BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0082.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243353.1| chromosome segregation SMC protein [Bacillus ha... 441 e-122 ref|NP_389476.1| chromosome segregation SMC protein homolg [Baci... 422 e-117 ref|NP_833567.1| Chromosome partition protein smc [Bacillus cere... 410 e-113 dbj|BAA10977.1| ORF4 [Bacillus subtilis] 409 e-113 ref|NP_692449.1| chromosome segregation SMC protein [Oceanobacil... 409 e-112 >ref|NP_243353.1| chromosome segregation SMC protein [Bacillus halodurans] pir||G83960 chromosome segregation SMC protein smc [imported] - Bacillus halodurans (strain C-125) dbj|BAB06206.1| chromosome segregation SMC protein [Bacillus halodurans] Length = 1188 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/546 (44%), Positives = 351/546 (64%), Gaps = 2/546 (0%) Query: 1 MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60 MFLKR+E+ GFKSFA++ +EFV+G+TAVVGPNGSGKSNISDGIRWVLGEQSAKSLRG K Sbjct: 1 MFLKRLEIVGFKSFAEQMTVEFVKGVTAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGSK 60 Query: 61 MEDIIFAGSDARKAVNYGEVSLTLDNEDHALPLDFSEVTVTRRVHRSGESEYLINKQACR 120 M+DIIFAGSD RK +N+ E+SL LDNED +P+D+SEV+VTRRV+RSGESEYL+N+Q CR Sbjct: 61 MQDIIFAGSDTRKPLNFAEISLVLDNEDQHIPIDYSEVSVTRRVYRSGESEYLLNRQPCR 120 Query: 121 LKDITELFMDTGIGREAYSIIGQGRIEEILSTRSEDRRGIFEEASGIVKYKSRKRDAARK 180 LKDI +LFMD+G+GREAYSIIGQG++EEILS+++EDRR IFEEA+G++KYK+RK+ A ++ Sbjct: 121 LKDIVDLFMDSGLGREAYSIIGQGKVEEILSSKAEDRRVIFEEAAGVLKYKTRKQQAEKR 180 Query: 181 LDETEQNLLRIHDLISELEDQVGPLKEQSEKAIRYKELREQLKQLEISVYVHQIEGIHTA 240 LD+T++NL R+ D++ ELE QV PLK Q+ A Y E +++L+Q+EI+V V+ I+ IHT Sbjct: 181 LDDTQENLNRVEDILHELEGQVEPLKIQASVAKDYLEKKKELEQVEIAVLVYDIDRIHTE 240 Query: 241 WKEGNDRLEVLRDEQLELSTIVSAHDAKLESGXXXXXXXXXXXXXXXXXXXRYSEANEKS 300 W + + L++L+++ L +S + ++ SE EK Sbjct: 241 WNKAKEALDLLKEQHRALEQQISEKEQSVQGLKQQIAQLDEEAQIAQQQLLSASETLEKR 300 Query: 301 EGYGELLKERRRNLESNREQLLATLGSVGERSEGRQRELAELEHKLQQTRLALEELRTQI 360 EG ++LKER +N NREQLL T+ E+ + LA+ E Q+ + L +I Sbjct: 301 EGRRDVLKERLKNAAENREQLLQTIREGEEKVASLKVHLAKEEEAKQKAYEQMTALEAEI 360 Query: 361 ADEESRLEGVAGGINXXXXXXXXXXXXXXMNLMAQARNEIRYADQQKESLERRMSRSQEE 420 ++E L G + +N A RNE RY ++Q + L+++ R E Sbjct: 361 RNQEKALHGNEKELE-ETVDRLKSDYIELLNEQASLRNETRYLEEQLQQLQQKQERLIRE 419 Query: 421 SGKWTTRLKELTSAQNGLKDKIAGLGKEISSLRNAYITESEQTSKRQKLLEETQSGLRKW 480 + + + KEL + + + + K++ L + Y + + + ++ E+ + L + Sbjct: 420 NEAYFQKRKELEAQEEQERMQFEAKEKQLHRLVDEYRNQQRKVEQVTRVYEQKEKQLYEA 479 Query: 481 EQKREAQVSRHETMKEMQDDFDGFMLGVKEVLKGARKGQLSGVHGAVAELISVPEKLEMA 540 Q + SR + ++EMQ DF GF GVKEVLK AR L G+ GAVAEL++VP+ E A Sbjct: 480 YQLIQRLTSRKDVLEEMQADFSGFFQGVKEVLK-ARHSTLKGIVGAVAELVTVPKPYETA 538 Query: 541 VXXXXG 546 + G Sbjct: 539 IEIALG 544 >ref|NP_389476.1| chromosome segregation SMC protein homolg [Bacillus subtilis] sp|P51834|SMC_BACSU Chromosome partition protein smc pir||G69708 chromosome segregation SMC protein - Bacillus subtilis emb|CAB13467.1| chromosome segregation SMC protein homolg [Bacillus subtilis subsp. subtilis str. 168] Length = 1186 Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust. Identities = 236/550 (42%), Positives = 347/550 (63%), Gaps = 11/550 (2%) Query: 1 MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60 MFLKR+++ GFKSFA++ ++FV+G+TAVVGPNGSGKSNI+D IRWVLGEQSA+SLRGGK Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60 Query: 61 MEDIIFAGSDARKAVNYGEVSLTLDNEDHALPLDFSEVTVTRRVHRSGESEYLINKQACR 120 MEDIIFAGSD+RK +N EV+LTLDN+DH LP+DF EV+VTRRV+RSGESE+LIN Q CR Sbjct: 61 MEDIIFAGSDSRKRLNLAEVTLTLDNDDHFLPIDFHEVSVTRRVYRSGESEFLINNQPCR 120 Query: 121 LKDITELFMDTGIGREAYSIIGQGRIEEILSTRSEDRRGIFEEASGIVKYKSRKRDAARK 180 LKDI +LFMD+G+G+EA+SII QG++EEILS+++EDRR IFEEA+G++KYK+RK+ A K Sbjct: 121 LKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEAAGVLKYKTRKKKAENK 180 Query: 181 LDETEQNLLRIHDLISELEDQVGPLKEQSEKAIRYKELREQLKQLEISVYVHQIEGIHTA 240 L ET+ NL R+ D++ ELE QV PLK Q+ A Y E +++L+ +EI++ + IE +H Sbjct: 181 LFETQDNLNRVEDILHELEGQVEPLKIQASIAKDYLEKKKELEHVEIALTAYDIEKLHGK 240 Query: 241 WKEGNDRLEVLRDEQLELSTIVSAHDAKLESGXXXXXXXXXXXXXXXXXXXRYSEANEKS 300 W +++++ ++E+L S+ +SA +AK+E SE EK Sbjct: 241 WSTLKEKVQMAKEEELAESSAISAKEAKIEDTRDKIQALDESVNELQQVLLVTSEELEKL 300 Query: 301 EGYGELLKERRRNLESNREQLLATLGSVGERSEGRQRELAELEHKLQQTRLALEELRTQI 360 EG E+LKER++N N+EQL + ++ + EL++ E + + +++LR Q+ Sbjct: 301 EGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQV 360 Query: 361 ADEESRL----EGVAGGINXXXXXXXXXXXXXXMNLMAQARNEIRYADQQKESLERRMSR 416 +++ L E V I +N A RNE++ D Q + R Sbjct: 361 KEKQQALSLHNENVEEKIE-----QLKSDYFELLNSQASIRNELQLLDDQMSQSAVTLQR 415 Query: 417 SQEESGKWTTRLKELTSAQNGLKDKIAGLGKEISSLRNAYITESEQTSKRQKLLEETQSG 476 + + K ++++ + + + A + +EI S AY + ++++ E+ +S Sbjct: 416 LADNNEKHLQERHDISARKAACETEFARIEQEIHSQVGAYRDMQTKYEQKKRQYEKNESA 475 Query: 477 