BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0026.p (187 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388444.1| nuclease inhibitor [Bacillus subtilis] >gi|2833... 132 4e-30 ref|NP_832078.1| DinB protein [Bacillus cereus ATCC 14579] >gi|2... 129 4e-29 ref|NP_656234.1| hypothetical protein predicted by GeneMark [Bac... 128 6e-29 ref|NP_844761.1| DNA polymerase, DinB family [Bacillus anthracis... 124 1e-27 ref|NP_978719.1| DNA polymerase, DinB family [Bacillus cereus AT... 123 3e-27 >ref|NP_388444.1| nuclease inhibitor [Bacillus subtilis] sp|Q02886|DINB_BACSU DinB protein pir||F69615 nuclease inhibitor dinB - Bacillus subtilis dbj|BAA19396.1| DNA DAMAGE-INDUCIBLE DINB PROTEIN, SIMILAR PRODUCT IN SYNECHOCYSTIS. [Bacillus subtilis] emb|CAB12370.1| nuclease inhibitor [Bacillus subtilis subsp. subtilis str. 168] Length = 172 Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 101/165 (61%), Gaps = 13/165 (7%) Query: 24 FEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFFRAGGVTDM 83 +EY+VWAN+++ L+EL +E+Y + I SVFP+I + H+Y+ D GW+ F ++D Sbjct: 9 YEYNVWANQQIFNRLKELPKEIYHQEIQSVFPSISHVLSHVYLSDLGWIEVFSGKTLSDA 68 Query: 84 SAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDI----EVVYPS-G 138 A QLKE T+ K IEE+E + L+E++ +F + + + ++ PS G Sbjct: 69 LA-LAEQLKEQ-------TEAKEIEEMEDLFLRLSERYILFLQQKEQLNKPLQIQNPSSG 120 Query: 139 AFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLY 183 + + L H+VNHGTYHRGNITAMLRQ G+ PTDYG YL+ Sbjct: 121 IMKTTVSELLPHVVNHGTYHRGNITAMLRQAGYASAPTDYGLYLF 165 >ref|NP_832078.1| DinB protein [Bacillus cereus ATCC 14579] gb|AAP09279.1| DinB protein [Bacillus cereus ATCC 14579] Length = 174 Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 15/179 (8%) Query: 16 VKQYIRQQFEYHVWANRKVCRYLQELT--EEVYQKNIDSVFPTIYDAMVHIYVIDHGWLS 73 +K YI +Q +YH WAN ++ L+EL E ++ + I SVFP+I D VHIY+ D WL Sbjct: 1 MKDYILKQCDYHAWANTRLFNRLKELPNYETIFNEQIQSVFPSIKDTFVHIYITDQVWLH 60 Query: 74 FFRAGGVTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDIEV 133 +++ ++ + L + K + ELE+M +N+A Q++ F + D+ Sbjct: 61 ILHGKS--------MNEAIQDREDLRKQIETKSLHELEKMFENMANQYKDFLITIQDVNA 112 Query: 134 VYP-----SGAFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLYTLSQ 187 V+ G + L+ +QH+VNHGTYHRGNITAM+RQ+GH T D+ YL+ + + Sbjct: 113 VFVIENPYVGKLETSILELVQHVVNHGTYHRGNITAMIRQLGHSSTMMDFVLYLHMVKK 171 >ref|NP_656234.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 174 Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 15/179 (8%) Query: 16 VKQYIRQQFEYHVWANRKVCRYLQELT--EEVYQKNIDSVFPTIYDAMVHIYVIDHGWLS 73 +K+Y+ +Q +YH WAN ++ ++EL E ++ + I SVFP+I D HIY+ D WL Sbjct: 1 MKEYMLKQVDYHAWANIRLFDRIKELPNYEAIFTEQIQSVFPSIKDTFAHIYITDQVWLH 60 Query: 74 FFRAGGVTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDIEV 133 + + Q +EN+ + + K + ELE++ +N+A Q++ F + D+ Sbjct: 61 ILHGKSMNEAI-----QDRENLRKQIET---KSLYELEKLFENMANQYKDFLSTIQDVNA 112 Query: 134 VYP-----SGAFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLYTLSQ 187 V+ +GA + L+ +QH+VNHGTYHRGNITAM+RQ+GH T D+ YL+ + + Sbjct: 113 VFVIENPYAGALETSILELVQHVVNHGTYHRGNITAMIRQLGHSSTMMDFVLYLHMVKK 171 >ref|NP_844761.1| DNA polymerase, DinB family [Bacillus anthracis str. Ames] gb|AAP26247.1| DNA polymerase, DinB family [Bacillus anthracis str. Ames] Length = 170 Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 100/173 (57%), Gaps = 15/173 (8%) Query: 22 QQFEYHVWANRKVCRYLQELT--EEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFFRAGG 79 +Q +YH WAN ++ ++EL E ++ + I SVFP+I D HIY+ D WL Sbjct: 3 KQVDYHAWANIRLFDRIKELPNYEAIFTEQIQSVFPSIKDTFAHIYITDQVWLHILHGKS 62 Query: 80 VTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDIEVVYP--- 136 + + Q +EN+ + + K + ELE++ +N+A Q++ F + D+ V+ Sbjct: 63 MNEAI-----QDRENLRKQIET---KSLYELEKLFENMANQYKDFLSTIQDVNAVFVIEN 114 Query: 137 --SGAFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLYTLSQ 187 +GA + L+ +QH+VNHGTYHRGNITAM+RQ+GH T D+ YL+ + + Sbjct: 115 PYAGALETSILELVQHVVNHGTYHRGNITAMIRQLGHSSTMMDFVLYLHMVKK 167 >ref|NP_978719.1| DNA polymerase, DinB family [Bacillus cereus ATCC 10987] gb|AAS41327.1| DNA polymerase, DinB family [Bacillus cereus ATCC 10987] Length = 170 Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 15/173 (8%) Query: 22 QQFEYHVWANRKVCRYLQELT--EEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFFRAGG 79 +Q +YH WAN ++ L+EL + ++ + + SVFP+I D HIY+ D WL Sbjct: 3 KQVDYHAWANLRLFNRLKELPNYDTIFTEQMQSVFPSIKDTFAHIYITDQVWLHILHGKS 62 Query: 80 VTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDIEVVYP--- 136 +++ + + L T+ K + ELE+M +N+A Q++ F + D+ V+ Sbjct: 63 --------MNEAIQGREELRKQTENKSLHELEKMFENMANQYKDFLSTIQDVNAVFVIEN 114 Query: 137 --SGAFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLYTLSQ 187 G + L+ +QH+VNHGTYHRGNITAM+RQ+GH T D+ YL+ + + Sbjct: 115 PYVGKLETSILELVQHVVNHGTYHRGNITAMIRQLGHSSTMMDFVLYLHMVKK 167 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 292,500,197 Number of extensions: 11478841 Number of successful extensions: 34187 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 34173 Number of HSP's successfully gapped: 12 Length of query: 187 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 69 Effective length of database: 436,855,896 Effective search space: 30143056824 Effective search space used: 30143056824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)