BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0087.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ29143.1| unknown [environmental sequence] 309 7e-83 ref|ZP_00118156.1| COG2308: Uncharacterized conserved protein [C... 308 2e-82 ref|ZP_00030114.1| COG2308: Uncharacterized conserved protein [B... 308 2e-82 ref|ZP_00018871.1| hypothetical protein [Chloroflexus aurantiacus] 307 3e-82 ref|NP_295765.1| conserved hypothetical protein [Deinococcus rad... 307 3e-82 >gb|EAJ29143.1| unknown [environmental sequence] Length = 485 Score = 309 bits (792), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 156/331 (47%), Positives = 206/331 (62%), Gaps = 3/331 (0%) Query: 57 YDEMYADERSIRPHYKHVNRMFSGMSPEEXXXXXXXXXXXXXXXGITFTLYNPAQDHPME 116 YDEM + ++RPHY R E GITF + E Sbjct: 20 YDEMRHHDDAVRPHYARFERWLVKQGNEAIARKRAEADLLFRRVGITFAVNGDLSG--TE 77 Query: 117 RTIPFDMIPRIIPKGEWERLEAGIVQRITALNLFIHDIYHEQFIVKDGIVPRRMIISNCY 176 R IPFD+IPRIIP+ EW+ LEAG+ QR+ ALNLFIHD+YH++ IV+ GIVP + +N Sbjct: 78 RLIPFDLIPRIIPRSEWQTLEAGLRQRVQALNLFIHDVYHDRNIVRAGIVPAEQVYTNAQ 137 Query: 177 FRPEMSGLRVPGGAYVTTSGIDLIRHHD-GEYYVLEDNLRTPSGFSYLFKGRSLMNQLFP 235 +RPEM G+ VP G Y +G+D++R D GE+YVLEDNLR PSG SY+ + R +M +LFP Sbjct: 138 YRPEMQGVNVPLGVYAHIAGVDVVRAGDEGEFYVLEDNLRVPSGVSYMLENRKMMMRLFP 197 Query: 236 ELSLASSIRDVDHSLNRFLSVLRSLSPSRTKDPVIALLTPGEYNSAYYEHAFLAQQMGIH 295 EL + + I V H + L LRS++P DPV+ +LTPG YNSAY+EH FLAQQMG+ Sbjct: 198 ELFVQNRIAPVAHYPDLLLDTLRSVAPEGVDDPVVVVLTPGMYNSAYFEHTFLAQQMGVE 257 Query: 296 LVEGRDLVAQDHKVYLKEMNGMXXXXXXXXXXXXXXXXXXAFQPNSLLGVAGLMNAYRAG 355 LVEG+DL D+ V+++ G AF+ +S LGV GL+ AYRAG Sbjct: 258 LVEGKDLFVDDNYVFMRTTQGPKRVDVIYRRVDDDFLDPLAFRNDSALGVPGLLTAYRAG 317 Query: 356 NIAIANAPGTGVADDKAMYVYVPDMIRYYLN 386 +A+ANA GTG+ADDK++Y YVP+MI +YL Sbjct: 318 RVALANAMGTGIADDKSIYPYVPEMIEFYLG 348 >ref|ZP_00118156.1| COG2308: Uncharacterized conserved protein [Cytophaga hutchinsonii] Length = 488 Score = 308 bits (788), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/329 (45%), Positives = 206/329 (62%), Gaps = 1/329 (0%) Query: 57 YDEMYADERSIRPHYKHVNRMFSGMSPEEXXXXXXXXXXXXXXXGITFTLYNPAQDHPME 116 +DE + +R HYKH+ F G+ EE G+TF +Y+ + +E Sbjct: 18 FDEAWLPTGDVRMHYKHLMETFKGLDIEEYLKINELAKGNLFNQGVTFNVYSENAEG-VE 76 Query: 117 RTIPFDMIPRIIPKGEWERLEAGIVQRITALNLFIHDIYHEQFIVKDGIVPRRMIISNCY 176 R PFD+ PR+IP EW+ +E GI QR A+NLF+ DIYHEQ I+KD IVP ++ S+ + Sbjct: 77 RLFPFDLFPRMIPSEEWKTIEVGIKQRNKAINLFLWDIYHEQKILKDKIVPSELLFSSQF 136 Query: 177 FRPEMSGLRVPGGAYVTTSGIDLIRHHDGEYYVLEDNLRTPSGFSYLFKGRSLMNQLFPE 236 ++ EM G+ P G Y+ +G D+I+H+DG+YYVLEDNLR PSG SY+ R M ++F Sbjct: 137 YKKEMIGVDPPAGIYIHITGTDIIKHNDGKYYVLEDNLRCPSGVSYVLSNRETMKKIFFN 