BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0006.p (1128 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_814966.1| conserved hypothetical protein [Enterococcus fa... 1060 0.0 ref|NP_465253.1| some similarities to cellobiose-phosphorylase [... 895 0.0 ref|NP_471174.1| some similarities to cellobiose-phosphorylase [... 891 0.0 ref|NP_404249.1| hypothetical protein [Yersinia pestis] >gi|2212... 764 0.0 ref|ZP_00018473.1| hypothetical protein [Chloroflexus aurantiacus] 64 3e-08 >ref|NP_814966.1| conserved hypothetical protein [Enterococcus faecalis V583] gb|AAO81036.1| conserved hypothetical protein [Enterococcus faecalis V583] Length = 1091 Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/1120 (48%), Positives = 748/1120 (66%), Gaps = 38/1120 (3%) Query: 11 IQKGDLTFTFLESGDLYQAFGGKMMINQLLSSSVDGAPGNLYARLHLSGGIQAFPLLGVK 70 +++ D TFLE+GDL + MMINQL + +DG+ LY R+ I P++G Sbjct: 6 LKQADTVATFLETGDLKELNSCGMMINQLEGNPLDGSMNQLYLRIITGDTINYRPMIGSN 65 Query: 71 SASRFRQDGERLLWQGEIAADQAGTVLDKTIRYQVVFSMADNGVWFWDVTIDGAGVPLDV 130 S S F +L W+GE A +RYQV F + + WFW V + G G+ +D+ Sbjct: 66 SQSDFYLSDNQLTWRGEFEA----------VRYQVDFRLGPSNQWFWRVNVTGTGL-VDI 114 Query: 131 IYTQDVGIASPGAVTSNEAYLSQYIDHTVFEDTAKGYVVCSRQNQPQDGKFPYLQQGLLN 190 +Y QD+G+A+ GAV SNEAY+SQY+DH ++++ + VV SRQNQPQ+ KFP L QG Sbjct: 115 VYGQDIGLATKGAVQSNEAYVSQYLDHHIWQE-GEELVVLSRQNQPQNEKFPALIQGSFQ 173 Query: 191 GAAGFSTDGFQFFGLSYKESNEPEALSRAKLANEVYQYEFAFTALQSPQVQLDGQAR-FT 249 G+STDG+QFFG S+K+ N PEAL + LANEVYQYEFA+TALQ+ VQL +++ F Sbjct: 174 KLVGYSTDGYQFFGRSFKQINTPEALGKRYLANEVYQYEFAYTALQTEAVQLTNESKEFV 233 Query: 250 FYGLFREDHPSAITELEYAASVQEAWQQVQSFGSISAEGEWLSPVSVNSRIGAPLQTLPL 309 FYG E HP A+ E + +A + +F S+ EG P + +G P+ PL Sbjct: 234 FYGAVTETHPQALAEPFLSKEALQAIYETVTFDSL--EGTQDYPPKL---LGEPITGNPL 288 Query: 310 TEAELDALFPHKFQEERAGGKLLAFFTEGYEHVVLKDKELLVERPHGHILMSGDNARLNP 369 TE EL AL+P + Q E+ G+ +FFTE Y HVVL++KE+ +ER HGHIL+SG ++ Sbjct: 289 TEEELAALYPLQTQIEKVAGQTYSFFTENYHHVVLQEKEIAMERAHGHILLSGKGLTVDE 348 Query: 370 EVITTTSYMYGIFNSQVVIGNTNFNKMMSNARSALNIFKTSGQRIYVYTDDQYHLLTMPS 429 +++TT YMYGIFNSQVV+GNT NK+MSN+R+ALN+ K SGQRIY+ + + LLTMPS Sbjct: 349 PLLSTTVYMYGIFNSQVVLGNTTMNKLMSNSRNALNVMKRSGQRIYILENGLWRLLTMPS 408 Query: 430 LYEIGFNYVRWYYKTASDTLVITNYTTMDEPEIRLHVRSAGNIAYRFLVTNQITMNVAEY 489 +E+G N WYYK DT+ + +T+ D I+L V S + AY + V+N + + E Sbjct: 409 AFEMGLNSATWYYKLPKDTIRVRTFTSPDSRVIQLEVTSQKD-AYMWAVSNHLLLGPEE- 466 Query: 490 