BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0048.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388790.1| yhcI [Bacillus subtilis] >gi|1724003|sp|P54593|... 95 1e-18 ref|NP_692636.1| hypothetical protein OB1715 [Oceanobacillus ihe... 80 4e-14 ref|NP_833393.1| Bacitracin transport permease protein BCRB [Bac... 71 2e-11 ref|NP_979996.1| membrane protein, putative [Bacillus cereus ATC... 70 4e-11 ref|NP_655262.1| hypothetical protein predicted by GeneMark [Bac... 69 9e-11 >ref|NP_388790.1| yhcI [Bacillus subtilis] sp|P54593|YHCI_BACSU Hypothetical protein yhcI pir||E69822 hypothetical protein yhcI - Bacillus subtilis emb|CAA65692.1| hypothetical protein [Bacillus subtilis] emb|CAB12737.1| yhcI [Bacillus subtilis subsp. subtilis str. 168] Length = 313 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 21/201 (10%) Query: 62 ILVIIGTAGIVAKEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXXXXXG 121 + II AGIVA E++ GTIK L+IR SR IL SK++TVL+ G Sbjct: 112 LFTIIIAAGIVANEFNWGTIKLLMIRPLSRFQILMSKYITVLLFGLLLLLILFIGSTLLG 171 Query: 122 MLWFXXXXXXXXXXDIL----------------TSVLYNSVYMVMFATLAFMMGILTTST 165 +++F ++ T+ L SV +M AT+AFM+ + ++ Sbjct: 172 LIFFGTGGETAANIHLIYKDGHVIEQNMMGHLATTYLSESVSALMVATMAFMLSAVFRNS 231 Query: 166 GVSIGVSMFALMI----SNLVIFK-DFYKYVLFPNLNLAAYEGGGAPLPGMTLGFSILML 220 +++G S+F L+ + + K D+ KY+LF N++L Y G + GMT+ FS++ML Sbjct: 232 SLAVGFSIFLLVAGTTATAFIAAKFDWAKYILFANVDLTQYVDGTPLIKGMTMTFSLVML 291 Query: 221 AVYFLLFLVTGFMVFRRRDVA 241 A+YF++FL+ F +F +RD+A Sbjct: 292 AIYFIIFLLLAFGIFMKRDIA 312 >ref|NP_692636.1| hypothetical protein OB1715 [Oceanobacillus iheyensis HTE831] dbj|BAC13671.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 288 Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 19/187 (10%) Query: 74 KEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXXXXXGMLWF-------- 125 E+ GTIK LLIR +R IL SK+V+V + G++ F Sbjct: 100 NEFKWGTIKLLLIRPSTRAKILLSKYVSVFLFAITIMAFMIISSFIIGLILFGINGANPA 159 Query: 126 ------XXXXXXXXXXDILTSVLYNSVYMVMFATLAFMMGILTTSTGVSIGVSMFALMIS 179 I ++ S ++ TLAF + L S+ ++IG+S+F L+ + Sbjct: 160 LIVESGMSFTETTYLSQIQKEMVLGSASFILITTLAFTISTLFRSSAMAIGISIFLLLSN 219 Query: 180 NLVIF----KDFYKYVLFPNLNLAAYEGGGAP-LPGMTLGFSILMLAVYFLLFLVTGFMV 234 ++ F D+ KY+LF N++L Y G P + GMTLGFSI ML +Y+++F+ + Sbjct: 220 QMIAFFLSQYDWAKYILFLNMDLDQYTANGTPYIEGMTLGFSITMLIIYYIIFIAISWFS 279 Query: 235 FRRRDVA 241 F +RDVA Sbjct: 280 FTKRDVA 286 >ref|NP_833393.1| Bacitracin transport permease protein BCRB [Bacillus cereus ATCC 14579] gb|AAP10594.1| Bacitracin transport permease protein BCRB [Bacillus cereus ATCC 14579] Length = 314 Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 18/200 (9%) Query: 59 ILSILVIIGTAGIVAKEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXXX 118 IL +++ + I A EYS GT KFL IR SR IL +KF+ +++ Sbjct: 114 ILLPFILVYASTIFANEYSWGTYKFLTIRPASRFKILTAKFLAIVIFAALLFIFNMIFSA 173 Query: 119 XXGML--------W----FXXXXXXXXXXDILTSVLYNSVYM--VMFATLAFMMGILTTS 164 G++ W F + S Y ++ V++A+ AFM+ +LT S Sbjct: 174 