196 Query: 237 LSLASSIRDVDHSLNRFLSVLRSLSPSRTKDPVIALLTPGEYNSAYYEHAFLAQQMGIHL 296 L ++ + + LS +RS++P R +P+ +LTPG YNSAY+EH+FLA QMGI L Sbjct: 197 LFSRYHVKPIMQYTEKLLSTIRSVAPDRIDNPLCVILTPGTYNSAYFEHSFLAHQMGIQL 256 Query: 297 VEGRDLVAQDHKVYLKEMNGMXXXXXXXXXXXXXXXXXXAFQPNSLLGVAGLMNAYRAGN 356 VEGRDL + + VY+K + G F P S+LGV GLM+AY+AGN Sbjct: 257 VEGRDLFVEKNFVYMKTIKGPKRVDVIYRRVDDDFIDPLVFNPKSVLGVPGLMSAYQAGN 316 Query: 357 IAIANAPGTGVADDKAMYVYVPDMIRYYL 385 + I NAPGTGVADDKA+Y YVPD+I+YYL Sbjct: 317 VTIINAPGTGVADDKAVYTYVPDIIKYYL 345 >ref|ZP_00030114.1| COG2308: Uncharacterized conserved protein [Burkholderia fungorum] Length = 485 Score = 308 bits (788), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 155/331 (46%), Positives = 206/331 (62%), Gaps = 3/331 (0%) Query: 57 YDEMYADERSIRPHYKHVNRMFSGMSPEEXXXXXXXXXXXXXXXGITFTLYNPAQDHPME 116 YDEM + ++RPHY R E GITF + E Sbjct: 20 YDEMRHHDDAVRPHYARFERWLVKQGNEAIARKRAEADLLFRRVGITFAVNGDLSG--TE 77 Query: 117 RTIPFDMIPRIIPKGEWERLEAGIVQRITALNLFIHDIYHEQFIVKDGIVPRRMIISNCY 176 R IPFD+IPRIIP+ EW+ LEAG+ QR+ ALNLFIHD+YH++ IV+ GIVP + +N Sbjct: 78 RLIPFDLIPRIIPRSEWQTLEAGLRQRVQALNLFIHDVYHDRNIVRAGIVPAEQVYTNAQ 137 Query: 177 FRPEMSGLRVPGGAYVTTSGIDLIRHHD-GEYYVLEDNLRTPSGFSYLFKGRSLMNQLFP 235 +RPEM G+ VP G Y +G+D++R D G++YVLEDNLR PSG SY+ + R +M +LFP Sbjct: 138 YRPEMQGVNVPLGVYAHIAGVDVVRAGDEGKFYVLEDNLRVPSGVSYMLENRKMMMRLFP 197 Query: 236 ELSLASSIRDVDHSLNRFLSVLRSLSPSRTKDPVIALLTPGEYNSAYYEHAFLAQQMGIH 295 EL + + I V H + L LRS++P DPV+ +LTPG YNSAY+EH FLAQQMG+ Sbjct: 198 ELFVQNRIAPVAHYPDLLLDTLRSVAPEGVDDPVVVVLTPGMYNSAYFEHTFLAQQMGVE 257 Query: 296 LVEGRDLVAQDHKVYLKEMNGMXXXXXXXXXXXXXXXXXXAFQPNSLLGVAGLMNAYRAG 355 LVEG+DL D+ V+++ G AF+ +S LGV GL+ AYRAG Sbjct: 258 LVEGKDLFVDDNYVFMRTTQGPKRVDVIYRRVDDDFLDPLAFRNDSALGVPGLLTAYRAG 317 Query: 356 NIAIANAPGTGVADDKAMYVYVPDMIRYYLN 386 +A+ANA GTG+ADDK++Y YVP+MI +YL Sbjct: 318 RVALANAMGTGIADDKSIYPYVPEMIEFYLG 348 >ref|ZP_00018871.1| hypothetical protein [Chloroflexus aurantiacus] Length = 493 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 160/349 (45%), Positives = 215/349 (61%), Gaps = 2/349 (0%) Query: 51 YPLQHFYDEMYADERSIRPHYKHVNRMFSGMSPEEXXXXXXXXXXXXXXXGITFTLYNPA 110 Y L YDEM+ E IRP Y + R+ +SP E GITFT+Y Sbjct: 22 YTLSQAYDEMFTAEGDIRPAYSELARLLCSISPAELQQRQRYADLTFLNQGITFTVY--G 79 Query: 111 QDHPMERTIPFDMIPRIIPKGEWERLEAGIVQRITALNLFIHDIYHEQFIVKDGIVPRRM 170 D +ER P+D++PRII EW+ +E G+ QRI ALNLF+HD+YH + I++DGI+PR + Sbjct: 80 NDAGVERVFPYDLLPRIIAADEWQHIERGLHQRIVALNLFLHDVYHNENILRDGIIPRHL 139 Query: 171 IISNCYFRPEMSGLRVPGGAYVTTSGIDLIRHHDGEYYVLEDNLRTPSGFSYLFKGRSLM 230 + S ++R EM GL VP G Y G DL+R DG++ VLEDNLR PSG SY+ R++M