BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0015.p (280 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00180213.1| hypothetical protein Mther190001 [Moorella th... 231 1e-59 ref|NP_623801.1| ABC-type cobalt transport system, ATPase compon... 223 4e-57 ref|NP_830039.1| Cobalt transport ATP-binding protein cbiO [Baci... 218 1e-55 ref|ZP_00182627.1| hypothetical protein Exigu206801 [Exiguobacte... 218 1e-55 ref|NP_349702.1| ABC-type transporter, ATPase component (cobalt ... 214 1e-54 >ref|ZP_00180213.1| hypothetical protein Mther190001 [Moorella thermoacetica ATCC 39073] Length = 276 Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 128/261 (49%), Positives = 164/261 (62%), Gaps = 8/261 (3%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 MI IQ T+ Y PAL K+ L I+PGEF+A+ G NGSGKS+L+RLLNG+ Sbjct: 1 MIAIQGATYIY--------PGSTVPALEKIDLAIEPGEFLAITGPNGSGKSTLARLLNGL 52 Query: 61 ELPTEGTVTVDGRRTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQQ 120 P +G V VDG T + + IRR V +VFQ+P+NQ V TV ED+AFGL N+G P Sbjct: 53 LRPRQGRVLVDGMDTGDDTALITIRRRVGMVFQDPDNQLVAATVAEDVAFGLENLGLPPA 112 Query: 121 EIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPVA 180 EI R+ AL+ VGLE RP LSGG+KQ+LALA VLA+ PRYL+LDEAT+MLDPVA Sbjct: 113 EIEKRVDLALRSVGLEDLAARPPHLLSGGQKQRLALAGVLAMEPRYLVLDEATAMLDPVA 172 Query: 181 RRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLLH 240 R +E + +RQ +I ITH +EE + ADR ++ + GRI G P L ++L Sbjct: 173 REEILEQVLRLRQEQGIAIILITHLMEEAVRADRMLIMKSGRIFWQGSPRELSYQERILA 232 Query: 241 DCGLELPYYYKLAELLRRSGI 261 GL LP LA+ LR+ GI Sbjct: 233 AAGLRLPAVIALAKSLRQGGI 253 >ref|NP_623801.1| ABC-type cobalt transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM25405.1| ABC-type cobalt transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 293 Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 109/279 (39%), Positives = 178/279 (63%), Gaps = 6/279 (2%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 +IR Q+V+F Y+E G + P L ++L + G+F+ ++G NGSGKS+L++ N + Sbjct: 20 IIRAQNVSFCYSE-----GESKSPPVLKDINLQFEKGQFIGIIGHNGSGKSTLAKHFNAL 74 Query: 61 ELPTEGTVTVDGRRTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQQ 120 LPT+G V V T + + +IR+ +VFQNP+NQ V V ED+AFG N+G P + Sbjct: 75 LLPTKGNVYVKDMDTKDAKHLWDIRQTAGLVFQNPDNQIVAAIVEEDVAFGPENLGIPPE 134 Query: 121 EIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPVA 180 EIR R+ +AL+ VG+ ++ P LSGG+KQ++A+A ++A+ P ++LDE T+MLDP+ Sbjct: 135 EIRKRVEYALKAVGMWEYKDFPPHMLSGGQKQRVAIAGIIAMKPECIVLDEPTAMLDPIG 194 Query: 181 RRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLLH 240 RR + T+ ++ + T+I ITH +EEV+ ADR ++ +G++V G P + K+ ++L Sbjct: 195 RREVISTIKKLNKEEGITVILITHFMEEVVDADRVIVMDDGKVVLDGTPKEVFKEVEVLK 254 Query: 241 DCGLELPYYYKLAELLRRSGIPAPA-TLSEQELRGLLCR 278 GL++P +LA LR+ GI P+ L+ +E+ +CR Sbjct: 255 KIGLDVPQVTELAHQLRKEGIDIPSDILTIEEMVEFICR 293 >ref|NP_830039.1| Cobalt transport ATP-binding protein cbiO [Bacillus cereus ATCC 14579] gb|AAP07240.1| Cobalt transport ATP-binding protein cbiO [Bacillus cereus ATCC 14579] Length = 280 Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/260 (43%), Positives = 171/260 (65%), Gaps = 8/260 (3%) Query: 2 IRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGIE 61 +RI++++F Y P A+ AL VS + GE+V+++G+NGSGKS+L++LLNG+ Sbjct: 6 LRIENISFQY--PGAAT------YALKDVSFSLYEGEWVSIIGQNGSGKSTLAKLLNGLF 57 Query: 62 LPTEGTVTVDGRRTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQQE 121 LP GT+TV+ V ++R+ + +VFQNP+NQ VG TV +D+ FGL NIG P+++ Sbjct: 58 LPEAGTITVNDTMVLSEETVWDVRKQIGMVFQNPDNQFVGTTVQDDVVFGLENIGMPREQ 117 Query: 122 IRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPVAR 181 + R+ ALQLV +E LSGG+KQ++A+A VLAL P LILDEATSMLDP R Sbjct: 118 MIERLEQALQLVRMEDFLNDEPHSLSGGQKQRVAIAGVLALQPSILILDEATSMLDPQGR 177 Query: 182 RRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLLHD 241 R VET+ ++ + T++ ITH LEE +DR ++ +G I+ G P + K + +L + Sbjct: 178 REVVETVRQLVTQKGITVLSITHDLEEAAQSDRVIILNKGEILEEGTPEKIFKSSHMLQE 237 Query: 242 CGLELPYYYKLAELLRRSGI 261 GL++P+ K+AELL+R+ I Sbjct: 238 IGLDVPFSVKIAELLKRNEI 257 >ref|ZP_00182627.1| hypothetical protein Exigu206801 [Exiguobacterium sp. 255-15] Length = 276 Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 122/281 (43%), Positives = 180/281 (64%), Gaps = 10/281 (3%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 +I ++ VT+ Y E ++ PAL VSL I E+VA++G NGSGKS+L++L NG+ Sbjct: 4 LIELEQVTYRYPEQEQ--------PALRNVSLSIHSQEWVAIVGHNGSGKSTLTKLFNGL 55 Query: 61 ELPTEGTVTVDGR-RTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQ 119 LP EGTVTV+ +A P ++ E+RRA+ IVFQNP+NQ VG TV +D+AF L N G P+ Sbjct: 56 LLPEEGTVTVNETFSSAVPEQLWEMRRAIGIVFQNPDNQFVGTTVRDDVAFALENWGVPR 115 Query: 120 QEIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPV 179 +E+ RI +L VGL +R +LSGG+KQ++A+AS LA+ P L+LDEATSMLDP+ Sbjct: 116 EEMVRRIDDSLARVGLTDFVDREPHQLSGGQKQRVAIASALAMRPDVLVLDEATSMLDPI 175 Query: 180 ARRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLL 239 AR + T+ E+ ++ P ++ ITH L+EV+ A R ++ G+IV G P + + L Sbjct: 176 ARTEVMSTVQELYEQHPMAVVAITHELDEVLRASRVIVMDAGQIVLEGTPQEVFAQSAFL 235 Query: 240 HDCGLELPYYYKLAELLRRSGIPAPAT-LSEQELRGLLCRS 279 GL++P+ ++ E L G+ T L E++L LC+S Sbjct: 236 EQIGLDVPFVVRVQEQLSVRGLTYEDTILDERDLVNRLCQS 276 >ref|NP_349702.1| ABC-type transporter, ATPase component (cobalt transporters subfamily) [Clostridium acetobutylicum] pir||G97281 ABC-type transporter, ATPase component (cobalt transporters subfamily) CAC3102 [imported] - Clostridium acetobutylicum gb|AAK81042.1| ABC-type transporter, ATPase component (cobalt transporters subfamily) [Clostridium acetobutylicum] Length = 281 Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/279 (39%), Positives = 172/279 (61%), Gaps = 5/279 (1%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 M+ ++V + Y DE+ A++ V+L++ GEF+ +LGRNGSGKS+L++ LN + Sbjct: 5 MVECKNVVYQYKNEDESKNTT----AVNDVTLEVNEGEFLVILGRNGSGKSTLAKHLNAL 60 Query: 61 ELPTEGTVTVDGRRTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQQ 120 +PT+G V V+G T+ +V IR +VFQNP+NQ V V ED+AFG N+G Sbjct: 61 LVPTDGKVIVEGLDTSNEEDVWTIRSKTGMVFQNPDNQIVATIVEEDVAFGPENLGVKPS 120 Query: 121 EIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPVA 180 EIR R+ AL+ VG+ + LSGG+KQ++A+A VLA+ P+ ++ DE+T+MLDP Sbjct: 121 EIRERVDNALKSVGMYEYRKHEPHLLSGGQKQRVAIAGVLAMHPKCIVFDESTAMLDPKG 180 Query: 181 RRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLLH 240 R V T+ ++ + T+I ITH++EE + ADR V+ +G+++ SG P + KD + + Sbjct: 181 REEVVNTIMDLNKNSHITIILITHYMEEAINADRIVVMDKGKVIKSGVPREVFKDVKTMK 240 Query: 241 DCGLELPYYYKLAELLRRSGIPAP-ATLSEQELRGLLCR 278 + GL++P +LA L++ GI L+ E+ LCR Sbjct: 241 EIGLDVPQMTELAYELKKEGINVKDDILTIDEMVNELCR 279 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 405,106,201 Number of extensions: 16546220 Number of successful extensions: 104992 Number of sequences better than 1.0e-05: 18294 Number of HSP's gapped: 85923 Number of HSP's successfully gapped: 19612 Length of query: 280 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 156 Effective length of database: 420,565,302 Effective search space: 65608187112 Effective search space used: 65608187112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)