BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0040.p
         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR05187.1| hypothetical protein ANT8C10.12 [uncultured marin...    66   3e-10
gb|EAJ81775.1| unknown [environmental sequence]                        64   1e-09
gb|EAJ82173.1| unknown [environmental sequence]                        60   1e-08
gb|EAI16690.1| unknown [environmental sequence]                        59   3e-08
gb|EAI30128.1| unknown [environmental sequence]                        56   2e-07

>gb|AAR05187.1| hypothetical protein ANT8C10.12 [uncultured marine proteobacterium
           ANT8C10]
          Length = 133

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 4   LSTIRKEILIEAPPEQVWDAVSDIGAVHYRLVPGYTENTLVDGYERTLLLPNGGMTREYI 63
           + T+ +EI+   P E +WD +SD+    +  VP   + TL +G  R   +   G  +E I
Sbjct: 1   MKTLTEEIIFNCPAESLWDILSDVSRCDW--VPTIDQMTL-EGDCRVFEMEGMGKVKEQI 57

Query: 64  VSIDDEERRMAYAVVEGRMPFLHHHASFQVFPHGDNGAKLIWITDFLPTHLAPEI 118
           + +D++  R+ Y+ +E R P  HH A+ Q+        K +W T+  P   A  I
Sbjct: 58  LLLDNDAMRLQYSAIETRTPLDHHLATMQISSIDAASCKFLWTTEIEPEIFADAI 112


>gb|EAJ81775.1| unknown [environmental sequence]
          Length = 127

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 4   LSTIRKEILIEAPPEQVWDAVSDIGAVHYRLVPGYTENTLVDGYERTLLLPNGGMTREYI 63
           +  +++E+ +     ++W+ +SD+G   Y  VP   + TL D   R+  +   G   E I
Sbjct: 1   MKILKEEVELHCSANKLWEILSDVG--RYDWVPSIEDITLSDDC-RSFEMKGIGKITEKI 57

Query: 64  VSIDDEERRMAYAVVEGRMPFLHHHASFQVFPHGDNGAKLIWITDFLPTHLAPEIEARIK 123
           +  D++E  + Y+ +E  +P  HH A+ QVFP  +    L WIT+  P   +  I   + 
Sbjct: 58  LKCDEQEMILQYSAIETPVPIEHHLATMQVFPISEQECSLSWITEISPDVFSTGIHQGML 117

Query: 124 RGAEVMKETI 133
              E +K+ I
Sbjct: 118 TSIEGIKKVI 127


>gb|EAJ82173.1| unknown [environmental sequence]
          Length = 129

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 15  APPEQVWDAVSDIGAVHYRLVPGYTENTLVDGYERTLLLPNGGMTREYIVSIDDEERRMA 74
            P E++W+ +SD+    +  VP   E   ++G  RT  +   G  RE I+S+D+    + 
Sbjct: 12  CPAEELWEILSDVSRCDW--VPS-VEKISLEGVSRTFEMEGIGKVRENILSLDNVNMELQ 68

Query: 75  YAVVEGRMPFLHHHASFQVFPHGDNGAKLIWITDFLP 111
           Y+ VE   P  HH A+ +V    +N  +L+W T+  P
Sbjct: 69  YSAVETPNPIEHHLATMRVIKLDNNSCELLWTTEIKP 105


>gb|EAI16690.1| unknown [environmental sequence]
          Length = 127

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 4   LSTIRKEILIEAPPEQVWDAVSDIGAVHYRLVPGYTENTLVDGYERTLLLPNGGMTREYI 63
           +  +++EI ++ P  ++W  +SD+    +  VP   E  L D   R+  +   G   E I
Sbjct: 1   MKILKEEIKLQCPANELWAILSDLRRSDW--VPSIEEIILNDDC-RSFEMKGMGKITEKI 57

Query: 64  VSIDDEERRMAYAVVEGRMPFLHHHASFQVFPHGDNGAKLIWITDFLPTHLAPEI 118
           +   ++E  + Y+ +E   P  HH A+ Q+FP  +    LIWIT+  P   A  I
Sbjct: 58  LKCHEQEMILQYSAIETPAPIEHHLATMQIFPINEQECLLIWITEISPDIFAESI 112


>gb|EAI30128.1| unknown [environmental sequence]
          Length = 128

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 17  PEQVWDAVSDIGAVHYRLVPGYTENTLVDGYERTLLLPNGGMTREYIVSIDDEERRMAYA 76
           PEQ+W+ +SD+    +  VPG  +  L +G  R   +   G  +E I+  ++E   + Y+
Sbjct: 14  PEQLWEILSDLSRSDW--VPGVDQINL-EGDVRVFDMAGMGQVKEKILECNEENLTLKYS 70

Query: 77  VVEGRMPFLHHHASFQVFPHGDNGAKLIWITDFLPTHLAPEIEARIKRGAEVMKETIEA 135
            +E  +   HH A  ++ P  +NG+   W T+  P   A  IE  +K   E +K  +++
Sbjct: 71  AIETVVTLNHHLACMEIEPL-ENGSLFKWTTEIDPEIFAESIEESMKISLESLKSILDS 128


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 222,090,932
Number of extensions: 8622422
Number of successful extensions: 16443
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 16447
Number of HSP's successfully gapped: 8
Length of query: 142
Length of database: 757,237,578
Length adjustment: 103
Effective length of query: 39
Effective length of database: 477,582,381
Effective search space: 18625712859
Effective search space used: 18625712859
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)