BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0017.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_987226.1| conserved hypothetical protein [Methanococcus m... 110 2e-23 ref|NP_457471.1| putative membrane protein [Salmonella enterica ... 93 3e-18 ref|NP_755382.1| Hypothetical protein [Escherichia coli CFT073] ... 91 2e-17 ref|NP_708689.1| orf, conserved hypothetical protein [Shigella f... 90 3e-17 ref|NP_289496.1| orf; hypothetical protein [Escherichia coli O15... 89 7e-17 >ref|NP_987226.1| conserved hypothetical protein [Methanococcus maripaludis S2] emb|CAF29662.1| conserved hypothetical protein [Methanococcus maripaludis] Length = 186 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 113/185 (61%), Gaps = 1/185 (0%) Query: 1 MNQKTLVITLGALAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXXXXX 60 M++K L +T + IAIN I G + + LK+P +FLD++GT+ + GP+ GA Sbjct: 1 MDKKVLYMTTIPVGIAINAIGGQIATFLKLP-IFLDSIGTVLSGFLLGPVGGALVGFFTN 59 Query: 61 XXXXXXSGYTAIPFALVNVIVGLVVGYASRKKGFTFSSALVSGIILGILCPAVGSVIAIG 120 + IPF++VN+++GLV GY + K G T ++++ G++L I+ P VG+ IA+ Sbjct: 60 ILLGFILDPSYIPFSIVNIVIGLVSGYVAVKHGITLKNSVIVGLVLAIIAPMVGTPIAVY 119 Query: 121 LFGGLTGGVQDVAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLPHSLIK 180 L+GGL GG D+ +G +F++AFL R+ NL+DK+LS +LVYY++K P ++ Sbjct: 120 LYGGLVGGGVDLLTAVFLHSGQDIFSSAFLARIPANLVDKLLSCILVYYIIKPFPKDILS 179 Query: 181 RPALK 185 +K Sbjct: 180 ELGVK 184 >ref|NP_457471.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_461988.1| putative inner membrane protein [Salmonella typhimurium LT2] ref|NP_806683.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] pir||AG0875 probable membrane protein STY3230 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gb|AAL21947.1| putative inner membrane protein [Salmonella typhimurium LT2] emb|CAD02903.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO70543.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 192 Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 3/175 (1%) Query: 13 LAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXXXXXXXXXXXSGYTAI 72 +AIAIN+I G ++S LK+P +FLD++GT+ A + GP G + A Sbjct: 16 IAIAINMIGGQLISMLKLP-IFLDSIGTLISAVLLGPFIGMLTGLLTNLLWGLLTDPIAA 74 Query: 73 PFALVNVIVGLVVGYASRKKGF-TFSSALVSGIILGILCPAVGSVIAIGLFGGLTGGVQD 131 FA V +++GLV G+ +R F T +VSG+++ + V + LFGG+TG D Sbjct: 75 AFAPVAMVIGLVAGWLARAGWFRTLPKVIVSGVVITLAVTLVAVPLRTALFGGVTGSGAD 134 Query: 132 VAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLPHSLIKR-PALK 185 + V W+ G +L + + +G NL+DKIL+A++V+ +++ LP + PA+ Sbjct: 135 LFVAWMHSMGQNLVESVAITVIGANLVDKILTAIIVWVLLRQLPLRTTRHFPAMS 189 >ref|NP_755382.1| Hypothetical protein [Escherichia coli CFT073] gb|AAN81955.1| Hypothetical protein [Escherichia coli CFT073] Length = 192 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 2/164 (1%) Query: 13 LAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXXXXXXXXXXXSGYTAI 72 ++IAIN+I G + S +K+P +FLD++GT+ A + GP+ G + A Sbjct: 16 ISIAINMIGGQLASMVKLP-IFLDSIGTLISAVLLGPVIGMLTGLLTNLLWGLLTDPIAA 74 Query: 73 PFALVNVIVGLVVGYASRKKGF-TFSSALVSGIILGILCPAVGSVIAIGLFGGLTGGVQD 131 FA V +++GLV G+ +R F T +VSG+I+ + V + LFGG+TG D Sbjct: 75 AFAPVAMVIGLVAGWLARAGWFRTLPKVVVSGVIITLAVTVVAVPLRTALFGGVTGSGAD 134 Query: 132 VAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLP 175 + V W+ G +L + + +G NL+DKIL+A++V+ +++ LP Sbjct: 135 LFVAWMHSMGQNLVESVAITVIGANLVDKILTAVIVWLLLRQLP 178 >ref|NP_708689.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] ref|NP_838408.1| putative inner membrane protein [Shigella flexneri 2a str. 2457T] gb|AAN44396.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gb|AAP18218.1| putative inner membrane protein [Shigella flexneri 2a str. 2457T] Length = 192 Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 2/164 (1%) Query: 13 LAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXXXXXXXXXXXSGYTAI 72 ++IAIN+I G + S +K+P +FLD++GT+ A + GP+ G + A Sbjct: 16 ISIAINMIGGQLASMVKLP-IFLDSIGTLISAVLLGPVIGMLTGLLTNLLWGLLTDPIAA 74 Query: 73 PFALVNVIVGLVVGYASRKKGF-TFSSALVSGIILGILCPAVGSVIAIGLFGGLTGGVQD 131 FA V +++GLV G+ +R F T +VSG+I+ + V + LFGG+TG D Sbjct: 75 AFAPVAMVIGLVSGWLARAGWFRTLPKVVVSGVIITLAVTVVAVPLRTALFGGVTGSGAD 134 Query: 132 VAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLP 175 + V W+ G +L + + +G NL+DKIL+A++V+ +++ LP Sbjct: 135 LFVAWMHSMGQNLVESVAITVIGANLVDKILTAVIVWLLLRQLP 178 >ref|NP_289496.1| orf; hypothetical protein [Escherichia coli O157:H7 EDL933] ref|NP_311827.1| putative transporter [Escherichia coli O157:H7] pir||H91103 probable transporter ECs3800 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) pir||C85949 hypothetical protein Z4268 [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gb|AAG58055.1| orf; hypothetical protein [Escherichia coli O157:H7 EDL933] dbj|BAB37223.1| putative transporter [Escherichia coli O157:H7] Length = 192 Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%) Query: 13 LAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXXXXXXXXXXXSGYTAI 72 ++IAIN+I G + S +K+P +FLD++GT+ A + GP+ G + A Sbjct: 16 ISIAINMIGGQLASMVKLP-IFLDSIGTLISAVLLGPVIGMLTGLLTNLLWGLLTDPIAA 74 Query: 73 PFALVNVIVGLVVGYASRKKGF-TFSSALVSGIILGILCPAVGSVIAIGLFGGLTGGVQD 131 FA V +++GLV G+ +R F T +VSG+I+ + V + LFGG+TG D Sbjct: 75 AFAPVAMVIGLVAGWLARAGWFRTLPKVVVSGVIITLAVTVVAVPLRTALFGGVTGSGAD 134 Query: 132 VAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLP 175 + V W+ G +L + + +G NL+DK L+A++V+ +++ LP Sbjct: 135 LFVAWMHSMGQNLVESVAITVIGANLVDKTLTAVIVWLLLRQLP 178 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.142 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 245,743,489 Number of extensions: 9151793 Number of successful extensions: 37948 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 37908 Number of HSP's successfully gapped: 22 Length of query: 193 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 74 Effective length of database: 434,140,797 Effective search space: 32126418978 Effective search space used: 32126418978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 122 (51.6 bits)