LRKWEQKREAQVSRHETMKEMQDDFDGFMLGVKEVLKGARKGQLSGVHGAVAELISVPEK 536 L + Q + S+ + ++ MQ DF GF GVKEVLK K +L G+ GAV ELIS +K Sbjct: 476 LYQAYQYVQQARSKKDMLETMQGDFSGFYQGVKEVLKA--KERLGGIRGAVLELISTEQK 533 Query: 537 LEMAVXXXXG 546 E A+ G Sbjct: 534 YETAIEIALG 543 >ref|NP_833567.1| Chromosome partition protein smc [Bacillus cereus ATCC 14579] gb|AAP10768.1| Chromosome partition protein smc [Bacillus cereus ATCC 14579] Length = 1189 Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/553 (42%), Positives = 348/553 (62%), Gaps = 16/553 (2%) Query: 1 MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60 MFLKR+E+AGFKSFA++ ++FV G+T+VVGPNGSGKSNI+D IRWVLGEQSAKSLRG K Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 MEDIIFAGSDARKAVNYGEVSLTLDNEDHALPLDFSEVTVTRRVHRSGESEYLINKQACR 120 MEDIIFAGSD R+AVN EV++TL+NED LP++++EV VTRRV RSG+S++ INKQ+CR Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 121 LKDITELFMDTGIGREAYSIIGQGRIEEILSTRSEDRRGIFEEASGIVKYKSRKRDAARK 180 LKDI +LFMD+G+GREA+SII QG++EEILS++SE+RRG+FEEA+G++KYK RK+ A K Sbjct: 121 LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEGK 180 Query: 181 LDETEQNLLRIHDLISELEDQVGPLKEQSEKAIRYKELREQLKQLEISVYVHQIEGIHTA 240 L ET++NL R+ D+I EL QV PL+ Q+ A Y E +E+L+++E ++ VH+IE +H Sbjct: 181 LAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHEK 240 Query: 241 WKEGNDRLEVLRDEQLELSTIVSAHDAKLESGXXXXXXXXXXXXXXXXXXXRYSEANEKS 300 W+ ++ ++E+ ++ST + + +LE S+ EK Sbjct: 241 WEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQAVDESVDSLQEVLLLSSKELEKL 300 Query: 301 EGYGELLKERRRNLESNREQLLATLGSVGERSEGRQRELAELEHKLQQTRLALEELRTQI 360 EG ELLKER++N ++ QL + + E+++ E+ L Q ++EL ++ Sbjct: 301 EGQRELLKERKQNATTHCAQLEQLIVELTEKAKSYDGEIESSTEALMQFVNEVKELEQKL 360 Query: 361 ADEESRLEGVAGGINXXXXXXXXXXXXXXMNLMAQARNEIRYADQQKESLERRMSRSQEE 420 D E L A + +N A RNE+ ++Q + + R EE Sbjct: 361 HDNEQLLATFADNLE-EQIENLKGDYIELLNQQASHRNELSMIEEQSKQQTSKNERLDEE 419 Query: 421 SGKWTTRLKELTSAQNGL-------KDKIAGLGKEISSLRNAYITESEQTSKRQKLLEET 473 + K+ E+T+ + L K+K+AG+ L N TE+ K + E Sbjct: 420 NAKYVEMRMEITAKKTKLVESYEQAKEKVAGI------LSNIQKTEA-ALGKCKTQYSEN 472 Query: 474 QSGLRKWEQKREAQVSRHETMKEMQDDFDGFMLGVKEVLKGARKGQLSGVHGAVAELISV 533 ++ L + Q + SR E ++EMQ+D+ GF GV+EVLK AR+ +L G+ GAVAEL++V Sbjct: 473 ETKLYQAYQFVQQARSRKEMLEEMQEDYSGFYQGVREVLK-ARENRLQGIEGAVAELLTV 531 Query: 534 PEKLEMAVXXXXG 546 P++ E+A+ G Sbjct: 532 PKEYEVAMEIALG 544 >dbj|BAA10977.1| ORF4 [Bacillus