LCGLVIYKFQQPAWSEFIFQDGNIIKQNIFVEASKYYVLSWLPTVVYASFAFMISVLTRS 233 Query: 165 TGVSIGVSMFALMISNLVIFK----DFYKYVLFPNLNLAAYEGGGAPLPGMTLGFSILML 220 +G +IG+S+F + N+ + ++ KY+L N +L + G+ + G+T F+ ML Sbjct: 234 SGGAIGISLFLALSGNIALLAATRYNWAKYLLPANTDLYSISKNGSFIDGVTFPFASCML 293 Query: 221 AVYFLLFLVTGFMVFRRRDV 240 +Y +FL + VF +RD+ Sbjct: 294 LLYLFVFLCISYTVFLKRDL 313 >ref|NP_979996.1| membrane protein, putative [Bacillus cereus ATCC 10987] gb|AAS42604.1| membrane protein, putative [Bacillus cereus ATCC 10987] Length = 314 Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 18/200 (9%) Query: 59 ILSILVIIGTAGIVAKEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXXX 118 IL +++ + I A EYS GT KFL IR SR IL +KF+ +++ Sbjct: 114 ILLPFILVYASTIFANEYSWGTYKFLTIRPASRFKILTAKFLAIVIFAALLFIFNMIFSI 173 Query: 119 XXGML--------W--FXXXXXXXXXXDILTSV----LYNSVYMVMFATLAFMMGILTTS 164 G++ W F +I + + + +++A AFM+ +LT S Sbjct: 174 LCGLVIYKFQQPAWSEFIFQDGNIIKQNIFVEASKYYILSWLPTIVYAAFAFMISVLTRS 233 Query: 165 TGVSIGVSMFALMISNLVIFK----DFYKYVLFPNLNLAAYEGGGAPLPGMTLGFSILML 220 +G +IG+S+F + N+ + D+ KY+L N +L + G+ + G+T F+ ML Sbjct: 234 SGGAIGISLFLALSGNIALLAATRYDWAKYLLPANTDLYSIAKNGSFIDGVTFPFASCML 293 Query: 221 AVYFLLFLVTGFMVFRRRDV 240 +Y +FL + VF +RD+ Sbjct: 294 LLYLFVFLGVSYTVFLKRDL 313 >ref|NP_655262.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_843835.1| ABC transporter, permease protein, putative [Bacillus anthracis str. Ames] gb|AAP25321.1| ABC transporter, permease protein, putative [Bacillus anthracis str. Ames] Length = 258 Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 23/256 (8%) Query: 3 NEWLKLSKKSTFFIAYGLMIVMPLVIGYVVHSVAGDMFSSGPQFAAEML--LPSGIGQIL 60 NE+LKL K +I G++ V+ ++G + GD G +F L S IG I Sbjct: 7 NEFLKLHAKKGMYILIGVIAVLE-ILGVLAMMKWGD----GTEFKGSYLDFASSEIGLIT 61 Query: 61 SILVIIG---TAGIVAKEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXX 117 I G + ++ E+ +GTIK LLIR R R +L SK++TVL+ Sbjct: 62 LFATIFGITIASRMITDEFQKGTIKQLLIRPRKRMTVLFSKYITVLLTIIFIIFASTLIA 121 Query: 118 XXXGMLWFXXXXXXXXXXDILTSVLYNSVYMVMFATLAFMMGILTTSTGVSIGVSMFALM 177 G + ++ S LY + + FATLAF + + + + + ++MF Sbjct: 122 MIIGGIVMDGSKTELTIGIVMKSTLYQVLSPLFFATLAFFLANVFRKSVLPLIITMFLFF 181 Query: 178 IS---NLVIF---KDFYKYVLFPNLNLAAYEGG----GAPLP---GMTLGFSILMLAVYF 224 + N+V+ K K+++F +L+L AY+G G P T S+L++ Y Sbjct: 182 LQGAINMVLMMFAKGVAKFIVFFHLDLRAYDGNKLISGGVEPTFTEFTFTTSLLLVITYI 241 Query: 225 LLFLVTGFMVFRRRDV 240 ++ L+ +F++RDV Sbjct: 242 VVLLIASSALFQKRDV 257 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.144 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 277,211,687 Number of extensions: 9675008 Number of successful extensions: 38934 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 38912 Number of HSP's successfully gapped: 20 Length of query: 241 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 119 Effective length of database: 425,995,500 Effective search space: 50693464500 Effective search space used: 50693464500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 124 (52.4 bits)