BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0003.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_830629.1| outer surface protein [Bacillus cereus ATCC 145... 283 6e-75 ref|NP_977238.1| conserved hypothetical protein [Bacillus cereus... 279 6e-74 ref|NP_843342.1| conserved hypothetical protein [Bacillus anthra... 273 5e-72 ref|NP_654771.1| hypothetical protein predicted by GeneMark [Bac... 272 7e-72 ref|NP_816085.1| conserved hypothetical protein [Enterococcus fa... 251 1e-65 >ref|NP_830629.1| outer surface protein [Bacillus cereus ATCC 14579] gb|AAP07830.1| outer surface protein [Bacillus cereus ATCC 14579] Length = 357 Score = 283 bits (723), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 146/318 (45%), Positives = 197/318 (61%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E+L+ + NGF SIFTSL I +G+ A H M MVDV P++ H L Sbjct: 18 EWLKVAKENGFTSIFTSLHIPEDDPNTYKELIQILGKQALAHEMELMVDVFPKSLHHLGL 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L D G+TGLR+D G+ EIA ++H+ +VALNASTI + F L + + Sbjct: 78 TYENVEELLDWGITGLRMDYGIAPKEIASVSHKMKVALNASTITKPFWKELIAEHIRVEN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN++LQ G+ AFIPGD + RGPL+EGLP+LEKHR+ Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNQYLQECGIKTMAFIPGDAEKRGPLYEGLPTLEKHRN 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ+C VD VLIGD+S S +MQ+ + + G + L + + V E Sbjct: 198 MRPLEAYLELVQDCGVDKVLIGDISASLESMQEVASASRGIIPLRYKSFITDKEVLKVVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R R + P HT+ R G++TIDN+ Y RY GE Q+ Sbjct: 258 QVHKNRLDPARDVIRSVESREGNRVVLQPMHTIVRKKGSITIDNELYGRYAGEMQVATHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LP DE+VNV+G V + ++ Sbjct: 318 LPVDEKVNVVGIVVEENV 335 >ref|NP_977238.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39846.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 354 Score = 279 bits (714), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 143/318 (44%), Positives = 200/318 (62%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E+L+ + NGF+SIFTSL I +G+ A ++ M MVDVSP++ H + Sbjct: 18 EWLKVAKENGFSSIFTSLHIPEDDPGTYKELIQILGKQALENEMELMVDVSPKSLHHLEM 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L + G+TGLR+D G+ EIA ++H+ +VALNASTI + L ++ + Sbjct: 78 TYENVEELVEWGITGLRMDYGITPKEIARVSHKMKVALNASTITDSLWKELITEKIRVEN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN +L G+ AFIPGDG+ RGPL+EGLP+LEKHR+ Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNEYLHECGIKTMAFIPGDGEKRGPLYEGLPTLEKHRN 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ C VD VLIGD+S S ++Q+ + + G + L + + + E Sbjct: 198 MRPLEAYLELVQACGVDKVLIGDISGSVESVQEIASASRGIIPLRYKSFITDKEVLKMVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R + + P HT+ R G++TIDN+ Y RY GE Q+ + Sbjct: 258 QVHTNRLDPARDVIRSVESREEHKVILQPMHTIARKKGSITIDNELYGRYAGEMQVAIHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LPADE+VNV+G V + DI Sbjct: 318 LPADEKVNVVGMVVEEDI 335 >ref|NP_843342.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP24828.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 354 Score = 273 bits (697), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 142/318 (44%), Positives = 197/318 (61%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E+L+ + NGF SIFTSL I +G+ A ++ M MVDVS ++ H + Sbjct: 18 EWLKVAKKNGFLSIFTSLHIPEDDPNTYKELIQILGKQALENEMELMVDVSQKSLHHLGM 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L + G+TGLR+D G+ EIA ++H+ +VALNASTI +F L + + Sbjct: 78 TYENVEELVEWGITGLRMDYGITPKEIARVSHKMKVALNASTITDSFWKELLSENIRVKN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN +L G+ AFIPGDG+ RGPL+EGLP+LEKHR+ Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNEYLHECGIKTMAFIPGDGEKRGPLYEGLPTLEKHRY 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ C VD VLIGD+S ++Q+ + + G + L +EK + E Sbjct: 198 MRPLEAYLELVQGCGVDKVLIGDISGRVESVQEIASASRGIIPLRYEPLIEKSEVLKMVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R + + P + + R G++TIDN+ Y RY GE Q+ + Sbjct: 258 QVHTNRLDPARDVIRSVESREEHKVILQPMNAIVRKKGSITIDNELYGRYAGEMQVAIHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LPADE+VNV+G V + DI Sbjct: 318 LPADEKVNVVGMVVEEDI 335 >ref|NP_654771.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 350 Score = 272 bits (696), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 143/318 (44%), Positives = 197/318 (61%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E L+ + NGF SIFTSL I +G+ A ++ M MVDVS ++ H + Sbjct: 18 EXLKVAKKNGFLSIFTSLHIPEDDPNTYKEXIQILGKQALENEMELMVDVSQKSLHHLGM 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L + G+TGLR+D G+ EIA ++H+ +VALNASTI +F L + + Sbjct: 78 TYENVEELVEWGITGLRMDYGITPKEIARVSHKMKVALNASTITDSFWKELLSENIRVKN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN +L G+ AFIPGDG+ RGPL+EGLP+LEKHR+ Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNEYLHECGIKTMAFIPGDGEKRGPLYEGLPTLEKHRY 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ C VD VLIGD+S ++Q+ + + G + L +EK + E Sbjct: 198 MRPLEAYLELVQGCGVDKVLIGDISGRVESVQEIASASRGIIPLRYEPLIEKSEVLKMVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R + + P + + R G++TIDN+ Y RY GE Q+ + Sbjct: 258 QVHTNRLDPARDVIRSVESREEHKVILQPMNAIVRKKGSITIDNELYGRYAGEMQVAIHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LPADE+VNV+G V + DI Sbjct: 318 LPADEKVNVVGMVVEEDI 335 >ref|NP_816085.1| conserved hypothetical protein [Enterococcus faecalis V583] gb|AAO82155.1| conserved hypothetical protein [Enterococcus faecalis V583] Length = 369 Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 139/321 (43%), Positives = 189/321 (58%), Gaps = 14/321 (4%) Query: 3 YLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEH--FS 60 Y++ M+ GF+ IFTSL I T +G A+ M MVD+S + FS Sbjct: 19 YIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFS 78 Query: 61 LQQLK---DSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFASL 117 +L+ + GVTGLR+D G+ I ++A +H+ + LNASTI + L+ QA+F+ L Sbjct: 79 FDELEPLIELGVTGLRMDYGITIEQMAHASHKIDIGLNASTITLEEVAELKAHQADFSRL 138 Query: 118 EAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRHL 177 EAWHNYYPRPETG+ T F +NRWL+ GL V F+PGDG RGP+ GLP+LEKHR Sbjct: 139 EAWHNYYPRPETGIGTTFFNEKNRWLKELGLQVFTFVPGDGQTRGPIFAGLPTLEKHRGQ 198 Query: 178 SPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNE-GAVLLGVEKQRPSHVWE--AV 234 +PFA + L+ + +VD V IGD ++S TM QF +++ LL V ++ Sbjct: 199 NPFAAAVGLMADPYVDAVYIGDPTISERTMAQFGYYHQTNQFLLEVAPSESRYLKRILGT 258 Query: 235 HHNRPDIARDVIRSEEAR--HHFR----GSILPEHTVERPAGALTIDNDKYLRYRGEFQI 288 H NR D ARDV+RSE +R FR +I E T RP G +TIDN+KY RY GE Q+ Sbjct: 259 HTNRLDAARDVLRSELSRTSEMFRKDEIATIESEQTEARPVGTVTIDNEKYGRYMGEIQV 318 Query: 289 VLQPLPADERVNVIGYVAQRD 309 L LP DE+VN I + ++D Sbjct: 319 TLVDLPKDEKVNTITRIIEKD 339 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 467,111,882 Number of extensions: 18999283 Number of successful extensions: 34960 Number of sequences better than 1.0e-05: 42 Number of HSP's gapped: 34859 Number of HSP's successfully gapped: 42 Length of query: 333 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 207 Effective length of database: 415,135,104 Effective search space: 85932966528 Effective search space used: 85932966528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)