BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0555.0004.p (466 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAR99615.1| putative UDP-galactose-lipid carrier transferase ... 562 e-159 ref|ZP_00098824.1| COG2148: Sugar transferases involved in lipop... 385 e-105 ref|NP_712690.1| Putative colanic biosynthesis UDP-glucose lipid... 288 1e-76 ref|ZP_00165041.1| hypothetical protein Selo123101 [Synechococcu... 281 3e-74 ref|ZP_00018359.1| hypothetical protein [Chloroflexus aurantiacus] 271 3e-71 >gb|AAR99615.1| putative UDP-galactose-lipid carrier transferase [Geobacillus stearothermophilus] Length = 471 Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust. Identities = 266/468 (56%), Positives = 346/468 (73%), Gaps = 2/468 (0%) Query: 1 MIRRNQRFLTQLYMVADFLVIQLAFLAAWWLKFRSGWLEYSETLPIESYAYWSFIYGGIA 60 +IR +RFLT+LY DF ++Q AF AW LKF+ LP+E Y +WSF+YG IA Sbjct: 4 VIRGRERFLTKLYAFVDFAMMQGAFFLAWVLKFKVFHNGVGGHLPLEDYLFWSFVYGAIA 63 Query: 61 VLIGIVLSLYLPKRKKRFVDEFLKIFQVHIMAVFMLLGLMFFLKEIDVSRQYLAIYMGFN 120 ++IG ++ LY PKRK++F +E K+ QVH +++F+LL ++F K +DVSR +L +Y +N Sbjct: 64 IVIGYLVELYAPKRKEKFSNELAKVLQVHTLSMFVLLSVLFTFKTVDVSRSFLLLYFAWN 123 Query: 121 VLSIMLYRYVLKKMLKSLREKGLNRQFVLILGAGTLGKRFYNNLVQYPELGYETIGFLDD 180 ++ + +YRY++K+ L++LR+KG N+QFVLI+GAG++G++++ NL +PE G E +GFLDD Sbjct: 124 LILVSIYRYIVKQSLRTLRKKGYNKQFVLIIGAGSIGRKYFENLQMHPEFGLEVVGFLDD 183 Query: 181 FHTWDDIEEQRYKPILGTVDELPGMLEMLPVDEVILALPLDAHSKYPAIIAACEKAGVRT 240 F T E YKPI+G +L +L +DEVI+ALPL A+ KY IIA CEK GVR Sbjct: 184 FRTKHAPEFAHYKPIIGQTADLEHVLSHQLIDEVIVALPLQAYPKYREIIAVCEKMGVRV 243 Query: 241 LIIPDFFDYLPARPYFDNFAGMPMINVRDIPLDMTGNKLAKRXXXXXXXXXXXXXXXPVM 300 IIPDF+D LPA P+F+ F +P+INVRD+PLD N++ KR P+M Sbjct: 244 SIIPDFYDILPAAPHFEIFGDLPIINVRDVPLDELRNRVLKRSFDIVFSLVAIIVTSPIM 303 Query: 301 LLVALGVRLTSPGPVIFKQERVGLNRRNFMMYKFRSMKMQQEGVEDTGWSTPVDPRRTKF 360 LL+A+G++LTSPGP+IFKQERVGLNRR F MYKFRSMK + V DT W+ DPRRTKF Sbjct: 304 LLIAIGIKLTSPGPIIFKQERVGLNRRTFYMYKFRSMKPMPQSVSDTQWTVESDPRRTKF 363 Query: 361 GTFIRRTSLDELPQFFNVLFGQMSVVGPRPERPYFVEQFRGEIPKYMVKHHVRPGITGWA 420 G F+R+TSLDELPQFFNVL G MS+VGPRPERP+FVE+F+ EIPKYM+KHHVRPGITGWA Sbjct: 364 GAFLRKTSLDELPQFFNVLKGDMSIVGPRPERPFFVEKFKKEIPKYMIKHHVRPGITGWA 423 Query: 421 QSNGLRGDTSIEERIKHDIFYIENWSLLFDIRIIFKTIRNGF--KNAY 466 Q GLRGDTSI+ERI+HD+FYIENWSL DI+II TI NG KNAY Sbjct: 424 QVCGLRGDTSIQERIEHDLFYIENWSLWLDIKIILLTITNGLVNKNAY 471 >ref|ZP_00098824.1| COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Desulfitobacterium hafniense] Length = 463 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/468 (42%), Positives = 288/468 (61%), Gaps = 7/468 (1%) Query: 1 MIRRNQRFLTQLYMVADFLVIQLAFLAAWWLKFRSGWLEYSETLPIESYAYWSFIYGGIA 60 MIR NQ+ L + ++ D ++ +A A+WL+F + E S L ESY + + Sbjct: 1 MIRENQKTLNMIQVILDLAIVVIALALAYWLRFAN--YEGSH-LKFESYVPTLVLLVPLH 57 Query: 61 VLIGIVLSLYLPKRKKRFVDEFLKIFQVHIMAVFMLLGLMFFLKEIDVSRQYLAIYMGFN 120 + +L LY +R+K E KI Q + ++ +L L++ +KEI SRQ L ++ F Sbjct: 58 FFLYYLLGLYEARRRKSLSFEVGKIIQANFLSTMILFTLLYIIKEIHYSRQVLIYFVIFT 117 Query: 121 VLSIMLYRYVLKKMLKSLREKGLNRQFVLILGAGTLGKRFYNNLVQYPELGYETIGFLDD 180 + R L+ +L ++REKG N++ VLI+G G L KR N L + LGYE +G + + Sbjct: 118 GTLTIAERMALRAILNNIREKGYNKKHVLIIGTGRLAKRLVNALQENRYLGYEILGIVGE 177 Query: 181 FHTWDDIEEQRYKPILGTVDELPGMLEMLPVDEVILALPLDAHSKYPAIIAACEKAGVRT 240 ++ + G + +L ++ +DE+ + + + + II CEK+GVRT Sbjct: 178 NTAVG--KKLAGVTVAGAISDLENIIMESKIDEIFITISTKDYDLFRNIIKICEKSGVRT 235 Query: 241 LIIPDFFDYLPARPYFDNFAGMPMINVRDIPLDMTGNKLAKRXXXXXXXXXXXXXXXPVM 300 I+PD+ ++PA+P D G+P+IN+R +PLD AKR P+ Sbjct: 236 QIVPDYARFIPAKPQMDEIEGIPLINIRHVPLDNFLKAFAKRVFDVAVSFVGLVVCLPLF 295 Query: 301 LLVALGVRLTSPGPVIFKQERVGLNRRNFMMYKFRSMKMQQEGVEDTGWSTPVDPRRTKF 360 L++ +G++L SPGP+IF QERVGLN++NFMMYKFR+MK Q D W+T D R+T+ Sbjct: 296 LIIIIGIKLDSPGPIIFSQERVGLNKKNFMMYKFRTMKEQSIEESDKEWTTENDDRKTRL 355 Query: 361 GTFIRRTSLDELPQFFNVLFGQMSVVGPRPERPYFVEQFRGEIPKYMVKHHVRPGITGWA 420 G +R+TSLDELPQ +NV G MS+VGPRPERP+FVEQF+ +IP+YMVKHHVRPGITGWA Sbjct: 356 GNLLRKTSLDELPQLWNVFKGDMSLVGPRPERPFFVEQFKEKIPRYMVKHHVRPGITGWA 415 Query: 421 QSNGLRGDTSIEERIKHDIFYIENWSLLFDIRIIFKTIRNGF--KNAY 466 Q NG RGDTSI +RI+ DI+YIENW+ +FD++I+ T+ GF +NAY Sbjct: 416 QVNGWRGDTSIRKRIECDIYYIENWTFMFDLKILVMTVFKGFVNRNAY 463 >ref|NP_712690.1| Putative colanic biosynthesis UDP-glucose lipid carrier transferase [Leptospira interrogans serovar lai str. 56601] gb|AAN49708.1| Putative colanic biosynthesis UDP-glucose lipid carrier transferase [Leptospira interrogans serovar lai str. 56601] gb|AAS70057.1| UDP-glucosyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 473 Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 174/476 (36%), Positives = 271/476 (56%), Gaps = 15/476 (3%) Query: 1 MIRRNQRFLTQLYMVADFLVIQLAFLAAWWLKFRSGWLEYSET----LPIESYAYWSFIY 56 M++ + ++ + DF + + A+ +F +L+ + T + IESY + F+ Sbjct: 3 MLKERSQTFKLIFTILDFSNALFSGILAFVFRFY--FLDENGTDRRYVDIESYIFLFFLL 60 Query: 57 GGIAVLIGIVLSLYLPKRKKRFVDEFLKIFQVHIMAVFMLLGLMFF----LKEIDVSRQY 112 V++ I + LY P+R F+DEFL I + + ++L ++FF L SR Sbjct: 