BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0008.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_923382.1| ABC transporter ATP-binding protein [Gloeobacte... 262 6e-69 ref|NP_809214.1| ATP-binding transport protein natA (Na+ ABC tra... 221 1e-56 ref|NP_809208.1| ABC transporter ATP-binding protein [Bacteroide... 219 8e-56 ref|NP_422360.1| ABC transporter, ATP-binding protein [Caulobact... 217 2e-55 ref|ZP_00175936.1| hypothetical protein Cwat415701 [Crocosphaera... 216 4e-55 >ref|NP_923382.1| ABC transporter ATP-binding protein [Gloeobacter violaceus] dbj|BAC88377.1| ABC transporter ATP-binding protein [Gloeobacter violaceus PCC 7421] Length = 289 Score = 262 bits (670), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 140/283 (49%), Positives = 183/283 (64%), Gaps = 3/283 (1%) Query: 1 VLVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTW 60 +L I K+ K + GI ++ NGAGK+TLM++LATI+ PT G++ + Sbjct: 1 MLDIHKLSKVFPSGAVGISGVSLSLDGGVLGLLGANGAGKTTLMQMLATITTPTAGQIRF 60 Query: 61 NGRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRRIDELLELL 120 D+ PD LRR LGYLPQDFGVY NLTA EFL Y AA+KG+ SRA R+ E+LEL+ Sbjct: 61 QDVDILRQPDYLRRRLGYLPQDFGVYDNLTAFEFLNYFAALKGVS-SRA--RVLEMLELV 117 Query: 121 NLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLSQ 180 NL+ R G +SGGMKQR+GIAQAL+N+P +LIVDEPT GLDPEER+RFRNLL D+ Sbjct: 118 NLHTVAHRSAGTFSGGMKQRLGIAQALINNPDLLIVDEPTAGLDPEERVRFRNLLGDIGS 177 Query: 181 GRIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEAR 240 G++++ STHIVSDIE+ A I ++ K RLLA APP LL G+VW V+ Q R Sbjct: 178 GKLVILSTHIVSDIESIATMIAVIKKGRLLACAPPEALLATTGGRVWEAVLSSAQFDGIR 237 Query: 241 SKWLISGSVRIGEGVRVRMVAGEXXXXXXXXXXXXLEDAYLFL 283 S +S +VR +G+ R+VA + LEDA+L+L Sbjct: 238 SSLKLSAAVRKPDGIHARIVAQDCPLQNAVPVEANLEDAFLYL 280 >ref|NP_809214.1| ATP-binding transport protein natA (Na+ ABC transporter) [Bacteroides thetaiotaomicron VPI-5482] gb|AAO75408.1| ATP-binding transport protein natA (Na+ ABC transporter) [Bacteroides thetaiotaomicron VPI-5482] Length = 503 Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/278 (41%), Positives = 175/278 (62%), Gaps = 2/278 (0%) Query: 7 VGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTWNGRDLA 66 +GKR K F ++ ++ PNGAGKSTLMR++ I + + G + NG D Sbjct: 222 IGKR-RKPFKALRGVSFEIQTGMFGLLGPNGAGKSTLMRVICGIFEQSYGSIWINGLDTR 280 Query: 67 AHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGL-DGSRANRRIDELLELLNLNGA 125 + +EL+ ++G+LPQ+FG Y N+T+ EFL Y A +KG+ DG R+D +L+ +++ Sbjct: 281 IYREELQSLIGFLPQEFGTYENMTSWEFLDYQAILKGIVDGDLRRERLDYVLKAVHMYER 340 Query: 126 RKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLSQGRIIL 185 + KIG +SGGMKQRIGIA LL+ P++L+VDEPT GLDP ER+RFRNLL +LS+ RI++ Sbjct: 341 KDEKIGSFSGGMKQRIGIALILLHLPRILVVDEPTAGLDPRERIRFRNLLVELSKDRIVI 400 Query: 186 FSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEARSKWLI 245 FSTHI+ DI ++ +++V++ K L PS ++++A GKVW I + + ++ K L+ Sbjct: 401 FSTHIIEDISSSCNQVVVINKGELKYFGDPSDMVEMANGKVWQFNIDKTEFEKVLDKSLV 460 Query: 246 SGSVRIGEGVRVRMVAGEXXXXXXXXXXXXLEDAYLFL 283 ++ G+ +RVR ++ LEDAYL L Sbjct: 461 IHHIQEGDTIRVRYLSVGQPYEGAVEVEANLEDAYLCL 498 >ref|NP_809208.1| ABC transporter ATP-binding protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO75402.1| ABC transporter ATP-binding protein [Bacteroides thetaiotaomicron VPI-5482] Length = 297 Score = 219 bits (557), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 118/283 (41%), Positives = 169/283 (59%), Gaps = 2/283 (0%) Query: 2 LVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTWN 61 ++I+ + K Y +KD+N PNGAGKSTLMRIL + +PT G+V Sbjct: 3 IIIKNLNKIYPNGNHALKDVNLEIPAGMFGLLGPNGAGKSTLMRILVALMEPTSGQVEIC 62 Query: 62 GRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRR-IDELLELL 120 G DL E+R +LGYLPQDF + EFL Y A + G+ SR ++ +DE+LE + Sbjct: 63 GYDLMKQRKEIRGILGYLPQDFRFFAKYKTYEFLDYAARLSGMTHSRQRKQAVDEMLENV 122 Query: 121 NLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLSQ 180 L R+R SGGMK+R+GIAQAL++ PKV+IVDEPT GLDPEER+RFRNLL+++S+ Sbjct: 123 GLFDVRERYANKLSGGMKRRLGIAQALIHHPKVIIVDEPTTGLDPEERIRFRNLLSEVSE 182 Query: 181 GRI-ILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEA 239 + I+ STHIV DI +T + + ++ + ++ + P +LKLAEGKVW +QL E Sbjct: 183 NDVTIILSTHIVGDISSTCNNMALMNRGQVSFNGSPQDMLKLAEGKVWRIRAAGDQLHEI 242 Query: 240 RSKWLISGSVRIGEGVRVRMVAGEXXXXXXXXXXXXLEDAYLF 282 K+ + ++ G V++VA E LE AY++ Sbjct: 243 DKKYPVISTIPSGTIWEVQVVADEVEGYEAEPFPPNLEHAYVY 285 >ref|NP_422360.1| ABC transporter, ATP-binding protein [Caulobacter crescentus CB15] pir||D87691 ABC transporter, ATP-binding protein CC3566 [imported] - Caulobacter crescentus gb|AAK25528.1| ABC transporter, ATP-binding protein [Caulobacter crescentus CB15] Length = 294 Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 100/244 (40%), Positives = 157/244 (64%), Gaps = 1/244 (0%) Query: 1 VLVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTW 60 +L+IE + Y + +++ PNGAGKSTLMR +AT+ PT G + + Sbjct: 1 MLIIENLTHVYGNGTRALDEVSLTIPRGMYGLLGPNGAGKSTLMRTIATLQAPTSGHIRF 60 Query: 61 NGRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANR-RIDELLEL 119 D+ HP+ELR+ LGYLPQDFGVYP ++A + L +MA +KG+ G + + ++ LL Sbjct: 61 GDIDVLKHPEELRKTLGYLPQDFGVYPRVSAYDMLDHMAVLKGISGGKERKATVEHLLNQ 120 Query: 120 LNLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLS 179 +NL RK+ I G+SGGM+QR GIAQAL+ DP+++IVDEPT GLDPEER RF NLLA++ Sbjct: 121 VNLWDVRKKAIAGFSGGMRQRFGIAQALIGDPRLIIVDEPTAGLDPEERNRFLNLLAEIG 180 Query: 180 QGRIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEA 239 + +++ STHIV D+ + I+ ++ + P+ L+ +G++W +I + +L+ A Sbjct: 181 ENVVVILSTHIVEDVSDLCPAMAIICNGAIVREGAPADLVAQLKGRIWKKIIDKAELEAA 240 Query: 240 RSKW 243 ++++ Sbjct: 241 KARY 244 >ref|ZP_00175936.1| hypothetical protein Cwat415701 [Crocosphaera watsonii WH 8501] Length = 297 Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 118/288 (40%), Positives = 171/288 (59%), Gaps = 3/288 (1%) Query: 1 VLVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTW 60 +L I+++ K Y+ +++I+ PNGAGKSTLMR LAT+ P G VT Sbjct: 1 MLNIQELNKTYSNGIKALQNISLTIESGIFGLLGPNGAGKSTLMRTLATLQDPDSGLVTL 60 Query: 61 NGRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRR-IDELLEL 119 +G D+ P + R LGYLPQDFGVYPN++A E L +A KG R R + L+L Sbjct: 61 DGIDIFQDPQKARGWLGYLPQDFGVYPNVSAEELLDLLAVFKGFVKPRQRREMVAHQLQL 120 Query: 120 LNLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLS 179 +NL RK+K+G +SGGM+QR GIAQALL +PK++IVDEP GLDP ER+RF+NLLA++S Sbjct: 121 VNLYEKRKQKLGTFSGGMRQRFGIAQALLGEPKLVIVDEPMAGLDPSERIRFQNLLAEIS 180 Query: 180 QGRIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEA 239 + R+++ STHIV D+ + ++ IL + +++ P QL++ GKVW V+ + Sbjct: 181 EDRVLILSTHIVEDVASLCPQMAILNQGKIVTQGCPLQLMEQLHGKVWMKVMSPTEAGTI 240 Query: 240 RSKWLISGSVRIGEGVR-VRMVAGEXXXXXXXXXXXXLEDAYLFLRSG 286 +W I + R+ +G R VR+++ L D Y SG Sbjct: 241 NEEWTII-TARMLQGKRYVRILSDAAPDEGFQGVEPELNDVYFSALSG 287 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 385,252,786 Number of extensions: 14525313 Number of successful extensions: 102198 Number of sequences better than 1.0e-05: 18432 Number of HSP's gapped: 83857 Number of HSP's successfully gapped: 19403 Length of query: 291 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 167 Effective length of database: 420,565,302 Effective search space: 70234405434 Effective search space used: 70234405434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)