BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0001.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471176.1| similar to sugar ABC transporter binding protei... 379 e-104 ref|NP_465255.1| similar to sugar ABC transporter binding protei... 377 e-103 ref|NP_637562.1| ABC transporter sugar binding protein [Xanthomo... 221 3e-56 ref|NP_642627.1| ABC transporter sugar binding protein [Xanthomo... 217 5e-55 ref|ZP_00038782.1| COG1653: ABC-type sugar transport system, per... 214 3e-54 >ref|NP_471176.1| similar to sugar ABC transporter binding protein [Listeria innocua] pir||AH1662 sugar ABC transporter binding protein homolog lin1841 [imported] - Listeria innocua (strain Clip11262) emb|CAC97072.1| lin1841 [Listeria innocua] Length = 414 Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/397 (50%), Positives = 270/397 (68%), Gaps = 11/397 (2%) Query: 23 CGSSKNESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGIKVEVQAIPWDNAHDKLLT 81 CG SK+++ SSD+K L VW MG A ++ +A+ + K+ GI+V+VQ IPW NAHDKLLT Sbjct: 22 CGGSKDDANSSDSKVLNVWAMGDEAKSLKELAQKFT-KDTGIEVKVQVIPWANAHDKLLT 80 Query: 82 AVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFFDGAVQTTKYQDKTV 141 AVASK+GPDVVQMGTTW+PEF AGAL D+ +EK +M ++ FF G+V+TT++ KT Sbjct: 81 AVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTY 140 Query: 142 AIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGAGHYALPIEAKDSIY 201 +P+Y ETR +FYRTDLL +VGY E PKTWDEL DA+ KL +K G Y I+ + Sbjct: 141 GVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKL-SKRGKDMYGFAIDPNEQTT 199 Query: 202 TAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSPKGTD--LDTVAAF- 258 IF QNGS L D + P FN+ +V+T+ +L SF G +P TD LD +F Sbjct: 200 GFIFGRQNGSPLFD---KDGTPVFNKKPFVDTVTYLDSFIKNGSAPD-TDLGLDASQSFG 255 Query: 259 KDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAKKTNTSSIGGADLSIFNYSKNPDE 318 DG + MF+SGPWM+ T+K+ AP+IDGKWA LP K+ N SS+GGA+LSIF YS D+ Sbjct: 256 GDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENNESSLGGANLSIFKYSNKKDD 315 Query: 319 AAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDALK-DPMIQAFGKQLENSRPAPMVTE 377 A KF+ +M++ D QL + + +NSMPA AWE+D LK DP + FG+Q++ + P P++ + Sbjct: 316 ALKFMDYMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQ 375 Query: 378 YEEIAKAAMASFEQITVGGADTQTELDKLNAKANELL 414 +EEIA+ S+EQI GGAD QT++D N + LL Sbjct: 376 FEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVEALL 412 >ref|NP_465255.1| similar to sugar ABC transporter binding protein [Listeria monocytogenes EGD-e] pir||AB1291 sugar ABC transporter binding protein homolog lmo1730 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99808.1| lmo1730 [Listeria monocytogenes] Length = 414 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/397 (49%), Positives = 269/397 (67%), Gaps = 11/397 (2%) Query: 23 CGSSKNESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGIKVEVQAIPWDNAHDKLLT 81 CG SK+++ S D+K L VW MG A ++ +A+ + K+ GI+V+VQ IPW NAHDKLLT Sbjct: 22 CGGSKDDANSGDSKVLNVWAMGDEAKSLKELAQKFT-KDTGIEVKVQVIPWANAHDKLLT 80 Query: 82 AVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFFDGAVQTTKYQDKTV 141 AVASK+GPDVVQMGTTW+PEF AGAL D+ +EK +M ++ FF G+V+TT++ KT Sbjct: 81 AVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTY 140 Query: 142 AIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGAGHYALPIEAKDSIY 201 +P+Y ETR +FYRTDLL +VGY E PKTWDEL DA+ KL +K G Y