BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0031.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_782501.1| putative transcriptional regulator [Clostridium... 261 8e-69 ref|ZP_00103844.1| COG3315: O-Methyltransferase involved in poly... 251 1e-65 ref|NP_692160.1| hypothetical protein OB1239 [Oceanobacillus ihe... 180 2e-44 ref|NP_979565.1| conserved hypothetical protein [Bacillus cereus... 175 7e-43 ref|NP_657120.1| DUF142, Domain of unknown function DUF142 [Baci... 174 9e-43 >ref|NP_782501.1| putative transcriptional regulator [Clostridium tetani E88] gb|AAO36438.1| putative transcriptional regulator [Clostridium tetani E88] Length = 215 Score = 261 bits (667), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 115/205 (56%), Positives = 148/205 (72%) Query: 6 QYLIFAAGYDTFAYRQPEWAAKLQIFEIDHPATADDKRRRVSALNPTKPSNLHYISFDFN 65 QYLIFAAGYDTFAYRQPEWA +QIFE+DHP T DK++R+ + K SN+HYIS DF Sbjct: 11 QYLIFAAGYDTFAYRQPEWAKNIQIFELDHPFTGVDKQKRIETVMTEKTSNIHYISIDFT 70 Query: 66 EQDLQKRLLDCRAFDPGVISFCSLLGITYYLSKDVFKHFLATITKLLPGGSSIVFDYPDE 125 E+ ++ L++C F+ ISFCSLLG+ YYL+K F H + TI+ ++P GSSIVFDY D+ Sbjct: 71 EETWERNLIECSQFEKNKISFCSLLGVNYYLTKQNFAHAINTISNIVPKGSSIVFDYNDD 130 Query: 126 HTFTPSAKERTQKQVMMAARAGEPMQACYSYEELERMLEDVNLLIYQHFTPDQITGQLFK 185 +T A ER +KQ MA A E M YSY ELE++L++ N +IY+H TP++IT Q FK Sbjct: 131 KAYTEKAGERAKKQATMAGAANEKMLGSYSYMELEKLLDESNFMIYEHLTPNEITDQYFK 190 Query: 186 AYNDSQPAHPIRAFDNVNYCLAVKR 210 YN + P H + AFDNVNYCLAVK+ Sbjct: 191 KYNKANPNHQMTAFDNVNYCLAVKK 215 >ref|ZP_00103844.1| COG3315: O-Methyltransferase involved in polyketide biosynthesis [Desulfitobacterium hafniense] Length = 307 Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 115/208 (55%), Positives = 145/208 (69%) Query: 3 GARQYLIFAAGYDTFAYRQPEWAAKLQIFEIDHPATADDKRRRVSALNPTKPSNLHYISF 62 GARQYLI AGYD+FAYRQP WA ++QIFEIDHPATA DKR ++ T P N+ YI+ Sbjct: 100 GARQYLILGAGYDSFAYRQPAWAKEIQIFEIDHPATAKDKRAKLEKAKLTIPDNVQYITA 159 Query: 63 DFNEQDLQKRLLDCRAFDPGVISFCSLLGITYYLSKDVFKHFLATITKLLPGGSSIVFDY 122 DF +Q+ Q L F+ SFCS+LG+ YYLS F ++ ++ LLP GSSIVFDY Sbjct: 160 DFMKQEWQTALTQNIKFNKNQTSFCSILGVVYYLSVQTFVDLISGLSALLPVGSSIVFDY 219 Query: 123 PDEHTFTPSAKERTQKQVMMAARAGEPMQACYSYEELERMLEDVNLLIYQHFTPDQITGQ 182 PDE+T+T ER KQ M+AA A E M A YSYE++E +L LIY+H TP ++TGQ Sbjct: 220 PDENTYTDKGGERANKQAMLAATANEKMLAGYSYEDMENVLSSHGFLIYEHLTPGEVTGQ 279 Query: 183 LFKAYNDSQPAHPIRAFDNVNYCLAVKR 210 F+AYN + P HP+ AFDNVNYCLAV++ Sbjct: 280 YFEAYNHANPLHPMTAFDNVNYCLAVRK 307 >ref|NP_692160.1| hypothetical protein OB1239 [Oceanobacillus iheyensis HTE831] dbj|BAC13195.