BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0057.p
         (182 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA90649.1| CwlV [Paenibacillus polymyxa]                          57   2e-07

>dbj|BAA90649.1| CwlV [Paenibacillus polymyxa]
          Length = 499

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 18  VWPAPAV-HGAEPKVIFSVNNEVLQFPANEVPLITGNVLMVPIRKVGKALGLEVVYIQKE 76
           +W  P   H A       ++++ L  P+     + G   MVP+R + + LG +V + Q+ 
Sbjct: 14  MWAVPGYGHAASSGTQIYLDDQQLSVPSGAKAQVIGGSTMVPLRVISENLGYDVTWKQQA 73

Query: 77  KKLELSRNGQQLDIKLGTNEAVINGKDKLAINGKVILRGNLVYVPFSLF-NAMGLISSYD 135
           + + + ++   + + +G+  A +NG D ++++   +LR N   VP       MGL   +D
Sbjct: 74  RTITIEKDSTSIRMIIGSKTATVNGSD-ISLDASPLLRSNYALVPLRFIGEQMGLDVKWD 132

Query: 136 SAA 138
           S++
Sbjct: 133 SSS 135


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 236,464,371
Number of extensions: 9124328
Number of successful extensions: 17036
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 17037
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 64
Effective length of database: 436,855,896
Effective search space: 27958777344
Effective search space used: 27958777344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 122 (51.6 bits)