I+ + Sbjct: 141 GVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKL-SKRGKDMYGFAIDPNEQTT 199 Query: 202 TAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSPKGTD--LDTVAAF- 258 IF QNGS L D + P FN+ +V+T+ +L SF G +P TD LD +F Sbjct: 200 GFIFGRQNGSPLFD---KDGTPVFNKKPFVDTVTYLDSFIKNGSAPD-TDLGLDASQSFG 255 Query: 259 KDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAKKTNTSSIGGADLSIFNYSKNPDE 318 DG + MF+SGPWM+ T+K+ AP+IDGKWA LP K+ N SS+GGA+LSIF YS D+ Sbjct: 256 GDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENNESSLGGANLSIFKYSDKKDD 315 Query: 319 AAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDALK-DPMIQAFGKQLENSRPAPMVTE 377 A KF+ +M++ D QL + + +NSMPA AWE+D LK DP + FG+Q++ + P P++ + Sbjct: 316 ALKFMDYMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQ 375 Query: 378 YEEIAKAAMASFEQITVGGADTQTELDKLNAKANELL 414 +EEIA+ S+EQI GGAD QT++D N + LL Sbjct: 376 FEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVETLL 412 >ref|NP_637562.1| ABC transporter sugar binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM41486.1| ABC transporter sugar binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 448 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 200/396 (50%), Gaps = 9/396 (2%) Query: 29 ESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGIKVEVQAIPWDNAHDKLLTAVASKN 87 E + T++ W MG A+ V + +E +NPGIKV+VQ IP AH+KLLTA A+ Sbjct: 21 ERSEQGQTTVRFWAMGKEAEVVAELVDEFERQNPGIKVDVQNIPMTAAHEKLLTAFAADG 80 Query: 88 GPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFFDGAVQTTKYQDKTVAIPFYV 147 PDV Q+G TW+PEFA L+ M PY+ + + +++F G T +P+YV Sbjct: 81 LPDVCQLGNTWLPEFALLDTLEPMQPYVARSSIVDPKDYFPGVWDTNLVDGTLYGVPWYV 140 Query: 148 ETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGAGHYALPIEAKDSIYTAIFAW 207 +TR +FYR DLL E GY E PKTW E++ + G YA+ + + FA Sbjct: 141 DTRLLFYRKDLLREAGYTEMPKTWAEMEQVMAAIKRHVGPDRYAILMPLNEFEQQLSFAL 200 Query: 208 QNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSPKGTDLDTVAA---FKDGTMG 264 Q L+ + F + + + F + Y +G +PK ++ F +G Sbjct: 201 QQDDRLL--RDHDNYGNFRGEGFRKALGFYDTMYQKGWAPKVSETQVSNVWYEFFNGYYA 258 Query: 265 MFISGPWMIQTVK-EKAPEIDGKWAVTTLPAKKTNTSSI-GGADLSIFNYSKNPDEAAKF 322 ++SGPW ++ K + P ++GKW LP + I GG+ L IF S++ D A K Sbjct: 259 FYLSGPWNVREFKLRQPPGMEGKWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKDAAWKL 318 Query: 323 IAFMAEQDAQLKFYETSNSMPALKAAWENDAL-KDPMIQAFGKQLENSRPAPMVTEYEEI 381 I ++++ Q +F+ +P ++ W+ +L D + AFG QLE + P V E+E I Sbjct: 319 IEYLSQPTVQARFHAIIGDLPPRRSTWKLPSLANDELAHAFGDQLERVKATPKVLEWERI 378 Query: 382 AKAAMASFEQITVGGADTQTELDKLNAKANELLGNK 417 + E++ GG + + +L+ + +E+L + Sbjct: 379 VQEMRLVTERVVRGGQSHEDAVQELDKRVDEILAKR 414 >ref|NP_642627.1| ABC transporter sugar binding protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37163.1| ABC transporter sugar binding protein [Xanthomonas axonopodis pv. citri str. 306] Length = 456 Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 123/406 (30%), Positives = 202/406 (49%), Gaps = 9/406 (2%) Query: 19 VAAGCGSSKNESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGIKVEVQAIPWDNAHD 77 VA G++ E + T++ W MG A+ V + +E++NP I V+VQ IP AH+ Sbjct: 11 VALCAGATGCERSDPGKTTVRFWAMGKEAEVVAELVADFEKQNPTIHVDVQNIPMTAAHE 70 Query: 78 KLLTAVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFFDGAVQTTKYQ 137 KLLTA A+ PDV Q+G TW+PEFA L+ M PY+ + + ++F G T Sbjct: 71 KLLTAFAADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSKIVDPADYFPGVWDTNLVD 130 Query: 138 DKTVAIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGAGHYALPIEAK 197 +P+YV+TR +FYR DLL E GY + PKTW E++ + K G YA+ + Sbjct: 131 GTLYGVPWYVDTRLLFYRKDLLREAGYSQMPKTWAEMEQVMAAIKRKVGPDRYAILMPLN 190 Query: 198 DSIYTAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSPKGTDLDTVAA 257 + FA Q L+ + F + + + F + Y +G +PK ++ Sbjct: 191 EFEQQLSFALQQDDRLL--RDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKVSETQVSNV 248 Query: 258 ---FKDGTMGMFISGPWMIQTVK-EKAPEIDGKWAVTTLPAKKTNTSSI-GGADLSIFNY 312 F +G ++SGPW ++ K + P ++G W LP + I GG+ L IF Sbjct: 249 WYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGNWGTAPLPGPNGLGAGIAGGSSLVIFKS 308 Query: 313 SKNPDEAAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDAL-KDPMIQAFGKQLENSRP 371 S++ D + K I ++++ Q +F+ +P ++ W+ +L D + AFG QLE + Sbjct: 309 SQHKDASWKLIEYLSQPQVQARFHAIIGDLPPRRSTWKLPSLANDALAHAFGDQLERVKA 368 Query: 372 APMVTEYEEIAKAAMASFEQITVGGADTQTELDKLNAKANELLGNK 417 P V E+E I + E++ GG + +L+ + +E+L + Sbjct: 369 TPKVLEWERIVQEMRLVTERVVRGGQSHDAAVQELDQRVDEILAKR 414 >ref|ZP_00038782.1| COG1653: ABC-type sugar transport system, periplasmic component [Xylella fastidiosa Dixon] Length = 430 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 121/420 (28%), Positives = 210/420 (50%), Gaps = 17/420 (4%) Query: 5 TGLVITSALLGFSLVAAGCGSSKNESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGI 63 +G + L G +VA G SS++ T++ W MG A+ V + + +E++ PGI Sbjct: 3 SGKCLVWLLAGLVMVACGHESSRH--------TVRFWAMGREAEVVAALVRDFEKEYPGI 54 Query: 64 KVEVQAIPWDNAHDKLLTAVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKA 123 VE+Q IP AH+KLLTA A+ PDV Q+G TW+PEFA AL+ + PY+ + + Sbjct: 55 HVELQNIPMSAAHEKLLTAFAADRLPDVCQLGNTWLPEFALLDALEPLQPYVSTSKVVMS 114 Query: 124 ENFFDGAVQTTKYQDKTVAIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVA 183 ++F G +T + +P+YV+TR +FYR D+L GY TW + + A + Sbjct: 115 ADYFPGVWETNVVAGRLYGVPWYVDTRLLFYRKDILEAAGYRAPLTTWADWERAMAAIKR 174 Query: 184 KGGAGHYALPIEAKDSIYTAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDE 243 GA YA+ + + A Q L+ + F P + ++F ++ Y++ Sbjct: 175 YVGADRYAILMPLNEFEQQLSLALQQDDPLL--RDNDNYGNFRSPGFRRALHFYRTIYEQ 232 Query: 244 GLSPKGTDL---DTVAAFKDGTMGMFISGPWMIQTVK-EKAPEIDGKWAVTTLPAKKTNT 299 +PK ++ + F +G + SGPW ++ K + P + G+W LP Sbjct: 233 EWAPKVSETQVSNVWYEFFNGNYAFYFSGPWNVREFKLRQPPNMSGQWGTMALPGPNGLG 292 Query: 300 SSI-GGADLSIFNYSKNPDEAAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDAL-KDP 357 + I GG+ L IF S++ A + + +++ Q +F+ +P ++ W L +DP Sbjct: 293 AGIAGGSSLVIFKSSQSKQAAWRLVEYLSRPQVQARFHSIIGDLPPRRSTWHFPGLAEDP 352 Query: 358 MIQAFGKQLENSRPAPMVTEYEEIAKAAMASFEQITVGGADTQTELDKLNAKANELLGNK 417 + +AF +QLE + P V E+E I + EQ+ GG Q +++L+ + +++L + Sbjct: 353 LARAFAEQLERVKATPKVLEWERIVQEMRLITEQVVRGGLSEQQAVEQLDQRVDKILAKR 412 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.129 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 618,132,534 Number of extensions: 25667497 Number of successful extensions: 52088 Number of sequences better than 1.0e-05: 478 Number of HSP's gapped: 51696 Number of HSP's successfully gapped: 479 Length of query: 417 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 289 Effective length of database: 409,704,906 Effective search space: 118404717834 Effective search space used: 118404717834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)