EVP-YEVSQDAAEGTLTFRAAKSGTSAE-VYPELAYRMHLNGAVYRLGDESILVDGPAQG 547 VP Y++ Q T R + ++ E YPEL Y + ++ + +++ D ++ G A+ Sbjct: 467 -VPTYQLEQTGK----TLRVTGNHSATENYYPELTYALTVDKS-FQVTDSTLF--GGAE- 517 Query: 548 SASLVVMELEASKEWTLTLQGMLEGKERTLNPVSFETEAARYREFLAGVMNGFKLTQSGG 607 A L+V+ +E +++++L + G +E + P+ FE ++Y F+ G+++ F+LT + Sbjct: 518 -AELLVLAIEKTQKFSLLITGSIEDQSLVNTPLDFEKAESQYLAFINGLLHHFELTHT-- 574 Query: 608 GEGELFKVNALAWWYTHNMLVHYSVPHGLEQYGGAAWGTRDVCQGPVEYFLATHKYEQVR 667 + + ++N L WYTHNMLVHY PHGLEQYGGAAWGTRDV QGP E+F AT + + V Sbjct: 575 -DSSVQQMNQLTRWYTHNMLVHYLSPHGLEQYGGAAWGTRDVSQGPTEFFFATQQPKIVA 633 Query: 668 EILLTVFAHQYEDDGSWPQWFMFDKYTHIQQEESHGDIIVWPLKVLGDYLRATQDYAVLE 727 I+ +F +Q+EDDG+WPQWFMFD+Y + ESHGDIIVWPLKV+ DYL T DY++L Sbjct: 634 SIIQHLFENQFEDDGNWPQWFMFDRYEEQKASESHGDIIVWPLKVVTDYLEQTADYSILA 693 Query: 728 VLLPYTRKHSFDFTEQTASLREHALKELNYIKTNFLHDTYLSSYGDGDWDDTLQPANAQL 787 +PYT + T++TASL EH KE+NYI+ +FL +T+LS YGDGDWDDTLQP + +L Sbjct: 694 TEIPYTSRKDNHKTKETASLFEHLKKEINYIEQHFLPETFLSCYGDGDWDDTLQPYDNRL 753 Query: 788 KQYMVSSWTVALTYQTVLGLSNVLENVDAAWSGELRQLAEGIKGDFNRYMLGTDVIPGFL 847 K+ M SSWTVALTYQ + + ++ +DA +S L L GIK DF +YML + IPGF+ Sbjct: 754 KEQMASSWTVALTYQVLKKFAALITEIDATYSQHLAILVAGIKNDFQKYMLADETIPGFI 813 Query: 848 YFEDPADAKLLLHPEDKETGIQYRLLPMTRSMIGELLTPEQMEEHYKLIQEQFLCPDGVR 907 Y E P + ++HP D++TGIQYRLLPMTRSM+ ELLTPEQ+ H ++I+++ PDGVR Sbjct: 814 YMETPETFEQMIHPNDQKTGIQYRLLPMTRSMLAELLTPEQVSHHLEIIEKELTFPDGVR 873 Query: 908 LMNHPAQYAGGVSLHFKRAEQAANFGREIGLQYVHAHIRFVEAMAKTGKRDQVWKGLAVI 967 LMN PA Y GGVS +FKRAEQAANFGREIGLQYVHAHIR+ EAMAK G+RD+ W+ L I Sbjct: 874 LMNKPANYRGGVSTNFKRAEQAANFGREIGLQYVHAHIRYTEAMAKIGQRDKTWQALMQI 933 Query: 968 NPIGIRDAVPNAELRQSNAYFSSSDGKFANRYEAQERFAGLHDGSVPVKGGWRIYSSGPG 1027 NP+ +++ V NAELRQ+NAYFSSSDG F RYE+QE F L DGS+ VKGGWRIYSSGPG Sbjct: 934 NPVQLKEVVHNAELRQANAYFSSSDGDFKTRYESQENFGKLKDGSIGVKGGWRIYSSGPG 993 Query: 1028 IYMNQLISNVLGIREDGGDLIIDPVLPDELDGTRLDFDYAGAPAAFVYHCSQGVLSHVKV 1087 IY+NQLI+ VLGIR+ ++ DP+LP++L G L + P + ++ +Q + + + Sbjct: 994 IYLNQLITAVLGIRQKAQSVVFDPMLPEKLSGLTLTYQLFDKPVTYKFYPNQS--AKIVI 1051 Query: 1088 NGQEVQAERLNNPYRLGGLRIKRADFDRLRSAEGTVVDIY 1127 +GQEV + NPYR GG+ +++ + L + E +V++IY Sbjct: 1052 DGQEVPFKFEENPYREGGMEVQKDEVLSLLN-EASVIEIY 1090 >ref|NP_465253.1| some similarities to cellobiose-phosphorylase [Listeria monocytogenes EGD-e] pir||AH1290 cellobiose-phosphorylase homolog lmo1728 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99806.1| lmo1728 [Listeria