61 AFFQVIVFIAIDLYHPRRGLSFIDEFLTIISGVFLNLVLVLAVLFFFRGDLGSERFSRYV 120 Query: 113 LAIYMGFNVLSIMLYRYVLKKMLKSLREKGLNRQFVLILGAGTLGKRFYNNLVQYPELGY 172 + + N+L+ + Y+ + +L+ LR+KG N + VL++G KRF + ++++ GY Sbjct: 121 VLAFAMINILTSSILHYIARIVLRILRKKGYNLRSVLVVGVSETSKRFNDAVIKHGIYGY 180 Query: 173 ETIGFLDDFHTWDDIEEQRYKPILGTVDELPGMLEMLPVDEVILALPLDAHSKYPAIIAA 232 + +GF+ +E + ++G ++++ +LE D V+ L ++ A Sbjct: 181 KILGFVQTKSAKPVSKEMK---VVGKIEKISHVLEKERPDLVVYTLEPSEGDYLKEVLDA 237 Query: 233 CEKAGVRTLIIPDFFDYLPARPYFDNFAGMPMINVRDIPLDMTGNKLAKRXXXXXXXXXX 292 C+ G+ I+P F +++ AR + G+P+I++R+IP+ + NK KR Sbjct: 238 CDHEGIDLKIVPGFQEFIKARGRVEEMEGLPVISIRNIPIRLGYNKFVKRIFDLTFSILF 297 Query: 293 XXXXXPVMLLVALGVRLTSPGPVIFKQERVGLNRRNFMMYKFRSMKMQQEGVEDTGWSTP 352 P LL+AL V+LTSPGPV + QERVGL+ + F M KFR+M +Q + +T W+ Sbjct: 298 ILFFSPFYLLMALLVKLTSPGPVFYYQERVGLDNKKFKMIKFRTMVVQAKTQSETTWTVQ 357 Query: 353 VDPRRTKFGTFIRRTSLDELPQFFNVLFGQMSVVGPRPERPYFVEQFRGEIPKYMVKHHV 412 DPR T G +R+ SLDE PQFFNVLFG MSVVGPRPERP+FVE+F+ + YM +H V Sbjct: 358 NDPRVTSVGRILRKLSLDETPQFFNVLFGDMSVVGPRPERPHFVEKFKNDHKHYMRRHAV 417 Query: 413 RPGITGWAQSNGLRGDTSIEERIKHDIFYIENWSLLFDIRIIFKTIRNGF--KNAY 466 + GITG AQ GLRGDTSIE+RI DI+YIENWS+ D++II T G KNAY Sbjct: 418 KAGITGLAQVKGLRGDTSIEDRIAADIYYIENWSIWLDLKIILLTPFKGIMDKNAY 473 >ref|ZP_00165041.1| hypothetical protein Selo123101 [Synechococcus elongatus PCC 7942] Length = 467 Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/406 (39%), Positives = 229/406 (56%), Gaps = 10/406 (2%) Query: 66 VLSLYLPKRKKRFVDEFLKIFQVHIMAVFMLLGLMFFLK-EIDVSRQYLAIYMGFNVLSI 124 + +LY R + + L++ + + + ++F L SR + + ++ S Sbjct: 67 LFNLYDSWRGRSMIPLMLRVAAAWGLTIATTVTIIFALHYGSSFSRLWFTTWAIGSLYSF 126 Query: 125 MLYRYVLKKMLKSLREKGLNRQFVLILGAGTLGKRFYNNLVQYPELGYETIGFLDDFHTW 184 L R + L+ +R KG N + +LI+GAG LG+ + L G +GFLDD Sbjct: 127 GLIRLLWVAGLQMMRHKGWNERRLLIVGAGDLGQVLTDRLAAARWTGLRVVGFLDDN--- 183 Query: 185 DDIEEQRYK--PILGTVDELPGMLEMLPVDEVILALPLDAHSKYPAIIAACEKAGVRTLI 242 ++E Q Y+ PI VD++ ++ EV LALPL A + I+ + V + Sbjct: 184 PELEGQNYRGIPITAQVDQIETWIDRFDAHEVWLALPLRAQDRVQEILHLLRHSTVTIRL 243 Query: 243 IPDFFDYLPARPYFDNFAGMPMINVRDIPLDMTGNKLAKRXXXXXXXXXXXXXXXPVMLL 302 IPD F + F G+P+I++ P+ M N+ K PVML Sbjct: 244 IPDVFSFRLINHGFTEVLGVPLIDLNASPM-MGSNRFIKAIEDKVLAGMILLLASPVMLA 302 Query: 303 VALGVRLTSPGPVIFKQERVGLNRRNFMMYKFRSMKMQQEGVEDTGWSTPVDPRRTKFGT 362 +A+G+RLTSPGP+ ++QER+G N + FMM KFRSM + E + W T G+ Sbjct: 303 IAIGIRLTSPGPIFYRQERIGWNGQPFMMLKFRSMPVNSEA-KGVQWGKAYAKPTTPLGS 361 Query: 363 