subtilis] Length = 1188 Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust. Identities = 233/550 (42%), Positives = 337/550 (61%), Gaps = 11/550 (2%) Query: 1 MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60 MFLKR+++ GFKSFA++ ++FV+G+TAVVGPNGSGKSNI+D IRWVLG QSA+SLRGGK Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGGQSARSLRGGK 60 Query: 61 MEDIIFAGSDARKAVNYGEVSLTLDNEDHALPLDFSEVTVTRRVHRSGESEYLINKQACR 120 MEDIIFAGSD+RK +N EV+LTLDN+DH LP+DF EV+VTRRV+RSGESE+LIN Q CR Sbjct: 61 MEDIIFAGSDSRKRLNLAEVTLTLDNDDHFLPIDFHEVSVTRRVYRSGESEFLINNQPCR 120 Query: 121 LKDITELFMDTGIGREAYSIIGQGRIEEILSTRSEDRRGIFEEASGIVKYKSRKRDAARK 180 LKDI +LFMD+G+G+EA+SII QG++EEILS+++EDRR IF EA+G++KYK+RK A K Sbjct: 121 LKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFGEAAGVLKYKTRKEKAGNK 180 Query: 181 LDETEQNLLRIHDLISELEDQVGPLKEQSEKAIRYKELREQLKQLEISVYVHQIEGIHTA 240 L ET+ NL R+ D++ ELE QV PLK Q+ A Y E +++L+ +EI + + IE +H Sbjct: 181 LFETQDNLNRVGDILHELEGQVEPLKIQASIAKDYLEKKKELEHVEIPLTAYDIEELHGK 240 Query: 241 WKEGNDRLEVLRDEQLELSTIVSAHDAKLESGXXXXXXXXXXXXXXXXXXXRYSEANEKS 300 W +++++ ++E+L S+ +S +AK+E SE EK Sbjct: 241 WSTLKEKVQMAKEEELAESSAISPKEAKIEGTRDKIQALDESVDELQQVLLVTSEELEKL 300 Query: 301 EGYGELLKERRRNLESNREQLLATLGSVGERSEGRQRELAELEHKLQQTRLALEELRTQI 360 EG E+LK+R++N N+EQL + ++ R E E + + +++LR Q+ Sbjct: 301 EGRKEVLKDRKKNAVQNQEQLEEAIVQFQQKETVLTRRAFEAEAVFETLQAEVKQLRAQV 360 Query: 361 ADEESRL----EGVAGGINXXXXXXXXXXXXXXMNLMAQARNEIRYADQQKESLERRMSR 416 +++ L E V I +N A RNE++ D Q + R Sbjct: 361 KEKQHALSLHNENVEEKIE-----QLKSDYFELLNSQASIRNELQLLDDQMSQSAVTLQR 415 Query: 417 SQEESGKWTTRLKELTSAQNGLKDKIAGLGKEISSLRNAYITESEQTSKRQKLLEETQSG 476 + + K ++++ + K + A +EI S AY + ++++ E+ +S Sbjct: 416 LADNNEKHLQERHDISARKAACKTEFARFEQEIHSQVGAYRDMQTKYEQKKRQYEKNESP 475 Query: 477 LRKWEQKREAQVSRHETMKEMQDDFDGFMLGVKEVLKGARKGQLSGVHGAVAELISVPEK 536 L + Q + S+ + + MQ DF GF GVKEVLK K +L G+ GAV ELIS +K Sbjct: 476 LYQAYQYVQQARSKKDMLDTMQGDFSGFYQGVKEVLKA--KDRLGGIRGAVLELISTEQK 533 Query: 537 LEMAVXXXXG 546 E A+ G Sbjct: 534 YETAIEIAVG 543 >ref|NP_692449.1| chromosome segregation SMC protein [Oceanobacillus iheyensis HTE831] dbj|BAC13484.1| chromosome segregation SMC protein [Oceanobacillus iheyensis HTE831] Length = 1188 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 229/553 (41%), Positives = 338/553 (61%), Gaps = 15/553 (2%) Query: 1 MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60 