monocytogenes] Length = 1086 Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/1115 (44%), Positives = 667/1115 (59%), Gaps = 64/1115 (5%) Query: 11 IQKGDLTFTFLESGDLYQAFGGKMMINQLLSSSVDGAPGNLYARLHLSGGIQAFPLLGVK 70 I+K DL+ F SG+L +M+NQ++ + ++ +Y R H I+ +PLL Sbjct: 7 IKKADLSAAFYPSGELAWLKLKDIMLNQVIQNPLENRLSQIYVRAHFGDKIEIYPLLNKD 66 Query: 71 SASRFRQDGERLLWQGEIAADQAGTVLDKTIRYQVVFSMADNGVWFWDVTIDGAGVPLDV 130 S F ++G + ++G + RY V G WF+DV +DG D+ Sbjct: 67 SEVGFNENG--VEYRGVVGP----------FRYSVQMHFHTRG-WFYDVIVDG-DFEFDL 112 Query: 131 IYTQDVGIASPGAVTSNEAYLSQYIDHTVFEDTAKGYVVCSRQNQPQDGKFPYLQQGLLN 190 +Y QD+G+A AV +NEAY+SQYID+ V E A G+ V +RQNQPQ+ FP +Q G L Sbjct: 113 VYLQDLGLAEQAAVRTNEAYMSQYIDYHVTEG-ATGFTVQARQNQPQNECFPAVQIGALT 171 Query: 191 GAAGFSTDGFQFFGLSYKESNEPEALSRAKLANEVYQYEFAFTALQSPQVQLDGQARFTF 250 G++TDGF +G +YK ++E L L N VYQYEFA ++Q+ G+ +F Sbjct: 172 KIVGYATDGFDIYGTNYKLTSELANLKEKSLPNRVYQYEFAQISIQTELFTNHGET--SF 229 Query: 251 YGLFREDHPSA-------ITELEYAASVQEAWQQVQSFGSISAEGEWLSPVSVNSRIGAP 303 YG E+ P A + EL+ S Q + ++ +N IG P Sbjct: 230 YGYVTENQPKASGAPIGNLAELKSNISEQSYQKSTKAI--------------LNKHIGTP 275 Query: 304 LQTLPLTEAELDALFPHKFQEERAGGKLLAFFTEGYEHVVLKDKELLVERPHGHILMSGD 363 + ++++ L FP + QEE+ LL+FFT Y HVV+++KE +ERPHG IL+ Sbjct: 276 ITGETISDSWLQEKFPDRIQEEKQNAALLSFFTPNYAHVVMREKEAELERPHGSILLDKI 335 Query: 364 NARLNPE-VITTTSYMYGIFNSQVVIGNTNFNKMMSNARSALNIFKTSGQRIYVYTDDQY 422 + LNPE ++ T+YMYG F SQ+V GNTN NK S+AR+ LNI +TSG RIY+ D + Sbjct: 336 DV-LNPEATLSATTYMYGAFLSQLVAGNTNMNKWNSHARNPLNILQTSGLRIYIELDSEL 394 Query: 423 HLLTMPSLYEIGFNYVRWYYKTASDTLVITNYTTMDEPEIRLHVRSAGNIAYRFLVTNQI 482 LL++PS++E NY WYY+ D + + T E + V S +Y+ ++TNQ+ Sbjct: 395 RLLSVPSVWETSTNYSTWYYQWNDDLITVQTTLTAYSKEAFVTVHSEKGNSYKLVLTNQV 454 Query: 483 TMNVAEYEVPYEVSQDAAEGTLTFRAAKSGTSAEVYPELAYRMHLNGAVYRLGDESILVD 542 TM EY+ V ++ +G +T+ A E YPEL +R ++G L DE Sbjct: 455 TMGTNEYDTT--VKKEIKDGIVTYFPADDSPILETYPELQFR--VDGTYNELTDERYFAK 510 Query: 543 GPAQGSASLVVMELEASKEWTLTLQGMLEGKERTLNPVSFETEAARYREFLAGVMNGFKL 602 G+A L V E S + T +Q L E + E + R + F L Sbjct: 511 D-YMGTAGLDVFVFEPSDKATFHVQAKL-TDEFSKPTEDLEADNKVIRASYDELTAQFHL 568 Query: 603 T-QSGGGEGELFKVNALAWWYTHNMLVHYSVPHGLEQYGGAAWGTRDVCQGPVEYFLATH 661 QS E K+N +WY H MLVHY+ PHGLEQY GAAWGTRDV QGP E+FLAT Sbjct: 569 NHQSTTAE----KLNLTVYWYAHQMLVHYASPHGLEQYSGAAWGTRDVSQGPFEFFLATG 624 Query: 662 KYEQVREILLTVFAHQYEDDGSWPQWFMFDKYTHIQQEESHGDIIVWPLKVLGDYLRATQ 721 +R+++LT+F+HQY+D G WPQWFMFDKYT IQQEESHGD+IVWPLK++GDYL + Sbjct: 625 NKAVLRKLVLTIFSHQYQDTGDWPQWFMFDKYTSIQQEESHGDVIVWPLKIIGDYLEMSG 684 Query: 722 DYAVLEVLLPYTRKHSFDFTEQTASLREHALKELNYIKTNFLHDTYLSSYGDGDWDDTLQ 781 D +LE +PY + S FT++ +L EH + I+ F+ T LS+YGDGDWDDTLQ Sbjct: 685 DTEILEEAIPYVDRESKTFTKEQGTLLEHIKLAVKTIEARFMKGTALSNYGDGDWDDTLQ 744 Query: 782 PANAQLKQYMVSSWTVALTYQTVLGLSNVLENVDAAWSGE-LRQLAEGIKGDFNRYMLG- 839 PANAQLK+ MVSSWTVALTYQT L+ L GE LA ++ DF +YM Sbjct: 745 PANAQLKKNMVSSWTVALTYQTFKRLAAFLP------VGEKYETLANNVQADFAKYMTND 798 Query: 840 TDVIPGFLYFEDPADAKLLLHPEDKETGIQYRLLPMTRSMIGELLTPEQMEEHYKLIQEQ 899 TDVIPGFLY E+ ++HPEDKET I+YRL+P+TRS+I EL+ +Q ++++I E Sbjct: 799 TDVIPGFLYLEEGKAPVWMIHPEDKETNIKYRLIPLTRSVISELVDKKQASRNFEIIGEH 858 Query: 900 FLCPDGVRLMNHPAQYAGGVSLHFKRAEQAANFGREIGLQYVHAHIRFVEAMAKTGKRDQ 959 L PDGVRLM+ PA YAGGVS HFKRAEQAANFGRE+GLQYVHAHIR++EA+AK G + Sbjct: 859 LLHPDGVRLMSEPAHYAGGVSTHFKRAEQAANFGREVGLQYVHAHIRYIEALAKIGDK-S 917 Query: 960 VWKGLAVINPIGIRDAVPNAELRQSNAYFSSSDGKFANRYEAQERFAGLHDGSVPVKGGW 1019 W L VINPI I++ VPNA LRQSN YFSSSD F +RY+AQ F+ + +GS+PVKGGW Sbjct: 918 AWHMLDVINPINIKEVVPNAALRQSNTYFSSSDAAFLDRYQAQNEFSRVKEGSIPVKGGW 977 Query: 1020 RIYSSGPGIYMNQLISNVLGIREDGGDLIIDPVLPDELDGTRLDFDYAGAPAAFVYHCS- 1078 RIYSSGPGIY++QLIS+VLGIR+ LI DP+LP+ELDG + P + S Sbjct: 978 RIYSSGPGIYLHQLISSVLGIRQTEETLIFDPILPEELDGLECHIELDNYPLDLTFESSD 1037 Query: 1079 QGVLSHVKVNGQEVQAERLNNPYRLGGLRIKRADF 1113 +G + VNG++ E N YR G L + + + Sbjct: 1038 EGC---IVVNGEKQPVENAANLYRTGALILPKKNL 1069 >ref|NP_471174.1| some similarities to cellobiose-phosphorylase [Listeria innocua] pir||AF1662 cellobiose-phosphorylase homolog [imported] - Listeria innocua (strain Clip11262) emb|CAC97070.1| lin1839 [Listeria innocua] Length = 1086 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/1108 (44%), Positives = 672/1108 (60%), Gaps = 50/1108 (4%) Query: 11 IQKGDLTFTFLESGDLYQAFGGKMMINQLLSSSVDGAPGNLYARLHLSGGIQAFPLLGVK 70 I+K DL+ F SG+L +M+NQ++ + ++ +Y R H+ I+ +PLL Sbjct: 7 IKKADLSAAFYPSGELAWLKLKDIMLNQVIQNPLENRLSQIYVRAHVGDKIEIYPLLSRD 66 Query: 71 SASRFRQDGERLLWQGEIAADQAGTVLDKTIRYQVVFSMADNGVWFWDVTIDGAGVPLDV 130 + F ++G + ++G + RY V G WF+DVT+DG + D+ Sbjct: 67 AEVGFNENG--VEYRGVVGP----------FRYSVQMHFHTRG-WFYDVTVDG-DLEFDL 112 Query: 131 IYTQDVGIASPGAVTSNEAYLSQYIDHTVFEDTAKGYVVCSRQNQPQDGKFPYLQQGLLN 190 +Y QD+G+A AV +NEAY+SQYID+ V E A G+ V +RQNQPQ+ +FP +Q G L Sbjct: 113 VYLQDLGLAEQAAVRTNEAYMSQYIDYHVTEG-ATGFTVQARQNQPQNERFPAVQIGALT 171 Query: 191 