Sbjct: 140 VYSCRHYRREMRGLTVPRGVYTAIVGTDLVRLPDGQFVVLEDNLRVPSGVSYMLTNRAVM 199 Query: 231 NQLFPELSLASSIRDVDHSLNRFLSVLRSLSPSRTKDPVIALLTPGEYNSAYYEHAFLAQ 290 + P L A +R +DH L+ LR+L+P+ +P I LLTPG +NSAY+EH FLA+ Sbjct: 200 KRALPRLFGAYGVRPIDHYGQALLATLRALAPAHRPEPTIVLLTPGVFNSAYFEHTFLAR 259 Query: 291 QMGIHLVEGRDLVAQDHKVYLKEMNGMXXXXXXXXXXXXXXXXXXAFQPNSLLGVAGLMN 350 QMGI LVEGRDL+ ++ VY++ G+ F+P+S+LGV GL N Sbjct: 260 QMGIELVEGRDLLVHNNIVYMRTTKGLQRVDVIYRRIDDDFLDPMIFRPDSVLGVPGLFN 319 Query: 351 AYRAGNIAIANAPGTGVADDKAMYVYVPDMIRYYLNXXXXFWAMSLPIC 399 AYRAG + +ANA GTGVADDKA+Y YVPD+IRYYL ++ +C Sbjct: 320 AYRAGTVVLANAIGTGVADDKAIYAYVPDIIRYYLGEEPILPNVTTYLC 368 >ref|NP_295765.1| conserved hypothetical protein [Deinococcus radiodurans] pir||C75323 conserved hypothetical protein - Deinococcus radiodurans (strain R1) gb|AAF11589.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 655 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 157/335 (46%), Positives = 203/335 (60%), Gaps = 4/335 (1%) Query: 52 PLQHFYDEMYADERSIRPHYKHVNRMFSGMSPEEXXXXXXXXXXXXXXXGITFTLYNPAQ 111 P Q F+DEM+ +RPHY V + + E GITFT+Y+ AQ Sbjct: 7 PGQRFFDEMFTPAGELRPHYAGVRKYMEQLGVSEFSRRTELLDLAFRNQGITFTVYSDAQ 66 Query: 112 DHPMERTIPFDMIPRIIPKGEWERLEAGIVQRITALNLFIHDIYHEQFIVKDGIVPRRMI 171 ERT PFD +PRIIP EW LEAG+ QR+ ALN F++DIYH+ I+ DG++P +I Sbjct: 67 G--TERTFPFDPVPRIIPASEWAHLEAGLTQRVRALNAFLNDIYHDAQILGDGVIPSELI 124 Query: 172 ISNCYFRPEMSGLRVPGGAYVTTSGIDLIRHHDGEYYVLEDNLRTPSGFSYLFKGRSLMN 231 ++ +FR E+ G+ V G Y G DLIR GEY VLEDNLR+PSG SYL R M Sbjct: 125 YTSAHFRREVHGVNVSQGIYTHIVGTDLIRDEKGEYLVLEDNLRSPSGVSYLLSNRDAMR 184 Query: 232 QLFPELSLASSIRDVDHSLNRFLSVLRSLSPSRTKDPVIALLTPGEYNSAYYEHAFLAQQ 291 +++P + +R V H L++L S+SP +D + +LTPG YNSAY+EHA+LAQQ Sbjct: 185 RIYPGMFEGQGVRSVQHYATALLTLLNSMSPR--EDGTVVVLTPGMYNSAYFEHAYLAQQ 242 Query: 292 MGIHLVEGRDLVAQDHKVYLKEMNGMXXXXXXXXXXXXXXXXXXAFQPNSLLGVAGLMNA 351 MG+ LVEGRDL +V+++ G AF+ +S LGVAGL+ Sbjct: 243 MGVQLVEGRDLFVDAGRVWMRTTGGRKQVDVIYRRVDDDFLDPLAFRRDSALGVAGLVEV 302 Query: 352 YRAGNIAIANAPGTGVADDKAMYVYVPDMIRYYLN 386 YR G +AIANA GTGVADDKA+Y YVPDMIRYYLN Sbjct: 303 YRQGRVAIANAIGTGVADDKAVYAYVPDMIRYYLN 337 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 566,958,470 Number of extensions: 22369480 Number of successful extensions: 38786 Number of sequences better than 1.0e-05: 336 Number of HSP's gapped: 38422 Number of HSP's successfully gapped: 336 Length of query: 412 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 284 Effective length of database: 409,704,906 Effective search space: 116356193304 Effective search space used: 116356193304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)