 212 GF+ Q+P G+G + + + + + +R G Sbjct: 170 GFMAQSPVGEGCVVTFDHLAYRDSWPQGLRDG 201 >ref|ZP_00056989.1| COG3506: Uncharacterized conserved protein [Thermobifida fusca] Length = 284 Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 13/182 (7%) Query: 34 EAMILHAPEHSDFFCN-NGAVSEEGATPSTLANAPFFFTEVSGDFVMRVKVQHDFKDIYD 92 +++ + A +D F + NG V +ANAP + GDF + +V YD Sbjct: 114 DSLCITAGARTDVFSDPNGTVR--------IANAPALLAGLDGDFTLAARVSPSLHATYD 165 Query: 93 SASVMVMKDINVWAKLCFELTDFNTHAVVSVVT-NPLSDDANGNNIDSNSVWLQITRVGQ 151 + + + D + AKLC EL+ +VSVVT + +SDD N ++ ++ L+ITR G Sbjct: 166 AGVLFLYVDEDNHAKLCLELSPQGQPTIVSVVTRDGVSDDCNSLAVEGEAM-LRITRTGG 224 Query: 152 SFAFHYSLTGTQFYMARFFNLPVEETVKVGFVPQAPTGKGGDRIYSNFSLENKTVKNIRA 211 ++AFH +L +++ R+F LP + GF+ Q+PTG+G ++ + + ++R Sbjct: 225 AYAFHTNLGDGWWHLIRYFALP--GPARAGFLAQSPTGEGQTVHFTEIAYTSAPPADLRG 282 Query: 212 GE 213 G+ Sbjct: 283 GQ 284 >ref|ZP_00065879.1| hypothetical protein [Microbulbifer degradans 2-40] Length = 235 Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 70/149 (46%) Query: 65 NAPFFFTEVSGDFVMRVKVQHDFKDIYDSASVMVMKDINVWAKLCFELTDFNTHAVVSVV 124 N P E DF++ KV F YD ++V N WAKL E T V S V Sbjct: 87 NVPRLLFEAKSDFILSAKVTSQFGADYDGGGLLVYAGENQWAKLLIEQVPNKTLLVSSSV 146 Query: 125 TNPLSDDANGNNIDSNSVWLQITRVGQSFAFHYSLTGTQFYMARFFNLPVEETVKVGFVP 184 TN D A I+ ++L+I R+ + F+ SL G + + R F L + K+GF Sbjct: 147 TNTKGDGAYHAVINQPYIYLKIVRLTNRYFFYSSLNGKDWQILRDFALGENKNAKIGFYN 206 Query: 185 QAPTGKGGDRIYSNFSLENKTVKNIRAGE 213 QAP G+ + ++S S T+K+ GE Sbjct: 207 QAPIGEKIETLFSEISFRETTIKSYWQGE 235 >ref|ZP_00127398.1| COG3506: Uncharacterized conserved protein [Pseudomonas syringae pv. syringae B728a] Length = 205 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 14/196 (7%) Query: 18 FENFNWLN-PGSIRFENEAMILHAPEHSDFF--CNNGAVSEEGATPSTLANAPFFFTEVS 74 F+ WLN P +E + + +DF+ + G + G F V+ Sbjct: 16 FDKGIWLNQPRHCSVTDERLTVTTDPQTDFWQQTHYGFCRDTGH---------FLGVSVT 66 Query: 75 GDFVMRVKVQHDFKDIYDSASVMVMKDINVWAKLCFELTDFNTHAVVSVVTNPLSDDANG 134 GDF +V VQ DFK +YD A +MV D W K E++D + SV+T SD A G Sbjct: 67 GDFTAQVHVQGDFKTLYDQAGLMVRIDERNWVKTGVEVSD-GALMLGSVLTCGQSDWATG 125 Query: 135 NNIDSNS-VWLQITRVGQSFAFHYSLTGTQFYMARFFNLPVEETVKVGFVPQAPTGKGGD 193 +S+S +WL++T +S G ++ + R PV + KVG + +P G + Sbjct: 126 VFDESSSGLWLRVTVAKGVLRIQHSSDGLRWPLLRLAPFPVSDVYKVGPMCCSPERGGLE 185 Query: 194 RIYSNFSLENKTVKNI 209 ++S+F + K++ Sbjct: 186 VVFSHFEVMPALGKDL 201 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 347,796,765 Number of extensions: 14089038 Number of successful extensions: 27483 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 27483 Number of HSP's successfully gapped: 12 Length of query: 213 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 93 Effective length of database: 431,425,698 Effective search space: 40122589914 Effective search space used: 40122589914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)