GAAGFSTDGFQFFGLSYKESNEPEALSRAKLANEVYQYEFAFTALQSPQVQLDGQARFTF 250 G++TDGF +G +YK ++E L L + VYQYEFA +LQ+ G+ F Sbjct: 172 KIVGYATDGFDIYGTNYKLTSELANLKEKSLPSRVYQYEFAQISLQTELFTNHGET--IF 229 Query: 251 YGLFREDHPSAITELEYAASVQEAWQQVQSFGSISAEGEWLSPVSV-NSRIGAPLQTLPL 309 YG E+ P A + + E +++S +IS + S ++ N IG P+ + Sbjct: 230 YGYATENQPKA------SGAPFENLAELKS--NISEQPYQPSTKAILNKHIGTPITGETI 281 Query: 310 TEAELDALFPHKFQEERAGGKLLAFFTEGYEHVVLKDKELLVERPHGHILMSGDNARLNP 369 +++ L FP + QEE+ G LL+FFT Y HVV+++KE +ERPHG IL+ + LNP Sbjct: 282 SDSWLQENFPDRIQEEQQNGALLSFFTPNYAHVVMREKEAELERPHGSILLDKVDV-LNP 340 Query: 370 E-VITTTSYMYGIFNSQVVIGNTNFNKMMSNARSALNIFKTSGQRIYVYTDDQYHLLTMP 428 E ++ T+YMYG F SQ+V GNTN NK S+AR+ LNI +TSG RIY+ D + LL +P Sbjct: 341 EATLSATTYMYGAFLSQLVAGNTNMNKWNSHARNPLNILQTSGLRIYIELDSELRLLGVP 400 Query: 429 SLYEIGFNYVRWYYKTASDTLVITNYTTMDEPEIRLHVRSAGNIAYRFLVTNQITMNVAE 488 S++E NY WYY+ D + + T D E + V S +Y+ ++TNQ+TM E Sbjct: 401 SVWETSTNYSTWYYQWNGDLITVQTTLTADSKEAFVTVHSEKGHSYKLVLTNQVTMGTNE 460 Query: 489 YEVPYEVSQDAAEGTLTFRAAKSGTSAEVYPELAYRMHLNGAVYRLGDESILVDGPAQGS 548 Y+ V ++ +G +T+ A+ E YP L +R ++G L DE G+ Sbjct: 461 YDTT--VKKEIKDGIVTYFPAEDSPILETYPALQFR--VDGTYNELTDERYFAKDYV-GT 515 Query: 549 ASLVVMELEASKEWTLTLQGMLEGKERTLNPVSFETEAARYREFLAGVMNGFKLT-QSGG 607 A L V E S + T +Q L E + E R + F L QS Sbjct: 516 AGLDVFVFEPSDKATFHVQAKL-SDEFSKPTEDLEANNKVIRASYDELTAQFHLNHQSTT 574 Query: 608 GEGELFKVNALAWWYTHNMLVHYSVPHGLEQYGGAAWGTRDVCQGPVEYFLATHKYEQVR 667 E K+N +WY H MLVHY+ PHGLEQY GAAWGTRDV QGP E+FLAT +R Sbjct: 575 AE----KLNLTVYWYAHQMLVHYASPHGLEQYSGAAWGTRDVSQGPFEFFLATGNKAVLR 630 Query: 668 EILLTVFAHQYEDDGSWPQWFMFDKYTHIQQEESHGDIIVWPLKVLGDYLRATQDYAVLE 727 +++LT+F+HQY+D G WPQWFMFDKYT IQQEESHGD+IVWPLK++GDYL + D +LE Sbjct: 631 KLVLTIFSHQYQDTGDWPQWFMFDKYTSIQQEESHGDVIVWPLKIIGDYLEMSGDAGILE 690 Query: 728 VLLPYTRKHSFDFTEQTASLREHALKELNYIKTNFLHDTYLSSYGDGDWDDTLQPANAQL 787 +P+ + S FT++ +L EH + I+ F+ T LS+YGDGDWDDTLQPANAQL Sbjct: 691 EAIPFVDRESKTFTKEQGTLLEHIELAVKTIEARFMKGTALSNYGDGDWDDTLQPANAQL 750 Query: 788 KQYMVSSWTVALTYQTVLGLSNVLENVDAAWSGE-LRQLAEGIKGDFNRYMLG-TDVIPG 845 K+ MVSSWTVALTYQT L+ L GE LA+ ++ DF +YM TDVIPG Sbjct: 751 KKNMVSSWTVALTYQTFKRLAAFLP------VGEKYETLAKNVQADFAKYMTNDTDVIPG 804 Query: 846 FLYFEDPADAKLLLHPEDKETGIQYRLLPMTRSMIGELLTPEQMEEHYKLIQEQFLCPDG 905 FLY E+ ++HPEDKET I+YRL+P+TRS+I EL+ +Q ++++I E L PDG Sbjct: 805 FLYLEEGKAPVWMIHPEDKETNIKYRLIPLTRSVISELVDKKQASRNFEIIGEHLLHPDG 864 Query: 906 VRLMNHPAQYAGGVSLHFKRAEQAANFGREIGLQYVHAHIRFVEAMAKTGKRDQVWKGLA 