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 305 Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 131/209 (62%), Gaps = 7/209 (3%) Query: 3 GARQYLIFAAGYDTFAYRQPEWAAKLQIFEIDHPATADDKRRRVSALNPTKPSNLHYISF 62 GA QY+I AG DTF +R PE KL+IFE+D+P+T D KR R++ N P N H++ Sbjct: 103 GAEQYVILGAGLDTFCFRNPELDPKLEIFEVDYPSTQDFKRNRLAKSNYQIPDNFHFVPM 162 Query: 63 DFNEQDLQKRLLDCRAFDPGVISFCSLLGITYYLSKDVFKHFLATITKLLPGGSSIVFDY 122 DF + + + L+D F P +F SLLG++YYL+K+ + + + +P GSSIVFDY Sbjct: 163 DFTKDIILQNLID-EGFQPNKKTFYSLLGVSYYLTKEEISNLIKELFAEIPLGSSIVFDY 221 Query: 123 PDEHTFTPSA-KERTQKQVMMAARAGEPMQACYSYEELERMLEDVNLLIYQHFTPDQITG 181 D+ F R Q V MA+ +GEPM++C++Y+E+E++LED LLIY+H +PD I Sbjct: 222 ADDKLFEEKGLSNRVQNMVQMASASGEPMKSCFTYDEIEKLLEDAGLLIYEHLSPDVINN 281 Query: 182 QLFKAYNDSQPAHPIRAFDNVNYCLAVKR 210 + F +D ++AF+ ++Y AVK+ Sbjct: 282 KFFSDRSDY-----LKAFETIHYIHAVKK 305 >ref|NP_979565.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS42173.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 306 Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 88/209 (42%), Positives = 128/209 (61%), Gaps = 8/209 (3%) Query: 3 GARQYLIFAAGYDTFAYRQPEWAAKLQIFEIDHPATADDKRRRVSALNPTKPSNLHYISF 62 GA+QY+I AG DTF++R E K++IFE+DHP+T K+ R+ P+NLH++S Sbjct: 105 GAKQYVILGAGLDTFSFRHRELENKIEIFEVDHPSTQQFKKERIKEAELEVPNNLHFVSM 164 Query: 63 DFNEQDLQKRLLDCRAFDPGVISFCSLLGITYYLSKDVFKHFLATITKLLPGGSSIVFDY 122 DF + L F+ +F SLLG++YYL+K+ + + +++P GSSIVFDY Sbjct: 165 DFT-KGFSYEQLRNEGFEHKK-TFFSLLGVSYYLTKEELASLIECLFEMVPEGSSIVFDY 222 Query: 123 PDEHTFTPSA-KERTQKQVMMAARAGEPMQACYSYEELERMLEDVNLLIYQHFTPDQITG 181 PDE+ FT R + V MAA GEPM++CYSY E+E +LE LLIY+H +P+ I Sbjct: 223 PDENLFTEKGLSNRVENMVKMAAVGGEPMKSCYSYAEMEALLEKAGLLIYEHLSPEDINA 282 Query: 182 QLFKAYNDSQPAHPIRAFDNVNYCLAVKR 210 F+ ND ++AF+ V+Y AVK+ Sbjct: 283 FYFEGRNDY-----LKAFETVHYVHAVKK 306 >ref|NP_657120.1| DUF142, Domain of unknown function DUF142 [Bacillus anthracis A2012] Length = 304 Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 89/213 (41%), Positives = 129/213 (60%), Gaps = 16/213 (7%) Query: 3 GARQYLIFAAGYDTFAYRQPEWAAKLQIFEIDHPATADDKRRRVSALNPTKPSNLHYISF 62 GA+QY+I AG DTF++R E K++IFE+DHP+T K+ R+ P+NLH+IS Sbjct: 103 GAKQYVILGAGIDTFSFRHRELENKIEIFEVDHPSTQQFKKERIEEAEFEIPNNLHFISM 162 Query: 63 DFNE----QDLQKRLLDCRAFDPGVISFCSLLGITYYLSKDVFKHFLATITKLLPGGSSI 118 DF + + LQ + + +F SLLG+TYYL+K+ + + ++P GSSI Sbjct: 163 DFTKGFSYEQLQNEGFENKK------TFFSLLGVTYYLTKEELSSLIECLFVMVPEGSSI 216 Query: 119 VFDYPDEHTFTPSA-KERTQKQVMMAARAGEPMQACYSYEELERMLEDVNLLIYQHFTPD 177 VFDYPDE+ FT R + V MAA GEPM++C+SY E+E +LE LLIY+H +P+ Sbjct: 217 VFDYPDENLFTEKGLSNRVENMVKMAAIGGEPMKSCFSYAEMEALLEKAGLLIYEHLSPE 276 Query: 178 QITGQLFKAYNDSQPAHPIRAFDNVNYCLAVKR 210 I F+ ND ++AF+ V+Y AVK+ Sbjct: 277 DINTFYFEGRNDY-----LKAFETVHYVHAVKK 304 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 322,895,497 Number of extensions: 12844970 Number of successful extensions: 36984 Number of sequences better than 1.0e-05: 33 Number of HSP's gapped: 36960 Number of HSP's successfully gapped: 33 Length of query: 210 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 90 Effective length of database: 431,425,698 Effective search space: 38828312820 Effective search space used: 38828312820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 123 (52.0 bits)