BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0088.p
         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAJ82651.1| unknown [environmental sequence]                       153   1e-36
ref|ZP_00172917.1| hypothetical protein Mflag122201 [Methylobaci...   147   5e-35
gb|EAH90163.1| unknown [environmental sequence]                       147   6e-35
gb|AAO38268.1| Lfe103p1 [Leptospirillum ferrooxidans]                 146   1e-34
ref|ZP_00013531.1| COG2308: Uncharacterized conserved protein [R...   145   2e-34

>gb|EAJ82651.1| unknown [environmental sequence]
          Length = 468

 Score =  153 bits (387), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/117 (62%), Positives = 92/117 (78%), Gaps = 1/117 (0%)

Query: 1   VLDHLKEMVVKETSLSGGYGMLIGSEASKDELADFRLKILADPARYIAQPIMSLSRAPVL 60
           VLD+L ++VVKE   SGGYGMLIGS A+K ++  F+ KI ++P  YIAQP++SLS  P+ 
Sbjct: 351 VLDNLNKLVVKEVHGSGGYGMLIGSAATKSKIDLFKSKIKSNPDNYIAQPVLSLSSVPIF 410

Query: 61  SGGRMTPRHIDLRAFVLMGADRKPHVIPGGLTRVAMKEGSLVVNSSQGGGVKDTWVM 117
               +TPRH+DLR F L+G  RK  ++PGGLTRVA+KEGSLVVNSSQGGGVKDTWV+
Sbjct: 411 KKDSLTPRHVDLRPFTLLG-HRKRRLVPGGLTRVALKEGSLVVNSSQGGGVKDTWVL 466


>ref|ZP_00172917.1| hypothetical protein Mflag122201 [Methylobacillus flagellatus KT]
          Length = 473

 Score =  147 bits (372), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 88/117 (75%), Gaps = 2/117 (1%)

Query: 1   VLDHLKEMVVKETSLSGGYGMLIGSEASKDELADFRLKILADPARYIAQPIMSLSRAPVL 60
           VLD+L E+VVKE   SGGYGML+G  ASK EL DFR +ILA+PA YIAQP ++LS  P L
Sbjct: 357 VLDNLAELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTL 416

Query: 61  SGGRMTPRHIDLRAFVLMGADRKPHVIPGGLTRVAMKEGSLVVNSSQGGGVKDTWVM 117
               + PRH+DLR FVL G  +   ++PG L RVA++EGSLVVNSSQGGG KDTW++
Sbjct: 417 VETGIAPRHVDLRPFVLSG--KTVSLVPGALCRVALREGSLVVNSSQGGGTKDTWIL 471


>gb|EAH90163.1| unknown [environmental sequence]
          Length = 471

 Score =  147 bits (372), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 90/118 (76%), Gaps = 2/118 (1%)

Query: 1   VLDHLKEMVVKETSLSGGYGMLIGSEASKDELADFRLKILADPARYIAQPIMSLSRAPVL 60
           VLDHL E+VVKE   SGGYGML+G  ASK EL  F  K+ A PA YIAQP ++LS  P+L
Sbjct: 355 VLDHLDELVVKEVHGSGGYGMLVGPCASKAELEAFSAKLRARPANYIAQPTLALSTTPIL 414

Query: 61  SGGRMTPRHIDLRAFVLMGADRKPHVIPGGLTRVAMKEGSLVVNSSQGGGVKDTWVMA 118
           +   + PRH+DLR FVL+ +DR   + PGGLTRVA+KEGSLVVNSSQGGG KDTWV+A
Sbjct: 415 TEAGLAPRHVDLRPFVLV-SDRI-RITPGGLTRVALKEGSLVVNSSQGGGTKDTWVLA 470


>gb|AAO38268.1| Lfe103p1 [Leptospirillum ferrooxidans]
          Length = 128

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 88/117 (75%), Gaps = 2/117 (1%)

Query: 1   VLDHLKEMVVKETSLSGGYGMLIGSEASKDELADFRLKILADPARYIAQPIMSLSRAPVL 60
           VLDH+ E+VVKE   SGGYGML+G  +S+ E+ ++R +IL+DP  +IAQP +SLS  P  
Sbjct: 11  VLDHIAELVVKEVGGSGGYGMLVGPASSQAEIENYRKRILSDPGNFIAQPTLSLSTCPTF 70

Query: 61  SGGRMTPRHIDLRAFVLMGADRKPHVIPGGLTRVAMKEGSLVVNSSQGGGVKDTWVM 117
               + PRH+DLR FVL G +    ++PGGLTRVA+KEGSLVVNSSQGGG KDTW++
Sbjct: 71  VNSGIAPRHVDLRPFVLSGTNVS--MVPGGLTRVALKEGSLVVNSSQGGGTKDTWIL 125


>ref|ZP_00013531.1| COG2308: Uncharacterized conserved protein [Rhodospirillum rubrum]
          Length = 316

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 1   VLDHLKEMVVKETSLSGGYGMLIGSEASKDELADFRLKILADPARYIAQPIMSLSRAPVL 60
           VL+HL E+VVKE   SGGYGML+G  AS+ +++D+R +ILADPA +IAQP ++LS  P  
Sbjct: 200 VLEHLAELVVKEVHGSGGYGMLVGPRASRQQISDYRDRILADPANFIAQPTLALSTCPTF 259

Query: 61  SGGRMTPRHIDLRAFVLMGADRKPHVIPGGLTRVAMKEGSLVVNSSQGGGVKDTWVM 117
               + PRH+DLR FVL G  +   V+PGGLTRVA+++ SLVVNSSQGGG KDTWV+
Sbjct: 260 VDQGLAPRHVDLRPFVLAG--KTTQVVPGGLTRVALEKDSLVVNSSQGGGTKDTWVL 314


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 174,462,659
Number of extensions: 6335475
Number of successful extensions: 13228
Number of sequences better than 1.0e-05: 239
Number of HSP's gapped: 13021
Number of HSP's successfully gapped: 239
Length of query: 118
Length of database: 757,237,578
Length adjustment: 83
Effective length of query: 35
Effective length of database: 531,884,361
Effective search space: 18615952635
Effective search space used: 18615952635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)