BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0016.p (170 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_987669.1| conserved hypothetical protein [Methanococcus m... 112 4e-24 ref|NP_246966.1| M. jannaschii predicted coding region MJ0003 [M... 103 1e-21 ref|ZP_00148662.1| hypothetical protein Mbur082401 [Methanococco... 67 2e-10 ref|NP_616899.1| conserved hypothetical protein [Methanosarcina ... 60 2e-08 ref|NP_634818.1| hypothetical protein [Methanosarcina mazei Goe1... 60 2e-08 >ref|NP_987669.1| conserved hypothetical protein [Methanococcus maripaludis S2] emb|CAF30105.1| conserved hypothetical protein [Methanococcus maripaludis] Length = 182 Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 29/161 (18%) Query: 1 VQRSKKIIVASHCVINQNAVVEGEARSPGVMKAAVDWTYEQGYGLFQLPCPEFTFLGPER 60 ++R+KKI + SHC++N N+ VEG + G++K +++ ++GYG+ Q+PCPE G +R Sbjct: 1 MKRNKKIALVSHCILNANSKVEGLSEYGGMLKDVMNYLMDEGYGIIQMPCPEMAIYGIKR 60 Query: 61 PPMTVEEYDTPEFRSHNRSILQPVVEQLKTYQDHGYSIVGGLGISGSPSCD--------- 111 E++DTP FR +R + QP++EQ++ Y +GY + +GI SPSC Sbjct: 61 WGHVKEQFDTPHFRKVSRKLFQPILEQVQDYIKNGYEVSLLIGIDKSPSCGINETCSSNE 120 Query: 112 --------------------PGKGVFMRDFLELAAENGVAI 132 P KG+FM + L++ EN +AI Sbjct: 121 WGGYSSNGNMAEKSEKLEMIPEKGIFMDEILKILNENEIAI 161 >ref|NP_246966.1| M. jannaschii predicted coding region MJ0003 [Methanococcus jannaschii] sp|Q60313|Y003_METJA Hypothetical protein MJ0003 pir||C64300 hypothetical protein MJ0003 - Methanococcus jannaschii gb|AAB97990.1| M. jannaschii predicted coding region MJ0003 [Methanococcus jannaschii] Length = 156 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 3/132 (2%) Query: 3 RSKKIIVASHCVINQNAVVEGEARSPGVMKAAVDWTYEQGYGLFQLPCPEFTFLGPERPP 62 + K+I + SH ++NQN+VV G R+ G V+ + YG+ QLPCPE +LG +R Sbjct: 2 KGKRIAIVSHRILNQNSVVNGLERAEGAFNEVVEILLKNNYGIIQLPCPELIYLGIDREG 61 Query: 63 MTVEEYDTPEFRSHNRSILQPVVEQLKTYQDHGYSIVGGLGISGSPSCD--PGKGVFMRD 120 T EEYDT E+R + +L+P+++ L+ Y+ Y + +GI S +CD +G+ M + Sbjct: 62 KTKEEYDTKEYRELCKKLLEPIIKYLQEYKKDNYKFI-LIGIENSTTCDIFKNRGILMEE 120 Query: 121 FLELAAENGVAI 132 F + + + I Sbjct: 121 FFKEVEKLNIII 132 >ref|ZP_00148662.1| hypothetical protein Mbur082401 [Methanococcoides burtonii DSM 6242] Length = 153 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 30/153 (19%) Query: 3 RSKKIIVASHCVINQNAVVEGEARSPGVMKAAVDWTYEQGYGLFQLPCPEFTFLGPERPP 62 R K+I+V HC+ N ++ ++G P VD +G + QLPCPE +LG R Sbjct: 5 RGKEILVIGHCLANVSSRLKGIKGPP-----LVDT---KGKNIVQLPCPELIYLGEARRE 56 Query: 63 MTVEEYDTPEFRSHNRSILQPVVEQLKTYQDHGYSIVGGLGISGSPSCD----------- 111 +T ++ + P +R S+ +P + ++ + GYSI LG+ SPSC Sbjct: 57 ITRDQLENPNYRRFCHSLFEPFADMIEQFYQEGYSI-KVLGVPKSPSCGAQTTTVGGPAG 115 Query: 112 ----------PGKGVFMRDFLELAAENGVAIDF 134 PG G+F + E GV + Sbjct: 116 RVEVFTHDNVPGTGIFYEEIAEELTRRGVLFEM 148 >ref|NP_616899.1| conserved hypothetical protein [Methanosarcina acetivorans str. C2A] gb|AAM05379.1| conserved hypothetical protein [Methanosarcina acetivorans str. C2A] Length = 193 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 30/151 (19%) Query: 5 KKIIVASHCVINQNAVVEGEARSPGVMKAAVDWTYEQGYGLFQLPCPEFTFLGPERPPMT 64 K+I+V HC++N A ++G + V +G + QLPCPE +LG R +T Sbjct: 47 KEILVLGHCLLNPLARLKGAKPATPV--------NPKGANIIQLPCPESMYLGMRRREIT 98 Query: 65 VEEYDTPEFRSHNRSILQPVVEQLKTYQDHGYSIVGGLGISGSPSC-------------- 110 ++ D P +R R I P+ + L+ +G + +G+ SPSC Sbjct: 99 KDQLDHPSYRRFCRKIFTPLADMLEDLAANGIKL-RIIGVPKSPSCGVYITSVGGEPGKS 157 Query: 111 -------DPGKGVFMRDFLELAAENGVAIDF 134 PG GVFM + ++ GV + Sbjct: 158 KEFHHNHTPGPGVFMEEIIKELEGRGVEFEI 188 >ref|NP_634818.1| hypothetical protein [Methanosarcina mazei Goe1] gb|AAM32490.1| hypothetical protein [Methanosarcina mazei Goe1] Length = 191 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 30/151 (19%) Query: 5 KKIIVASHCVINQNAVVEGEARSPGVMKAAVDWTYEQGYGLFQLPCPEFTFLGPERPPMT 64 K+++V HC++N A V+G V +G + QLPCPE +LG R +T Sbjct: 44 KEVVVLGHCLLNPIARVKG--------AKPVIPIDAKGANVIQLPCPESMYLGIRRREIT 95 Query: 65 VEEYDTPEFRSHNRSILQPVVEQLKTYQDHGYSIVGGLGISGSPSC---------DPGK- 114 ++ D P +R R I P + L+ +G SI +G+ SPSC +PGK Sbjct: 96 KDQLDHPAYRRFCREIFTPFADMLEDLAINGVSI-RIIGVPKSPSCGVRITSVGGEPGKS 154 Query: 115 -----------GVFMRDFLELAAENGVAIDF 134 GVFM + ++ V+ + Sbjct: 155 KEFHHIHSQEPGVFMEEIMKELERRRVSFEI 185 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.136 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 289,272,499 Number of extensions: 12517014 Number of successful extensions: 23829 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 23828 Number of HSP's successfully gapped: 5 Length of query: 170 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 53 Effective length of database: 439,570,995 Effective search space: 23297262735 Effective search space used: 23297262735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)