BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0068.p (117 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243452.1| BH2586~unknown conserved protein [Bacillus halo... 121 4e-27 ref|NP_833645.1| ATP-dependent protease La [Bacillus cereus ATCC... 117 6e-26 ref|NP_692374.1| hypothetical protein OB1453 [Oceanobacillus ihe... 115 2e-25 ref|NP_980267.1| PDZ domain protein [Bacillus cereus ATCC 10987]... 115 3e-25 ref|NP_846375.1| PDZ domain protein [Bacillus anthracis str. Ame... 115 3e-25 >ref|NP_243452.1| BH2586~unknown conserved protein [Bacillus halodurans] pir||B83973 hypothetical protein BH2586 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06305.1| BH2586~unknown conserved protein [Bacillus halodurans] Length = 349 Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/114 (52%), Positives = 81/114 (71%), Gaps = 6/114 (5%) Query: 6 VSFVDTDVGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVA 65 V+ +++GGPSAGLMF++EI NQL DLTKG+ +AGTG+I +G VG IGGVK KIVA Sbjct: 232 VTIDSSEIGGPSAGLMFSLEIYNQLQEEDLTKGYHIAGTGSINEEGEVGRIGGVKQKIVA 291 Query: 66 ADRKGAEIFFVPVK------NYEEAKAKADQIGTDMKLIPVSTLAEALKYMQEL 113 A + GA+ F P + NY+EA A+ IGT+MK+IP+ T EAL+++Q L Sbjct: 292 AHKAGADYFLAPNEHGAEQSNYKEALEAAEDIGTEMKIIPIDTFEEALQFLQSL 345 >ref|NP_833645.1| ATP-dependent protease La [Bacillus cereus ATCC 14579] gb|AAP10846.1| ATP-dependent protease La [Bacillus cereus ATCC 14579] Length = 345 Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 59/114 (51%), Positives = 76/114 (66%), Gaps = 6/114 (5%) Query: 6 VSFVDTDVGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVA 65 V ++GGPSAGLMFT+EI NQL DLTKGH +AGTGTI G VG IGG+ K+VA Sbjct: 224 VKINSNEIGGPSAGLMFTLEIYNQLVEEDLTKGHEIAGTGTINEKGEVGPIGGINQKVVA 283 Query: 66 ADRKGAEIFFVPVK------NYEEAKAKADQIGTDMKLIPVSTLAEALKYMQEL 113 A GAE+FF P + NY++A A I T MK++PV TL +AL Y++++ Sbjct: 284 ASDAGAEVFFAPNEKGAEKSNYKDALETAKDIKTKMKIVPVDTLDDALTYLEKM 337 >ref|NP_692374.1| hypothetical protein OB1453 [Oceanobacillus iheyensis HTE831] dbj|BAC13409.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 338 Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 85/114 (74%), Gaps = 6/114 (5%) Query: 6 VSFVDTDVGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVA 65 ++F ++GGPSAGLMF++EI +QLT D+TKG ++ GTG ++ DGN+ IGG+ K+VA Sbjct: 224 INFSSGNIGGPSAGLMFSLEIYDQLTEEDITKGKQIGGTGEVDYDGNIYRIGGIDKKVVA 283 Query: 66 ADRKGAEIFFVPVK------NYEEAKAKADQIGTDMKLIPVSTLAEALKYMQEL 113 +D++G ++FF P + NY+ A A++IG+DM+++PV+T +AL+Y++++ Sbjct: 284 SDKEGVDVFFAPNENGSEESNYQVAVKTAEEIGSDMEIVPVNTFEDALEYLEKM 337 >ref|NP_980267.1| PDZ domain protein [Bacillus cereus ATCC 10987] gb|AAS42875.1| PDZ domain protein [Bacillus cereus ATCC 10987] Length = 340 Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 6/108 (5%) Query: 12 DVGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVAADRKGA 71 ++GGPSAGLMFT+EI NQL DLT+GH +AGTGTI G +G IGG++ K+VAA GA Sbjct: 230 EIGGPSAGLMFTLEIYNQLVDEDLTRGHEIAGTGTINEKGEIGPIGGIQQKVVAASDAGA 289 Query: 72 EIFFVPVK------NYEEAKAKADQIGTDMKLIPVSTLAEALKYMQEL 113 E+FF P + NY++A A I T MK++PV TL +AL Y++++ Sbjct: 290 EVFFAPNEKGAEKSNYKDALEAAKDIKTKMKVVPVDTLDDALMYLEKM 337 >ref|NP_846375.1| PDZ domain protein [Bacillus anthracis str. Ames] gb|AAP27861.1| PDZ domain protein [Bacillus anthracis str. Ames] Length = 340 Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 6/108 (5%) Query: 12 DVGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVAADRKGA 71 ++GGPSAGLMFT+EI NQL DLT+GH +AGTGTI G +G IGG++ K+VAA GA Sbjct: 230 EIGGPSAGLMFTLEIYNQLVDEDLTRGHEIAGTGTINEKGEIGPIGGIQQKVVAASDAGA 289 Query: 72 EIFFVPVK------NYEEAKAKADQIGTDMKLIPVSTLAEALKYMQEL 113 E+FF P + NY++A A I T MK++PV TL +AL Y++++ Sbjct: 290 EVFFAPNEKGAEKSNYKDALEAAKDIKTKMKVVPVDTLDDALMYLEKM 337 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 167,705,839 Number of extensions: 6418599 Number of successful extensions: 13151 Number of sequences better than 1.0e-05: 296 Number of HSP's gapped: 13093 Number of HSP's successfully gapped: 296 Length of query: 117 Length of database: 757,237,578 Length adjustment: 82 Effective length of query: 35 Effective length of database: 534,599,460 Effective search space: 18710981100 Effective search space used: 18710981100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 120 (50.8 bits)