M+LKR+E GFKSFA++ ++FV G+TAVVGPNGSGKSNI+D IRWVLGEQSAKSLRG K Sbjct: 1 MYLKRLESKGFKSFAERIGVDFVSGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGSK 60 Query: 61 MEDIIFAGSDARKAVNYGEVSLTLDNEDHALPLDFSEVTVTRRVHRSGESEYLINKQACR 120 MEDIIF GS+ RKA+N EV+L LDN+D +PLD+ EV+VTRRV+RSGESE+ INKQ CR Sbjct: 61 MEDIIFQGSETRKALNVAEVTLVLDNQDQRVPLDYEEVSVTRRVYRSGESEFYINKQPCR 120 Query: 121 LKDITELFMDTGIGREAYSIIGQGRIEEILSTRSEDRRGIFEEASGIVKYKSRKRDAARK 180 LKDI +LFMD+G+GREA+SII QG++EEILS+++E+RR IFEEA+G++KYK RK+ A K Sbjct: 121 LKDIIDLFMDSGLGREAFSIISQGKVEEILSSKAEERRTIFEEAAGVLKYKQRKKKAEYK 180 Query: 181 LDETEQNLLRIHDLISELEDQVGPLKEQSEKAIRYKELREQLKQLEISVYVHQIEGIHTA 240 L ET++NL R+ D+I E+E Q+ PLKEQ+E+A RY++L QL+ E+++ + +IE IH Sbjct: 181 LAETQENLNRVEDIIYEIEQQIDPLKEQAERANRYQQLHGQLRDTEVALLITEIERIHKE 240 Query: 241 WKEGNDRLEVLRDEQLELSTIVSAHDAKLESGXXXXXXXXXXXXXXXXXXXRYSEANEKS 300 W+ LEV +D Q + V + + +L + +E EK Sbjct: 241 WQVVLQDLEVEKDNQAKQQQQVKSVENRLFEQKQVSSTIDESLEKLQSTLLQATEQLEKY 300 Query: 301 EGYGELLKERRRNLESNREQLLATLGSVGERSE-------GRQRELAELEHKLQQTRLAL 353 EG +LL ER ++L NRE+L+ L + ++ E Q LA+++ +QT+ + Sbjct: 301 EGRKQLLDERSKHLGENREKLIQQLQEIDQQIEVLANDLKTEQSNLADIQQSKKQTKDKV 360 Query: 354 EELRTQIADEESRLEGVAGGINXXXXXXXXXXXXXXMNLMAQARNEIRYADQQKESLERR 413 E LR +++ + E +A I +N A RNE++ QQ E ++++ Sbjct: 361 EILREKLSTSQ---EKIADQI-----EDLKSEYIDLLNQQAAKRNELQSVTQQTEQIDQK 412 Query: 414 MSRSQEESGKWTTRLKELTSAQNGLKDKIAGLGKEISSLRNAYITESEQTSKRQKLLEET 473 + T+ ++ S + + + + E+ + N + + + E+ Sbjct: 413 SEHQSSKFKDLVTKREQFQSEKEDAEKTLNAIDAELKAKENELMNVKVELQSERGNFEDA 472 Query: 474 QSGLRKWEQKREAQVSRHETMKEMQDDFDGFMLGVKEVLKGARKGQLSGVHGAVAELISV 533 QS L + Q E S+ E ++EM++D+ GF GVK +LK +L G+ GAV EL+ V Sbjct: 473 QSKLYQGYQYIEKLKSKKEMLEEMKEDYQGFFHGVKSILKAREDKKLQGIEGAVIELMEV 532 Query: 534 PEKLEMAVXXXXG 546 P++ A+ G Sbjct: 533 PKEYVTAMETVLG 545 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.130 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 688,409,797 Number of extensions: 26704483 Number of successful extensions: 131917 Number of sequences better than 1.0e-05: 839 Number of HSP's gapped: 131351 Number of HSP's successfully gapped: 846 Length of query: 555 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 424 Effective length of database: 401,559,609 Effective search space: 170261274216 Effective search space used: 170261274216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)