BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0049.p (124 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831137.1| Transcriptional regulator, GntR family [Bacillu... 157 7e-38 ref|NP_843831.1| transcriptional regulator, GntR family [Bacillu... 157 7e-38 ref|NP_977793.1| transcriptional regulator, GntR family [Bacillu... 156 1e-37 ref|NP_655258.1| HTH_GNTR, helix_turn_helix gluconate operon tra... 155 3e-37 ref|NP_346906.1| Transcriptional regulator, GntR family [Clostri... 116 2e-25 >ref|NP_831137.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579] gb|AAP08338.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579] Length = 126 Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 74/121 (61%), Positives = 93/121 (76%) Query: 1 MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60 M IEF N PIY+Q+M Y+K EIVTG L PGDKIPSVRELA+ELQ+NPNT+QRTFQELER Sbjct: 1 MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELER 60 Query: 61 ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIET 120 + +V TRRGMGRYVT + I+ ++KEMA+++L FI GM LGF EEIL + ++ Sbjct: 61 DGVVVTRRGMGRYVTNEGEKIMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHD 120 Query: 121 R 121 + Sbjct: 121 K 121 >ref|NP_843831.1| transcriptional regulator, GntR family [Bacillus anthracis str. Ames] gb|AAP25317.1| transcriptional regulator, GntR family [Bacillus anthracis str. Ames] Length = 126 Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 74/121 (61%), Positives = 93/121 (76%) Query: 1 MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60 M IEF N PIY+Q+M Y+K EIVTG L PGDKIPSVRELA+ELQ+NPNT+QRTFQELER Sbjct: 1 MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELER 60 Query: 61 ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIET 120 + +V TRRGMGRYVT + I+ ++KEMA+++L FI GM LGF EEIL + ++ Sbjct: 61 DGVVVTRRGMGRYVTNEGEKIMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHE 120 Query: 121 R 121 + Sbjct: 121 K 121 >ref|NP_977793.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987] gb|AAS40401.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987] Length = 126 Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 74/121 (61%), Positives = 93/121 (76%) Query: 1 MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60 M IEF N PIY+Q+M Y+K EIVTG L PGDKIPSVRELA+ELQ+NPNT+QRTFQELER Sbjct: 1 MKIEFSPNIPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELER 60 Query: 61 ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIET 120 + +V TRRGMGRYVT + I+ ++KEMA+++L FI GM LGF EEIL + ++ Sbjct: 61 DGVVVTRRGMGRYVTNEGEKIMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHE 120 Query: 121 R 121 + Sbjct: 121 K 121 >ref|NP_655258.1| HTH_GNTR, helix_turn_helix gluconate operon transcriptional repressor [Bacillus anthracis A2012] Length = 126 Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 73/121 (60%), Positives = 92/121 (76%) Query: 1 MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60 M IEF N PIY+Q+M Y+K EIVTG L PGDKIPSVRELA+ELQ+NPNT+QRTFQELER Sbjct: 1 MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELER 60 Query: 61 ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIET 120 + + TRRGMGRYVT + I+ ++KEMA+++L FI GM LGF EEIL + ++ Sbjct: 61 DGVXVTRRGMGRYVTNEGEKIMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHE 120 Query: 121 R 121 + Sbjct: 121 K 121 >ref|NP_346906.1| Transcriptional regulator, GntR family [Clostridium acetobutylicum] pir||C96932 transcription regulator, GntR family [imported] - Clostridium acetobutylicum gb|AAK78246.1| Transcriptional regulator, GntR family [Clostridium acetobutylicum] Length = 121 Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 58/121 (47%), Positives = 87/121 (71%) Query: 3 IEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELERET 62 ++FDN PIY+QIM+ +K +I+ G LKPGDK+PSVRE+A + ++NPNT+QR +QELERE Sbjct: 1 MKFDNKAPIYIQIMDKIKIDIINGTLKPGDKLPSVREMAVKFKVNPNTLQRVYQELEREN 60 Query: 63 IVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIETRT 122 I T+RG G +V + I+ +KKEMA +V++ FI ++E GF +++IL V + + Sbjct: 61 ITYTQRGTGSFVREDSDMIINLKKEMASEVIENFIENIKEFGFGNKDILKIVEDKLNEEE 120 Query: 123 K 123 K Sbjct: 121 K 121 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 166,860,177 Number of extensions: 6089367 Number of successful extensions: 21934 Number of sequences better than 1.0e-05: 207 Number of HSP's gapped: 21964 Number of HSP's successfully gapped: 207 Length of query: 124 Length of database: 757,237,578 Length adjustment: 88 Effective length of query: 36 Effective length of database: 518,308,866 Effective search space: 18659119176 Effective search space used: 18659119176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)