BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0097.p
         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_785353.1| unknown [Lactobacillus plantarum WCFS1] >gi|282...    58   8e-08
emb|CAC51107.1| putative GIY-YIG endonuclease [Bacillus sp. BSG40]     55   5e-07
ref|NP_464257.1| lmo0730 [Listeria monocytogenes EGD-e] >gi|2551...    53   2e-06

>ref|NP_785353.1| unknown [Lactobacillus plantarum WCFS1]
 emb|CAD64202.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 123

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 8/124 (6%)

Query: 1   MEKSKRKELAYNYAHSHRPMGVYRIVNTRNDKVFVGSSINLDGVWNKHKFMLDIGNHENK 60
           M+  ++  L   Y  +    GV +I N RN K+++ +  NL   W  ++  L+   + + 
Sbjct: 1   MQPVEKHRLQQKYKLAPTYYGVIQITNERNHKIWIDTVPNLHNRWAFYQLNLNKNFYRSN 60

Query: 61  ALQADWKEFGEQAFVFEILERIKPEEDFVAEVSELAKYRKLLPDLENKWLEQLSPYGERG 120
            LQADW +     F ++IL        +  E +++   R  L  L+ KWL  L P+ + G
Sbjct: 61  PLQADWNQQTAADFSYQIL--------WQKETTDVTNMRATLKALKTKWLHDLQPFDDHG 112

Query: 121 YLKK 124
           Y ++
Sbjct: 113 YNRR 116


>emb|CAC51107.1| putative GIY-YIG endonuclease [Bacillus sp. BSG40]
          Length = 243

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 21  GVYRIVNTRNDKVFVGSSINLDGVWNKHKFMLDIGNHENKALQADWKEFGEQAFVFEILE 80
            VY+I N +N K ++GSS N      +H  +L  G+H NK LQ D+  +GE  F+FE+L 
Sbjct: 3   AVYKIRNIKNGKFYIGSSANFRKRKTEHLRLLKSGSHHNKPLQEDFNTYGENNFLFEVL- 61

Query: 81  RIKPEEDFVAEVSELAKYRKLLPDLENKWLEQL 113
                 D++       K ++ L + E + L  L
Sbjct: 62  ---YHSDYINRFDLYKKEQEFLSNSEKEQLYNL 91


>ref|NP_464257.1| lmo0730 [Listeria monocytogenes EGD-e]
 pir||AB1166 hypothetical protein lmo0730 [imported] - Listeria monocytogenes
          (strain EGD-e)
 emb|CAC98808.1| lmo0730 [Listeria monocytogenes]
          Length = 112

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1  MEKSKRKELAYNYAHSHRPMGVYRIVNTRNDKVFVGSSINLDGVWNKHKFMLDI--GNHE 58
          M K  RKEL   Y       GVYR ++T++ K  + ++++L G+ NK  F + I  GN  
Sbjct: 1  MNKDNRKELIRAYKEKSPDAGVYRFISTKSGKSLIDNTMDLKGIANKLAFGVKIGAGNML 60

Query: 59 NKALQADWKEFGEQAFVFEILER--IKPE 85
             +  + KE G     FEILE+  IKPE
Sbjct: 61 PPEMAKEAKEHGIDTIQFEILEKVDIKPE 89


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 199,825,495
Number of extensions: 7538593
Number of successful extensions: 20905
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 20906
Number of HSP's successfully gapped: 6
Length of query: 125
Length of database: 757,237,578
Length adjustment: 89
Effective length of query: 36
Effective length of database: 515,593,767
Effective search space: 18561375612
Effective search space used: 18561375612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)