BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0013.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_466122.1| highly similar to B. subtilis YbaF protein [Lis... 119 8e-26 ref|NP_563288.1| conserved hypothetical protein [Clostridium per... 118 1e-25 ref|NP_472077.1| highly similar to B. subtilis YbaF protein [Lis... 117 2e-25 ref|NP_814036.1| cobalt transport family protein [Enterococcus f... 117 2e-25 ref|NP_623799.1| ABC-type cobalt transport system, permease comp... 117 2e-25 >ref|NP_466122.1| highly similar to B. subtilis YbaF protein [Listeria monocytogenes EGD-e] pir||AG1399 B. subtilis YbaF protein homolog lmo2599 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00677.1| lmo2599 [Listeria monocytogenes] Length = 265 Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 107/183 (58%), Gaps = 3/183 (1%) Query: 54 TMIYQAILLSEPADTLIQWGPLQFSTRGLVNGMMMCEQIAGIVXXXXXXVRTTSPIVLAE 113 T++ Q + ++ L+ G LQ +T GL NG MM + I+ TTSPI L + Sbjct: 80 TLLLQ-VFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTD 138 Query: 114 GXXXXXXXXXXWRFPVHEAVMMFSIALRFLPILVEEFDKIRKAQLARGGGFHRKGLSSRF 173 G PVHE +M SI+LRF+P L++E +KI KAQ ARG F S R Sbjct: 139 GLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRI 198 Query: 174 GGVLPMLMPLFVMSILRAKDLAVAMESRCYQGEEGRTPIRIYQFKLSD-YAVFSFAVCN- 231 ++P+L+PLF+ + RA+DLA+AME+R Y+G +GRT R+ +++ +D + + S AV + Sbjct: 199 KAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTFLLISLAVLSG 258 Query: 232 LLF 234 LLF Sbjct: 259 LLF 261 >ref|NP_563288.1| conserved hypothetical protein [Clostridium perfringens] dbj|BAB82078.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 268 Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 91/163 (55%), Gaps = 1/163 (0%) Query: 67 DTLI-QWGPLQFSTRGLVNGMMMCEQIAGIVXXXXXXVRTTSPIVLAEGXXXXXXXXXXW 125 DTLI W L G+ + M ++ ++ TTSPI L +G Sbjct: 93 DTLIWHWKFLYIYKEGIRTAIFMALRLILLIMGTSVLTLTTSPIELTDGIESLLKPFKKI 152 Query: 126 RFPVHEAVMMFSIALRFLPILVEEFDKIRKAQLARGGGFHRKGLSSRFGGVLPMLMPLFV 185 P HE MM +IALRF+P L++E DKI KAQ ARG F + + ++P+L+PLF+ Sbjct: 153 GVPAHELAMMMTIALRFIPTLIDETDKIMKAQKARGADFESGNIIQKAKSLIPLLIPLFI 212 Query: 186 MSILRAKDLAVAMESRCYQGEEGRTPIRIYQFKLSDYAVFSFA 228 S RA +LA+AME+RCY+G +GRT ++I ++ +D+ F A Sbjct: 213 SSFRRADELAMAMEARCYRGGDGRTRMKILKYSKNDFISFGMA 255 >ref|NP_472077.1| highly similar to B. subtilis YbaF protein [Listeria innocua] pir||AF1775 B. subtilis YbaF protein homolog lin2748 [imported] - Listeria innocua (strain Clip11262) emb|CAC97974.1| lin2748 [Listeria innocua] Length = 265 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 106/183 (57%), Gaps = 3/183 (1%) Query: 54 TMIYQAILLSEPADTLIQWGPLQFSTRGLVNGMMMCEQIAGIVXXXXXXVRTTSPIVLAE 113 T++ Q + ++ L+ G LQ +T GL NG MM + I+ TTSPI L + Sbjct: 80 TLLLQ-VFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTD 138 Query: 114 GXXXXXXXXXXWRFPVHEAVMMFSIALRFLPILVEEFDKIRKAQLARGGGFHRKGLSSRF 173 G PVHE +M SI+LRF+P L++E +KI KAQ ARG F S R Sbjct: 139 GLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRI 198 Query: 174 GGVLPMLMPLFVMSILRAKDLAVAMESRCYQGEEGRTPIRIYQFKLSDYAVF-SFAVCN- 231 ++P+L+PLF+ + RA+DLA+AME+R Y+G +GRT R+ +++ +D + S AV + Sbjct: 199 KAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTCLLISLAVLSG 258 Query: 232 LLF 234 LLF Sbjct: 259 LLF 261 >ref|NP_814036.1| cobalt transport family protein [Enterococcus faecalis V583] gb|AAO80107.1| cobalt transport family protein [Enterococcus faecalis V583] Length = 265 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 1/173 (0%) Query: 61 LLSEPADTLIQWGPLQFSTRGLVNGMMMCEQIAGIVXXXXXXVRTTSPIVLAEGXXXXXX 120 L ++ + QWG + + G+ NG+ + + I+ TT+P+ L++ Sbjct: 86 LFTQGGEVYFQWGIISITQFGVTNGLFIFCRFVLIIFMSTLLTLTTAPLELSDAIEYLLR 145 Query: 121 XXXXWRFPVHEAVMMFSIALRFLPILVEEFDKIRKAQLARGGGFHRKGLSSRFGGVLPML 180 +FPVHE +M SIALRF+P L++E +KI AQ ARG F L + ++P+L Sbjct: 146 PLHVVKFPVHEVSLMLSIALRFVPTLMDETEKIMNAQRARGVDFGEGNLLQKMKAIVPLL 205 Query: 181 MPLFVMSILRAKDLAVAMESRCYQGEEGRTPIRIYQFKLSDYAV-FSFAVCNL 232 +PLFV S RA+DLA AME+R YQG EGRT RI + L D V F F + + Sbjct: 206 IPLFVSSFNRAEDLATAMEARGYQGGEGRTKYRILHWHLRDTIVMFGFVLLTI 258 >ref|NP_623799.1| ABC-type cobalt transport system, permease component CbiQ and related transporters [Thermoanaerobacter tengcongensis] gb|AAM25403.1| ABC-type cobalt transport system, permease component CbiQ and related transporters [Thermoanaerobacter tengcongensis] Length = 268 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 88/151 (58%) Query: 73 GPLQFSTRGLVNGMMMCEQIAGIVXXXXXXVRTTSPIVLAEGXXXXXXXXXXWRFPVHEA 132 GPL+ ++ GL + M ++ ++ TTSPI L +G P HE Sbjct: 98 GPLKITSAGLKFAVFMGLRLIFLIIGTSLLTLTTSPISLTDGIEHILKPFSKIGVPAHEL 157 Query: 133 VMMFSIALRFLPILVEEFDKIRKAQLARGGGFHRKGLSSRFGGVLPMLMPLFVMSILRAK 192 MM +IALRF+P L+EE +KI KAQ+ARG F + +R G++P+L+PLF+ + RA Sbjct: 158 AMMMTIALRFIPTLIEEAEKIMKAQMARGADFESGNIVNRARGLVPLLVPLFISAFRRAD 217 Query: 193 DLAVAMESRCYQGEEGRTPIRIYQFKLSDYA 223 +LA+AMESRCY+G RT ++ + DYA Sbjct: 218 ELAIAMESRCYRGGHNRTRMKKLEVHTRDYA 248 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 241,800,744 Number of extensions: 7424017 Number of successful extensions: 14019 Number of sequences better than 1.0e-05: 64 Number of HSP's gapped: 14048 Number of HSP's successfully gapped: 64 Length of query: 238 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 116 Effective length of database: 425,995,500 Effective search space: 49415478000 Effective search space used: 49415478000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 124 (52.4 bits)