BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0041.p (197 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388411.1| similar to NAD(P)H oxidoreductase [Bacillus sub... 182 3e-45 gb|AAL66420.1| nitroreductase [Bacillus amyloliquefaciens] 180 2e-44 ref|NP_390524.1| similar to NAD(P)H oxidoreductase [Bacillus sub... 179 5e-44 ref|NP_391480.1| similar to NAD(P)H oxidoreductase [Bacillus sub... 174 1e-42 ref|NP_979737.1| unnamed protein product [Bacillus cereus ATCC 1... 165 5e-40 >ref|NP_388411.1| similar to NAD(P)H oxidoreductase [Bacillus subtilis] sp|P96674|YDEQ_BACSU Putative NAD(P)H oxidoreductase ydeQ pir||C69779 NAD(P)H oxidoreductase homolog ydeQ - Bacillus subtilis dbj|BAA19364.1| PROBABLE NAD(P)H OXIDOREDUCTASE. [Bacillus subtilis] emb|CAB12337.1| ydeQ [Bacillus subtilis subsp. subtilis str. 168] Length = 197 Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 92/189 (48%), Positives = 121/189 (64%), Gaps = 1/189 (0%) Query: 1 MSILIVAAHPRIEHSRVNKRWLSELRGYPDQVTVHELYKAYPHFTIHAENEQDLVARYDR 60 M L++ HP IE SR+NK+W + PD VTVH+LY+ Y I E EQ + +DR Sbjct: 4 MKTLVLVVHPNIESSRINKKWKEAVLSEPD-VTVHDLYEKYRDQPIDVEFEQQQLLAHDR 62 Query: 61 IVLQFPIQWYSMPALLKQWLDGVFTTSWLYETGGKAVAGKELVLAMSIGGDESTYQSGGM 120 IV QFP+ WYS P LLKQW D VFT W + GG + GKE V AMSIG E +YQ+GG Sbjct: 63 IVFQFPLYWYSSPPLLKQWFDEVFTFGWAHGPGGNKLKGKEWVTAMSIGSPEHSYQAGGY 122 Query: 121 IGFTISELIRPVQVFSNQVGMTFLPHYKFYGANKATEDQIDNSAQRYVEHITSPDLNPVV 180 F+ISEL +P Q ++ VGMT+LP + Y AN ++ +I SA RYV+HIT+ +LNP V Sbjct: 123 NLFSISELTKPFQASAHLVGMTYLPSFAEYRANTISDQEIAESANRYVKHITNIELNPKV 182 Query: 181 VRKRMLAEM 189 +R L ++ Sbjct: 183 RLQRYLKQL 191 >gb|AAL66420.1| nitroreductase [Bacillus amyloliquefaciens] Length = 174 Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 1/171 (0%) Query: 1 MSILIVAAHPRIEHSRVNKRWLSELRGYPDQVTVHELYKAYPHFTIHAENEQDLVARYDR 60 M +L++A HP +E+S VNK W EL+ + D++TV ELYK YP I AE E+ L +YDR Sbjct: 1 MKVLVLAVHPDMENSAVNKAWAEELKKH-DELTVRELYKEYPDGQIDAEKERQLCEQYDR 59 Query: 61 IVLQFPIQWYSMPALLKQWLDGVFTTSWLYETGGKAVAGKELVLAMSIGGDESTYQSGGM 120 IV QFP+ WYS P LLK W+D V + W Y + GKA+ GKEL+LA+S+G E YQ+GG Sbjct: 60 IVFQFPLYWYSAPPLLKTWMDHVLSYGWAYGSKGKALHGKELMLAVSVGAGEDAYQAGGS 119 Query: 121 IGFTISELIRPVQVFSNQVGMTFLPHYKFYGANKATEDQIDNSAQRYVEHI 171 FT+SEL+RP Q +N GMT+LP + YG N A I ++A+R +I Sbjct: 120 NHFTLSELLRPFQAMANFTGMTYLPAFALYGVNGADATDIHDNAKRLAAYI 170 >ref|NP_390524.1| similar to NAD(P)H oxidoreductase [Bacillus subtilis] sp|P54439|YRKL_BACSU Putative NAD(P)H oxidoreductase yrkL pir||B69977 NAD(P)H oxidoreductase homolog yrkL - Bacillus subtilis dbj|BAA12367.1| YrkL [Bacillus subtilis] emb|CAB14588.1| yrkL [Bacillus subtilis subsp. subtilis str. 168] Length = 174 Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 86/173 (49%), Positives = 115/173 (66%), Gaps = 1/173 (0%) Query: 1 MSILIVAAHPRIEHSRVNKRWLSELRGYPDQVTVHELYKAYPHFTIHAENEQDLVARYDR 60 M L++ HP +E S VNK W++ L+ D +TVH+LY YP+F I E EQ L+ ++R Sbjct: 1 MKTLVIVIHPNLETSVVNKTWMNRLKQEKD-ITVHDLYGEYPNFIIDVEKEQQLLLDHER 59 Query: 61 IVLQFPIQWYSMPALLKQWLDGVFTTSWLYETGGKAVAGKELVLAMSIGGDESTYQSGGM 120 IV QFP+ WYS PALLKQW D V T W Y TGG + GKEL+LA+S G ES YQ+GG Sbjct: 60 IVFQFPMYWYSSPALLKQWEDDVLTHGWAYGTGGTKLHGKELLLAISSGAQESDYQAGGE 119 Query: 121 IGFTISELIRPVQVFSNQVGMTFLPHYKFYGANKATEDQIDNSAQRYVEHITS 173 TISELIRP QV +N +GM FLP + YG +++ + NSA+R V+++ + Sbjct: 120 YNITISELIRPFQVTANYIGMRFLPAFTQYGTLHLSKEDVKNSAERLVDYLKA 172 >ref|NP_391480.1| similar to NAD(P)H oxidoreductase [Bacillus subtilis] sp|P80871|GS14_BACSU General stress protein 14 (GSP14) pir||C70069 NAD(P)H oxidoreductase homolog ywrO - Bacillus subtilis emb|CAB07787.1| ywrO [Bacillus subtilis] emb|CAB15616.1| ywrO [Bacillus subtilis subsp. subtilis str. 168] Length = 175 Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 85/174 (48%), Positives = 110/174 (63%), Gaps = 1/174 (0%) Query: 1 MSILIVAAHPRIEHSRVNKRWLSELRGYPDQVTVHELYKAYPHFTIHAENEQDLVARYDR 60 M IL++A HP +E S VNK W EL + D +TV +LYK YP I EQ L YDR Sbjct: 1 MKILVLAVHPHMETSVVNKAWAEELSKH-DNITVRDLYKEYPDEAIDVAKEQQLCEEYDR 59 Query: 61 IVLQFPIQWYSMPALLKQWLDGVFTTSWLYETGGKAVAGKELVLAMSIGGDESTYQSGGM 120 IV QFP+ WYS P LLK+W D V T W + + G A+ GKEL+LA+S G + YQ+GG Sbjct: 60 IVFQFPLYWYSSPPLLKKWQDLVLTYGWAFGSEGNALHGKELMLAVSTGSEAEKYQAGGA 119 Query: 121 IGFTISELIRPVQVFSNQVGMTFLPHYKFYGANKATEDQIDNSAQRYVEHITSP 174 ++ISEL++P Q SN +GM +LP Y FYG N A + I +SA+R E+I P Sbjct: 120 NHYSISELLKPFQATSNLIGMKYLPPYVFYGVNYAAAEDISHSAKRLAEYIQQP 173 >ref|NP_979737.1| unnamed protein product [Bacillus cereus ATCC 10987] gb|AAS42345.1| unnamed protein product [Bacillus cereus ATCC 10987] Length = 178 Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 113/180 (62%), Gaps = 4/180 (2%) Query: 1 MSILIVAAHPRIEHSRVNKRWLSELRGYPDQVTVHELYKAYPHFTIHAENEQDLVARYDR 60 M L++ AHP IE S++NKRW+ EL Y D++TVHELYKA P++ + E EQ L+ +DR Sbjct: 2 MKTLVIVAHPDIEKSKINKRWIEELEKYSDEITVHELYKAAPNWEFNVEEEQKLLVEHDR 61 Query: 61 IVLQFPIQWYSMPALLKQWLDGVFTTSWLYETGGKAVAGKELVLAMSIGGDESTYQSGGM 120 + QFP+ WYS P LLK+W D V T + Y + G V GKE +A+SIGG E Y++ G+ Sbjct: 62 YIFQFPLYWYSSPPLLKKWFDDVLTYGFAYGSKGDKVKGKEFGVAISIGGLEKDYENSGI 121 Query: 121 IGFTISELIRPVQVFSNQVGMTFLPHYKFYGAN-KATEDQIDNSAQRYVEHITSPDLNPV 179 T+ EL +P Q M F+P + YGA K ++++ID SA YV ++ + + + + Sbjct: 122 ---TMDELTKPFQATCLYTDMKFIPSFYLYGAEYKLSDEEIDKSAPEYVRYVMNKEYSNI 178 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 301,405,558 Number of extensions: 11871014 Number of successful extensions: 30517 Number of sequences better than 1.0e-05: 113 Number of HSP's gapped: 30443 Number of HSP's successfully gapped: 113 Length of query: 197 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 78 Effective length of database: 434,140,797 Effective search space: 33862982166 Effective search space used: 33862982166 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)