FIRRTSLDELPQFFNVLFGQMSVVGPRPERPYFVEQFRGEIPKYMVKHHVRPGITGWAQS 422 F+RRTSLDELPQF NVL G+MS+VGPRPER FVEQF+ EIP YM KH V+ GITGWAQ Sbjct: 362 FLRRTSLDELPQFINVLRGEMSIVGPRPERSLFVEQFKDEIPDYMKKHMVKAGITGWAQV 421 Query: 423 NGLRGDTSIEERIKHDIFYIENWSLLFDIRIIFKTIRNGF--KNAY 466 NGLRGDT + +RI++D++YIENWSL FD++II T+ GF +NAY Sbjct: 422 NGLRGDTDLRKRIEYDLYYIENWSLAFDLQIIGMTLLKGFLSRNAY 467 >ref|ZP_00018359.1| hypothetical protein [Chloroflexus aurantiacus] Length = 419 Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 161/409 (39%), Positives = 233/409 (56%), Gaps = 12/409 (2%) Query: 59 IAVLIGIVLSLYLPKRKKRFVDEFLKIFQ------VHIMAVFMLLGLMFFLKEIDVSRQY 112 IA+++ LY KR +DE +K+ V ++ V L+G F +E+ +R+ Sbjct: 6 IALIVFTSHGLYEMKRGASRLDEAVKVLTAVSFTMVLVIFVNALIG-EFGGEEMPWTREI 64 Query: 113 LAIYMGFNVLSIMLYRYVLKKMLKSLREKGLNRQFVLILGAGTLGKRFYNNLVQYPELGY 172 L V + R++ + + LR ++ + VLI+GA G+ +N + + PELGY Sbjct: 65 LFQGWLLAVAGCLTGRFLHRTFVYVLRRFDIDTRRVLIVGAREPGRLVWNTIRRRPELGY 124 Query: 173 ETIGFLDDFHTWDDIEEQRYKPILGTVDELPGMLEMLPVDEVILALPLDAHSKYPAIIAA 232 GFL D D+ + P+LG D + ++ DEVI+AL + +IA Sbjct: 125 RVQGFLSDTVPIGDLVDG--LPVLGRTDHIRRVIRATRADEVIIALSGRSSQDLLEVIAL 182 Query: 233 CEKAGVRTLIIPDFFDYLPARPY-FDNFAGMPMINVRDIPLDMTGNKLAKRXXXXXXXXX 291 E V + PD F + + +P+++V++ LD N+ KR Sbjct: 183 AEDESVAIKVYPDTFQLITNNEVSIGDLRDLPLVSVKNAALDNPWNRALKRGLDLVVASL 242 Query: 292 XXXXXXPVMLLVALGVRLTSPGPVIFKQERVGLNRRNFMMYKFRSMKMQQEGVEDTGWST 351 PVMLL+AL +RL S GP+ F QERVGL+ + F M KFR+M+ E + W+ Sbjct: 243 VLLVAAPVMLLIALAIRLESRGPIFFLQERVGLDGQPFWMIKFRTMRPDAERF--STWTV 300 Query: 352 PVDPRRTKFGTFIRRTSLDELPQFFNVLFGQMSVVGPRPERPYFVEQFRGEIPKYMVKHH 411 DPR T+ G F+RRTSLDELPQ NVL G+MS+VGPRPE+ +VEQFR +IP+YM +H Sbjct: 301 QNDPRVTRVGRFLRRTSLDELPQLINVLIGEMSIVGPRPEQARWVEQFRQQIPRYMRRHK 360 Query: 412 VRPGITGWAQSNGLRGDTSIEERIKHDIFYIENWSLLFDIRIIFKTIRN 460 + G+TGWAQ NGLRGDTSIEER ++D++Y+ENWSLLFDI+II +TI N Sbjct: 361 EKAGLTGWAQVNGLRGDTSIEERTRYDLYYVENWSLLFDIKIILRTIIN 409 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.145 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 688,226,287 Number of extensions: 29671239 Number of successful extensions: 89578 Number of sequences better than 1.0e-05: 598 Number of HSP's gapped: 88372 Number of HSP's successfully gapped: 598 Length of query: 466 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 337 Effective length of database: 406,989,807 Effective search space: 137155564959 Effective search space used: 137155564959 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)