965 VRLM+ PA YAGGVS HFKRAEQAANFGRE+GLQYVHAHIR++EA+AK G + W L Sbjct: 865 VRLMSEPAHYAGGVSTHFKRAEQAANFGREVGLQYVHAHIRYIEALAKIGDK-SAWHMLD 923 Query: 966 VINPIGIRDAVPNAELRQSNAYFSSSDGKFANRYEAQERFAGLHDGSVPVKGGWRIYSSG 1025 VINPI I++ VPNA LRQSN YFSSSD F +RY+AQ F + +GS+PVKGGWRIYSSG Sbjct: 924 VINPINIKEVVPNAALRQSNTYFSSSDAAFLDRYQAQNEFGRVKEGSIPVKGGWRIYSSG 983 Query: 1026 PGIYMNQLISNVLGIREDGGDLIIDPVLPDELDGTRLDFDYAGAPAAFVYHCSQGVLSHV 1085 PGIY++QLIS+VLGIR+ LI DP+LP+ELDG + P + + + Sbjct: 984 PGIYLHQLISSVLGIRQTEDALIFDPILPEELDGLECHIELDNYPLDLTFESADE--GSI 1041 Query: 1086 KVNGQEVQAERLNNPYRLGGLRIKRADF 1113 VNG++ E N YR G L + + + Sbjct: 1042 VVNGEKQPVENGANLYRTGALILPKKNL 1069 >ref|NP_404249.1| hypothetical protein [Yersinia pestis] ref|NP_670865.1| hypothetical [Yersinia pestis KIM] ref|NP_994232.1| hypothetical protein YP2928 [Yersinia pestis biovar Mediaevails str. 91001] pir||AE0075 hypothetical protein YPO0610 [imported] - Yersinia pestis (strain CO92) emb|CAC89464.1| hypothetical protein [Yersinia pestis CO92] gb|AAM87116.1| hypothetical [Yersinia pestis KIM] gb|AAS63109.1| hypothetical protein YP2928 [Yersinia pestis biovar Mediaevails str. 91001] Length = 1117 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1134 (38%), Positives = 644/1134 (56%), Gaps = 43/1134 (3%) Query: 10 SIQKGDLTFTFLESGDLYQAFGGKMMINQLLSSSVDGAPGNLYAR-LHLSGGIQAFPLL- 67 S Q G L F F++ L G +M+N + +D A N++ R L SG ++ PLL Sbjct: 12 SAQGGVLQFNFMQGNMLKNMLAGDIMLNLFDTPRLDMAIANIFLRQLDDSGIVRVTPLLF 71 Query: 68 GVKSASRFRQDGERLLWQGEIAADQAGTVLDKTIRYQVVFSMADNGVWFWDVTID---GA 124 ++ + ++WQ T D T + FS +++ V ++ Sbjct: 72 HNDQLVTYKNAQDEIIWQT--------TAPDFTAFVTLSFSHEQEETYYYSVRVENHSAQ 123 Query: 125 GVPLDVIYTQDVGIASPGAVTSNEAYLSQYIDHTVFEDTAKGYVVCSRQNQPQDGKFPYL 184 + D+IY QD+ ++ GA +NE+Y SQY+DH VF GY V SRQN PQ P L Sbjct: 124 ALRYDLIYGQDLSLSDAGATKTNESYCSQYLDHKVFSLDKYGYTVSSRQNLPQSTGNPLL 183 Query: 185 QQGLLNGAAGFSTDGFQFFGLSYKESNEPEALSRAKLANEVYQYEFAFTALQSPQVQLDG 244 Q G + A GFSTDG+QFF YK S+ P ++ L N YQYE A+ ALQ V L Sbjct: 184 QLGSFSPAVGFSTDGYQFFAKQYKFSHLPTIVTEPSLENRNYQYEMAYVALQLQPVTLSA 243 Query: 245 --QARFTFYGLFREDHPSA-ITELEYAASVQEAWQQVQSFGSISAEGEWLSPVSVNSRIG 301 A FYG + P A I + A ++ ++Q Q E SP Sbjct: 244 GDSADSVFYGFYLSHQPEANIAQAFDVARIRANYRQPQR----EPATEQASPTQ-QGYDQ 298 Query: 302 APLQTLPLTEAELDALFPHKFQ-EERAGGKLLAFFTEGYEHVVLKDKELLVERPHGHILM 360 PL LT E++ LF + Q E+ G+LL+FF + +V L +KE +ERP GHI+ Sbjct: 299 