BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0072.p (179 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833573.1| PaaI family protein, possible transcriptional r... 191 6e-48 ref|NP_846234.1| conserved hypothetical protein [Bacillus anthra... 191 6e-48 ref|NP_657823.1| DUF157, Uncharacterized protein PaaI, COG2050 [... 190 1e-47 ref|NP_243360.1| BH2494~unknown conserved protein [Bacillus halo... 188 4e-47 ref|NP_389470.1| ylpC [Bacillus subtilis] >gi|34098377|sp|O34835... 187 1e-46 >ref|NP_833573.1| PaaI family protein, possible transcriptional regulator [Bacillus cereus ATCC 14579] sp|Q819V3|FAPR_BACCR Transcription factor fapR (Fatty acid and phospholipid biosynthesis regulator) gb|AAP10774.1| PaaI family protein, possible transcriptional regulator [Bacillus cereus ATCC 14579] Length = 197 Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 90/159 (56%), Positives = 125/159 (78%), Gaps = 1/159 (0%) Query: 2 SKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSYD 61 SKKERQ+ L Q I+ NPF+TD +L + +VSIQT+RLDRMEL IPELRER+K +A ++ Sbjct: 6 SKKERQELLQQTIESNPFITDEDLAEKFQVSIQTVRLDRMELSIPELRERIKHVATKQHE 65 Query: 62 Q-VRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 + V+SLP +EVVG+I+D++LDR ISIFE++ +HVF RN IARGH++FAQANSLAVA+I+ Sbjct: 66 EDVKSLPLEEVVGEIIDIELDRHAISIFEVKIEHVFKRNQIARGHHLFAQANSLAVAVID 125 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKA 159 +E+ALTA + +R V+LGE+ +AKA+V + G+ Sbjct: 126 EELALTAKSTIRYIRPVKLGERVVAKARVEDVENDKGRT 164 >ref|NP_846234.1| conserved hypothetical protein [Bacillus anthracis str. Ames] ref|NP_980193.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] sp|Q81WI4|FAPR_BACAA Transcription factor fapR (Fatty acid and phospholipid biosynthesis regulator) gb|AAP27720.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAS42801.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 197 Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 90/159 (56%), Positives = 125/159 (78%), Gaps = 1/159 (0%) Query: 2 SKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSYD 61 SKKERQ+ L Q I+ NPF+TD +L + +VSIQT+RLDRMEL IPELRER+K +A ++ Sbjct: 6 SKKERQELLQQTIETNPFITDEDLAEKFQVSIQTVRLDRMELSIPELRERIKHVATKQHE 65 Query: 62 Q-VRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 + V+SLP +EVVG+I+D++LDR ISIFE++ +HVF RN IARGH++FAQANSLAVA+I+ Sbjct: 66 EDVKSLPLEEVVGEIIDIELDRHAISIFEVKVEHVFKRNQIARGHHLFAQANSLAVAVID 125 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKA 159 +E+ALTA + +R V+LGE+ +AKA+V + G+ Sbjct: 126 EELALTAKSTIRYIRPVKLGERVVAKARVEDVENDKGRT 164 >ref|NP_657823.1| DUF157, Uncharacterized protein PaaI, COG2050 [Bacillus anthracis A2012] Length = 220 Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/161 (56%), Positives = 126/161 (78%), Gaps = 1/161 (0%) Query: 2 SKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSYD 61 SKKERQ+ L Q I+ NPF+TD +L + +VSIQT+RLDRMEL IPELRER+K +A ++ Sbjct: 29 SKKERQELLQQTIETNPFITDEDLAEKFQVSIQTVRLDRMELSIPELRERIKHVATKQHE 88 Query: 62 Q-VRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 + V+SLP +EVVG+I+D++LDR ISIFE++ +HVF RN IARGH++FAQANSLAVA+I+ Sbjct: 89 EDVKSLPLEEVVGEIIDIELDRHAISIFEVKVEHVFKRNQIARGHHLFAQANSLAVAVID 148 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKAEV 161 +E+ALTA + +R V+LGE+ +AKA+V + G+ V Sbjct: 149 EELALTAKSTIRYIRPVKLGERVVAKARVEDVENDKGRTVV 189 >ref|NP_243360.1| BH2494~unknown conserved protein [Bacillus halodurans] sp|Q9KA00|FAPR_BACHD Transcription factor fapR (Fatty acid and phospholipid biosynthesis regulator) pir||F83961 hypothetical protein BH2494 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06213.1| BH2494~unknown conserved protein [Bacillus halodurans] Length = 186 Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/150 (59%), Positives = 118/150 (78%) Query: 3 KKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSYDQ 62 K++RQ+ L + ID NPF+TD L + VSIQTIRLDRMEL IPELRER+K +A+ D+ Sbjct: 5 KQDRQRHLKETIDANPFITDEALADRFGVSIQTIRLDRMELSIPELRERIKDVAQKQLDE 64 Query: 63 VRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIINDE 122 V++LP +EV G+IVDLQLD ISI +++++HVFSR GIARGHY+FAQANSLAVAII+D+ Sbjct: 65 VKALPMEEVFGEIVDLQLDERAISILDVKKEHVFSRTGIARGHYLFAQANSLAVAIIDDD 124 Query: 123 IALTASAXXXXVRMVRLGEKCIAKAQVRSL 152 +ALTA A R V+ GE+ +AKA+V+ + Sbjct: 125 LALTAKATIRFTRQVKAGERVVAKAEVQKV 154 >ref|NP_389470.1| ylpC [Bacillus subtilis] sp|O34835|FAPR_BACSU Transcription factor fapR (Fatty acid and phospholipid biosynthesis regulator) pir||A69880 hypothetical protein ylpC - Bacillus subtilis emb|CAA74247.1| YlpC protein [Bacillus subtilis] emb|CAB13461.1| ylpC [Bacillus subtilis subsp. subtilis str. 168] Length = 188 Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/161 (57%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 2 SKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSY- 60 +K+ERQ+ L Q I PF+TD EL + VSIQTIRLDR+EL IPELRER+K +AE + Sbjct: 4 NKRERQELLQQTIQATPFITDEELAGKFGVSIQTIRLDRLELSIPELRERIKNVAEKTLE 63 Query: 61 DQVRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 D+V+SL DEV+G+I+DL+LD ISI EI+++HVFSRN IARGH++FAQANSLAVA+I+ Sbjct: 64 DEVKSLSLDEVIGEIIDLELDDQAISILEIKQEHVFSRNQIARGHHLFAQANSLAVAVID 123 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKAEV 161 DE+ALTASA R V+ GE+ +AKA+V ++ G+ V Sbjct: 124 DELALTASADIRFTRQVKQGERVVAKAKVTAVEKEKGRTVV 164 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 209,240,747 Number of extensions: 7066090 Number of successful extensions: 17188 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 17180 Number of HSP's successfully gapped: 16 Length of query: 179 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 61 Effective length of database: 436,855,896 Effective search space: 26648209656 Effective search space used: 26648209656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)