BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0553.0007.p (136 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349241.1| Ferric uptake regulator (FUR family), YGAG B.su... 98 5e-20 ref|NP_623357.1| Fe2+/Zn2+ uptake regulation proteins [Thermoana... 96 2e-19 ref|NP_782900.1| putative Zinc uptake regulation protein [Clostr... 96 3e-19 ref|NP_465208.1| similar to transcription regulators (Fur family... 90 1e-17 ref|NP_765100.1| transcription regulator Fur family-like protein... 90 1e-17 >ref|NP_349241.1| Ferric uptake regulator (FUR family), YGAG B.subtilis ortholog [Clostridium acetobutylicum] pir||B97224 ferric uptake regulator (FUR family), YGAG B. subtilis ortholog [imported] - Clostridium acetobutylicum gb|AAK80581.1| Ferric uptake regulator (FUR family), YGAG B.subtilis ortholog [Clostridium acetobutylicum] Length = 138 Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 71/132 (53%) Query: 1 MIKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQM 60 + K K L LT QR AVY ++S+H+HP+A + + ++ TVY +L+ L++ + Sbjct: 7 IFKEKKLKLTPQRIAVYKYLKSTHEHPSAETIYKAIQSDYPTMSLATVYKALKTLAEVHL 66 Query: 61 IRELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVV 120 I+EL +GE RYDA H HI C CG VD++M VS T Y + + Sbjct: 67 IQELNVGEGNFRYDANSSSHPHIQCLSCGKVDDIMGITFDNLNKDVSSHTDYDVISNKLY 126 Query: 121 FGGVCPNCRSKG 132 F G+C +C+ K Sbjct: 127 FYGICKDCKDKA 138 >ref|NP_623357.1| Fe2+/Zn2+ uptake regulation proteins [Thermoanaerobacter tengcongensis] gb|AAM24961.1| Fe2+/Zn2+ uptake regulation proteins [Thermoanaerobacter tengcongensis] Length = 140 Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 76/131 (58%) Query: 1 MIKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQM 60 ++K K L +T QR A+ + + +++HPTA + +LV ++ TVY +L L + + Sbjct: 7 LLKQKGLKVTPQRLAILNFLMHTNEHPTAETIYKKLVSDFPTMSLATVYKTLEVLKNTGL 66 Query: 61 IRELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVV 120 I+EL +GE + RYDA+ H HI+C CG V+++ + ++ ++V + T Y + + Sbjct: 67 IQELNVGEGSFRYDAKTTPHPHIVCLGCGKVEDLDESIFKDLLEEVKKHTDYKVVGQKLY 126 Query: 121 FGGVCPNCRSK 131 F G CP C+ K Sbjct: 127 FYGYCPACQKK 137 >ref|NP_782900.1| putative Zinc uptake regulation protein [Clostridium tetani E88] gb|AAO36837.1| putative Zinc uptake regulation protein [Clostridium tetani E88] Length = 140 Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 74/133 (55%) Query: 1 MIKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQM 60 + K K L LT QR AVY ++S+++HP+A + L + ++ TVY +L+ L + + Sbjct: 7 IFKEKKLKLTPQRIAVYKYLKSTNEHPSAETIYKSLQPEYPTMSLATVYKTLKTLVEVDL 66 Query: 61 IRELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVV 120 I+E+ +GE RYDA+++ H HI C CG VD++ + D++ T Y + V Sbjct: 67 IQEINVGEGNFRYDAKMNPHSHIQCLSCGKVDDINNINFESLNDKIKSYTDYDVLSNQVY 126 Query: 121 FGGVCPNCRSKGA 133 F G+C C+ + Sbjct: 127 FYGICSCCKKSNS 139 >ref|NP_465208.1| similar to transcription regulators (Fur family), PerR in B. subtilis [Listeria monocytogenes EGD-e] pir||AC1285 transcription regulators (Fur family), PerR in B. subtilis homolog lmo1683 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99761.1| lmo1683 [Listeria monocytogenes] Length = 148 Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 70/131 (53%) Query: 1 MIKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQM 60 ++K + +T QR A+ + + +SH HPTA ++ L N++ TVYN+LR D + Sbjct: 14 VLKKTGVRITPQRHAILEFLINSHTHPTADDIYRALEGNFPNMSVATVYNNLRVFRDAGL 73 Query: 61 IRELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVV 120 I+EL G+A+SR+D H H +C VCG + + E + TGY I + + Sbjct: 74 IKELSYGDASSRFDFSTSNHYHAICNVCGKIVDFHYPGLDEVEHFAAHMTGYEIDNHRLE 133 Query: 121 FGGVCPNCRSK 131 G+CP C+ K Sbjct: 134 VYGICPACKEK 144 >ref|NP_765100.1| transcription regulator Fur family-like protein [Staphylococcus epidermidis ATCC 12228] gb|AAO05144.1| transcription regulator Fur family-like protein [Staphylococcus epidermidis ATCC 12228] Length = 150 Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 4/128 (3%) Query: 7 LNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQMIRELKL 66 + +T QRQA+ + SSH HPTA E+ L + N++ T+YN+LR D +++EL Sbjct: 24 VRITPQRQAIMRYLISSHSHPTADEIYQALSPKFPNISVATIYNNLRVFKDIGIVKELTY 83 Query: 67 GEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQ-EWTDQVSEE-TGYLITHAHVVFGGV 124 G+++SR+D H HI+CE CG + V PQ + +Q+++ T + +TH + GV Sbjct: 84 GDSSSRFDFNTHNHYHIICEKCGKI--VDFHYPQLDEVEQLAQHVTDFDVTHHRMEIYGV 141 Query: 125 CPNCRSKG 132 C C+ +G Sbjct: 142 CKECKEEG 149 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.131 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 182,219,853 Number of extensions: 6125162 Number of successful extensions: 19683 Number of sequences better than 1.0e-05: 245 Number of HSP's gapped: 19768 Number of HSP's successfully gapped: 245 Length of query: 136 Length of database: 757,237,578 Length adjustment: 98 Effective length of query: 38 Effective length of database: 491,157,876 Effective search space: 18663999288 Effective search space used: 18663999288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)