RPLSGDKLTAEEIEQLFDGEKQFVEQLDGELLSFFYQEANYVTLAEKERHLERPTGHIIS 358 Query: 361 SGDNARLNPEVITTTSYMYGIFNSQVVIGNTNFNKMMSNARSALNIFKTSGQRIYVYTDD 420 SG+N ++ +T Y+YG+FNS + +GNT+FNK++ R+ LN FK+SGQRI V Sbjct: 359 SGNNIDFTNPIMNSTHYIYGVFNSHLTLGNTSFNKLLGVNRNMLNQFKSSGQRILVQIGG 418 Query: 421 QYHLLTMPSLYEIGFNYVRWYYKTASDTLVITNYTTMDEPEIRLHVRSAGNI-AYRFLVT 479 +Y +L MPS YE+G N+ RW YK A + + + + EP I+L + +G+ +V+ Sbjct: 419 EYRILAMPSAYEVGANFSRWIYKLAEGMIQVRAFASQSEPVIQLDIAVSGHSQPLNVIVS 478 Query: 480 NQITMNVAEYEVPYEVSQDAAEGTLTFRAAKSGTSAEVYPELAYRMHLNGAVYRLGDESI 539 +Q+ M E E +V + G L + +++G +A R G Sbjct: 479 HQLIMGNLEEEATVQVER---HGDL-LQISRTGDDHGPRFSIATRGGFTGV-------ER 527 Query: 540 LVDGPAQGSASLVVMELEASKEWTLTLQGMLEGKERTLNPVSFETEAARYREFLAGVMNG 599 VD +QG ++++ + +++ ++ G+L G + + FE E Y ++N Sbjct: 528 YVDSDSQG-VQYLLLQGQIAQQASIAFGGVLNGVDSRGKWLDFEHERQAYHAQYRALLND 586 Query: 600 FKLTQSGGGEGELFKVNALAWWYTHNMLVHYSVPHGLEQYGGAAWGTRDVCQGPVEYFLA 659 F ++ S + + K+N W+THN L HYS PHGLEQ GAAWGTRDV QGP+E+F+A Sbjct: 587 FSVSFSAAPQ-QAQKLNHAMHWFTHNALTHYSSPHGLEQPAGAAWGTRDVSQGPIEFFMA 645 Query: 660 THKYEQVREILLTVFAHQYEDDGSWPQWFMFDKYTHIQQEESHGDIIVWPLKVLGDYLRA 719 +Y+QV IL + HQY + G+WPQWFMFD+Y +QQ+ESHGDI+VWPLK L DYL A Sbjct: 646 MGRYQQVEAILCQTYRHQYLETGTWPQWFMFDEYAQVQQQESHGDIVVWPLKALADYLLA 705 Query: 720 TQDYAVLEVLLPYTR-KHSFDFTEQTASLREHALKELNYIKTNFLHDTYLSSYGDGDWDD 778 T A+L+ L YT K +F FT + +L +H +++++I + + TYLSSYGDGDWDD Sbjct: 706 TDRVALLDTRLSYTSIKQNFAFTGEQETLLQHVQRQIDHIVAHLVPGTYLSSYGDGDWDD 765 Query: 779 TLQPANAQLKQYMVSSWTVALTYQTVLGLSNVLENVD--AAWSGELRQLAEGIKGDFNRY 836 TLQPAN L++ MVS WT+ LT QT+ L+ L+ A + + L ++ D+++Y Sbjct: 766 TLQPANQSLRENMVSGWTIPLTLQTLKTLTKALQAYPQFADFIARIVTLTSNMEADYHKY 825 Query: 837 MLGTDVIPGFLYFEDPADAKLLLHPEDKETGIQYRLLPMTRSMIGELLTPEQMEEHYKLI 896 ++ VI GF++F + +A+ LLHP D T I+YRLLP RS+I E E E+H K+I Sbjct: 826 LIKDGVISGFIHF-NQGEAEYLLHPTDTTTQIKYRLLPAKRSIISESFDKEMAEQHMKII 884 Query: 897 QEQFLCPDGVRLMNHPAQYAGGVSLHFKRAEQAANFGREIGLQYVHAHIRFVEAMAKTGK 956 + + PDGVRLM+ A+Y G +FKRAE +AN GREIGLQY HAHIRF+EA+ K G Sbjct: 885 MDNLMYPDGVRLMDRMAEYKAGKQTYFKRAELSANLGREIGLQYCHAHIRFIEALCKMGM 944 Query: 957 RDQVWKGLAVINPIGIRDAVPNAELRQSNAYFSSSDGKFANRYEAQERFAGLHDGSVPVK 1016 +++ L P+GI+++VPNAELRQ+N+YFSSSD KF +RY+A F L G+V K Sbjct: 945 AQELYDNLFKTIPVGIQESVPNAELRQANSYFSSSDAKFDDRYQAYNNFDQLKTGAVAAK 1004 Query: 1017 GGWRIYSSGPGIYMNQLISNVLGIREDGGDLIIDPVLPDELDGTRLDFDYAGAPAAFVYH 1076 GWRIYSSGPGIY+NQ++SNVLG+R GDL++DPV+ + L++ P + Sbjct: 1005 