BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0014.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_563289.1| probable ABC transporter [Clostridium perfringe... 192 4e-48 ref|NP_349701.1| ABC-type transporter, ATPase component (cobalt ... 183 3e-45 ref|ZP_00061915.1| COG1122: ABC-type cobalt transport system, AT... 182 5e-45 ref|NP_783095.1| cobalt transport ATP-binding protein [Clostridi... 179 4e-44 ref|NP_228037.1| ABC transporter, ATP-binding protein [Thermotog... 163 3e-39 >ref|NP_563289.1| probable ABC transporter [Clostridium perfringens] dbj|BAB82079.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 285 Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 4/206 (1%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFD- 60 L + ++ GE +A+ G +GSGKSTF+Q L G LSP+ GN+ +DG + +++ + D Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIA-DKKVKLSDI 81 Query: 61 --RIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRS 118 ++G +FQYPE+QLF T+ +DI +G R+ +S E +V+K+M+ V LDY +KD+S Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIEYGPRNLGISEEEISKRVKKSMEMVGLDYETYKDKS 141 Query: 119 PFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWV 178 PF+LSGG+KRRVAIAGV+ +EP+VLILDEPTAGLD + R + + +++E G+TII V Sbjct: 142 PFDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPKGREDILAQIRLLHKEYGMTIIMV 201 Query: 179 SHQLEEILEHAARMIALMAGQXXXXG 204 SH +E++ + A R+I + +G+ G Sbjct: 202 SHSMEDVAKIADRVIVMNSGEIVLDG 227 >ref|NP_349701.1| ABC-type transporter, ATPase component (cobalt transporters subfamily) [Clostridium acetobutylicum] pir||F97281 ABC-type transporter, ATPase component (cobalt transporters subfamily) CAC3101 [imported] - Clostridium acetobutylicum gb|AAK81041.1| ABC-type transporter, ATPase component (cobalt transporters subfamily) [Clostridium acetobutylicum] Length = 286 Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 135/207 (65%), Gaps = 6/207 (2%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFD- 60 L + +T++ GE G +GSGKST +Q + G L P+ G++++D D + + + + Sbjct: 23 LDNVNITIEDGEFAVFIGHTGSGKSTLIQQINGLLKPTSGSIFIDDVD--ITDKSVKLND 80 Query: 61 ---RIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDR 117 ++G +FQYPE+QLF T+ +DIAFG R+ LS E +V+KAM+ V L+Y FKD+ Sbjct: 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPRNMGLSEEEVSTRVKKAMKMVGLEYNDFKDK 140 Query: 118 SPFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIW 177 SPFELSGG+KRRVAIAGVV +EP+VLILDEPTAGLD + R + + + +E +TII Sbjct: 141 SPFELSGGQKRRVAIAGVVAMEPKVLILDEPTAGLDPKGRDDILYEIKKLQKEYKMTIIL 200 Query: 178 VSHQLEEILEHAARMIALMAGQXXXXG 204 VSH +E++ + A ++ + + G Sbjct: 201 VSHSMEDVAKVADKIFVMYDSRCILSG 227 >ref|ZP_00061915.1| COG1122: ABC-type cobalt transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 318 Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 92/210 (43%), Positives = 139/210 (66%), Gaps = 5/210 (2%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFDR 61 L + L+++ GE + + G +GSGKST +Q G L P+ G++Y++G + R E + Sbjct: 23 LDNINLSIETGEFVGIIGHTGSGKSTLVQHFNGLLKPTSGSVYINGEELTGQRAKELKKQ 82 Query: 62 IGFIFQYPEHQLFSTTVYEDIAFGL-RSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRSPF 120 +G +FQYPEHQLF TVY+DIAFGL R + EI KVRK ++ V L D+SPF Sbjct: 83 VGIVFQYPEHQLFEETVYKDIAFGLVRRGEEKDEIYR-KVRKTIRLVGLSE-DILDKSPF 140 Query: 121 ELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWVSH 180 ELSGG+KRRVA+AG++VLEP +L+LDEP AGLD + R +F+L+ +++ +T+I VSH Sbjct: 141 ELSGGQKRRVAMAGILVLEPSILVLDEPAAGLDPKGREEIFELVSNLHKNNKMTVILVSH 200 Query: 181 QLEEILEHAARMIALMAGQXXXXGWRPLRA 210 +E++ ++ R+I + G+ G P+R+ Sbjct: 201 SMEDVAKYVQRVIVMNQGRIEMCG--PVRS 228 >ref|NP_783095.1| cobalt transport ATP-binding protein [Clostridium tetani E88] gb|AAO37032.1| cobalt transport ATP-binding protein [Clostridium tetani E88] Length = 288 Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 91/202 (45%), Positives = 133/202 (65%), Gaps = 2/202 (0%) Query: 5 LQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLN--RQPEQFDRI 62 + L + GE +A+ G +GSGKST +Q + G L P G + +D D + E ++ Sbjct: 26 VNLEIKNGEFIALIGHTGSGKSTLIQHINGLLKPHSGRIIIDDIDITKKEVKMSEIRKKV 85 Query: 63 GFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRSPFEL 122 G +FQYPE+QLF T+ +DIAFG ++ LS E ++++AM V LDY K++D+SPFEL Sbjct: 86 GLVFQYPEYQLFEETIEKDIAFGPKNLNLSEEEINKRIKRAMNIVGLDYEKYRDKSPFEL 145 Query: 123 SGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWVSHQL 182 SGG+KRRVAIAGVV +EPEVLILDEPTAGLD + R + + +++E +TII VSH + Sbjct: 146 SGGQKRRVAIAGVVAMEPEVLILDEPTAGLDPKGRDEILGEIKDLHKEYNMTIILVSHSM 205 Query: 183 EEILEHAARMIALMAGQXXXXG 204 E++ + A R++ + G+ G Sbjct: 206 EDVAKLATRVLVMHKGKCILDG 227 >ref|NP_228037.1| ABC transporter, ATP-binding protein [Thermotoga maritima] pir||A72401 ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8) gb|AAD35314.1| ABC transporter, ATP-binding protein [Thermotoga maritima] Length = 266 Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 127/206 (61%), Gaps = 7/206 (3%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFDR 61 L + L +++GE L VAG +GSGKST LQ++ G + P+ G++ DG + E Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYEIRRN 79 Query: 62 IGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAK-VRKAMQAVQLDYGKFKDRSPF 120 IG FQYPE Q F+ V++++AF +++ P+ V+KAM+ V LD+ FKDR PF Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKN--FYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF 137 Query: 121 ELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWVSH 180 LSGGEKRRVAIA V+V EP++LILDEP GLD + +T L ++ + G T+I +SH Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISH 196 Query: 181 QLEEILEHAARMIALMAGQXXXXGWR 206 +E ++ H R++ L G+ G R Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTR 222 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 304,827,177 Number of extensions: 12142731 Number of successful extensions: 94803 Number of sequences better than 1.0e-05: 20373 Number of HSP's gapped: 73985 Number of HSP's successfully gapped: 21825 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)