AGWRIYSSGPGIYINQIVSNVLGVRYQAGDLLLDPVISRQFGDVTLNYQLYNLPVTLRIY 1064 Query: 1077 CSQGVLS--HVKVNGQEVQAERLNNPYRLGGLRIKRADFDRLRSAEGTVVDIYM 1128 QG + V ++GQ + +NPYR G I R + + +A + ++IY+ Sbjct: 1065 PQQGEFTPKRVLLDGQSLAFTLQDNPYRSGAALIHRQEIEGRLTAH-SQLEIYL 1117 >ref|ZP_00018473.1| hypothetical protein [Chloroflexus aurantiacus] Length = 793 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 113/466 (24%), Positives = 187/466 (40%), Gaps = 66/466 (14%) Query: 642 AAWGTRDVCQGPVEYFLATHKYEQVREILLTVFAHQYEDDGSWPQWFMFDKYTHIQQEES 701 A +G RD Q + FL R+ILL A Q+ + WF + Sbjct: 358 AGYGFRDQLQD-CQIFLVCDPALAKRQILLHA-AQQFVEGDVLHWWFSIRGGG---PRTN 412 Query: 702 HGDIIVWPLKVLGDYLRATQDYAVLEVLLPYTRKHSFDFTEQTASLREHALKELNYIKTN 761 D ++W V+ YL+ T D A+L+ ++PY + E A + Sbjct: 413 CSDDLLWLPFVVDSYLQETGDVAILDEMVPYLNGPAEPLYLHCKRAIERAFSRFSPRGIP 472 Query: 762 FLHDTYLSSYGDGDWDDTLQPANAQLKQYMVSSWTVALTYQTVL--GLSNVLENVDAAWS 819 + GD DW+D L QL+ S W Y T+L + + D A++ Sbjct: 473 LM--------GDHDWNDGLNAVGTQLRG--ESFWVAEFLY-TILERWIPLAQQRSDEAFA 521 Query: 820 GELRQLAEGIKGDFNRYMLGTDVIPGFLYFEDPADAKLLLHPEDKETGIQYRLLPMTRSM 879 + ++ NRY G D G + + DA L L + E G + L+P ++ Sbjct: 522 ERCTAVRTTLRWAMNRY--GWD---GEWFLQATTDAGLPLGSQQNEEGRIF-LMPNIWAV 575 Query: 880 IGELLTPEQMEEHYKLIQEQFLCPDGVRLMNHPAQYAGGVSLHFKRAEQAANFGREIGLQ 939 I + ++ + + + LC G L+N+PA + + + A RE G Sbjct: 576 ISGITDQQRAWQAMQAVSRYLLCDYGT-LLNYPAFTRPRSDIGY--VTRYAPGLRENGGV 632 Query: 940 YVHAHIRFVEAMAKTGKRDQVWKGLAVINPIGIRDAVPNAELRQSNAYFSSSDGKFANRY 999 Y HA V A A G D ++ I P PN S+D RY Sbjct: 633 YTHAATWSVWAYALLGDVDHAYEAYRRICP-------PN----------RSAD---IERY 672 Query: 1000 EAQERFA-GLHDGSVPV---KGGWRIYSSGPGIYMNQLISN-VLGIREDGGDLIIDPVLP 1054 +A+ G DG +GGW Y +G +++++ ++ +LGIR L+IDP++P Sbjct: 673 KAEPYVTPGNIDGPQSPYFGRGGWTWY-TGSAQWLHRVATHWILGIRPQIEGLLIDPLIP 731 Query: 1055 DELDGTRLDFDYAGAPAAFVY--------HCSQGVLSHVKVNGQEV 1092 + + + GA +Y H ++GV+S ++V+GQ + Sbjct: 732 ATWERFTVRRTFRGA----IYEIEVLNPNHVNRGVIS-LEVDGQPL 772 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,721,279,115 Number of extensions: 75452102 Number of successful extensions: 156700 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 156677 Number of HSP's successfully gapped: 9 Length of query: 1128 Length of database: 757,237,578 Length adjustment: 137 Effective length of query: 991 Effective length of database: 385,269,015 Effective search space: 381801593865 Effective search space used: 381801593865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)