BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0553.0004.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_357362.1| AGR_L_3146p [Agrobacterium tumefaciens] >gi|179... 62 9e-09 gb|EAJ56514.1| unknown [environmental sequence] 60 4e-08 gb|EAJ40229.1| unknown [environmental sequence] 59 8e-08 gb|EAH24478.1| unknown [environmental sequence] 59 8e-08 ref|NP_387173.1| HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] >... 58 1e-07 >ref|NP_357362.1| AGR_L_3146p [Agrobacterium tumefaciens] ref|NP_533742.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||A98328 hypothetical protein AGR_L_3146 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AD2955 conserved hypothetical protein Atu3242 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK90147.1| AGR_L_3146p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44058.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 213 Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 11/127 (8%) Query: 91 TGISLAKRYELAHLIGGRFTGHP----PYTPLNFKVLEHDITEGIEDFQLDEEPYTFDFD 146 G S + E +IGG++ HP YT +N + + EGI DF E Y D Sbjct: 88 AGDSFRECVEYQFMIGGQWVAHPGNIIDYT-VNITRPDDPLMEGISDFPYTSEQYYMHVD 146 Query: 147 PFTEKTILLEYEAE------GEMRPAAWCHSYGLGRVVFLMPGHHEPSFTHPAIRQLILR 200 P E + + G + P W YG GRV + GH F+ P ++ + R Sbjct: 147 PSNEVLATTTFTGDHAWWIDGVVMPVVWKRKYGKGRVFYSALGHQAKEFSVPQMKTMFRR 206 Query: 201 AATWAAR 207 A WAAR Sbjct: 207 GANWAAR 213 >gb|EAJ56514.1| unknown [environmental sequence] Length = 237 Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 18/189 (9%) Query: 35 LIVQCSENKKLLLSEHLSGYDLCIAYN----ELWNETVSPQQTAXXXXXXXXXXXXXXXH 90 LI Q ++ K + + YD I Y+ + + +S +Q H Sbjct: 51 LISQNADYKIINGLDAYDNYDKLIKYDLIIQSVTMDEISKKQEENLVKAVLNGVGIAGAH 110 Query: 91 TGI--SLAKRYELAHLIGGRFTGHPP-YTPLNFKVLEHDITEGIEDFQLDEEPYTFDFDP 147 G+ S K +IGG+F HP K+L+ ++T G+ DF + E Y +DP Sbjct: 111 GGLIDSFRKNTNYQFMIGGQFVAHPGGMIKHKVKILDDELTIGLSDFDILSEQYYMHYDP 170 Query: 148 FTEKTILLEYEAEGE--------MRPAAWCHSYGLGRVVFLMPGHHEPSF-THPAIRQLI 198 + I+ E + GE + P AW YG G+V F+ GH F + +L+ Sbjct: 171 SIK--IIAETKFGGEVYPWIKDVIMPVAWKKIYGKGKVFFISIGHDPDEFMVYKDGWELL 228 Query: 199 LRAATWAAR 207 R WA R Sbjct: 229 TRGFMWAVR 237 >gb|EAJ40229.1| unknown [environmental sequence] Length = 260 Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 14/123 (11%) Query: 100 ELAHLIGGRFTGHPPYTPLNFKVL--EHDITEGIEDFQLDEEPYTFDFDPFTEKTILLEY 157 E L+G RF HPP +V EH +T+GI+DF++ +EPY ++D + EY Sbjct: 110 EYMELLGSRFISHPPNMDFLVRVKDKEHQLTKGIDDFEVYDEPYYCEYDDKIHVLLDAEY 169 Query: 158 EAEGEM-----------RPAAWCHSYGLGRVVFLMPGHHEPSF-THPAIRQLILRAATWA 205 E RP + H+ G G+V++L+ GH + P + ++ + W Sbjct: 170 SEPAEAYVAVDPPNDDPRPQMYLHNVGKGKVLYLLLGHCRGKYDMRPFVDEVTVERCAWD 229 Query: 206 ARI 208 + Sbjct: 230 TEV 232 >gb|EAH24478.1| unknown [environmental sequence] Length = 194 Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 19/136 (13%) Query: 90 HTGISLAKRYELAHLIGGRFTGHPPYTPLN----FKVLEHD---------ITEGIEDFQL 136 H G + R LIGG+F HPP P N + +D IT GI F+L Sbjct: 52 HMGDAFRDRPTYHFLIGGQFVAHPPGWPDNQDPTADFVHYDVTICKPDDPITYGIRSFKL 111 Query: 137 DEEPYTFDFDPFTEKTILLEYEAE------GEMRPAAWCHSYGLGRVVFLMPGHHEPSFT 190 E Y DP E + E G + P AW + GR+ + GH Sbjct: 112 HSEQYYMLVDPSNEVLATTTFSGEHHWWIEGTVMPIAWKRRWDKGRIFYCSIGHLLDDLK 171 Query: 191 HPAIRQLILRAATWAA 206 HP++ +++ R WAA Sbjct: 172 HPSVTEIMRRGMLWAA 187 >ref|NP_387173.1| HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] emb|CAC47646.1| HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 213 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 9/126 (7%) Query: 91 TGISLAKRYELAHLIGGRFTGHPPYT---PLNFKVLEHDITEGIEDFQLDEEPYTFDFDP 147 G + + E +IGG++ HP +N + + EGI DF E Y DP Sbjct: 88 AGDAFRESVEYQFIIGGQWVAHPGNIIDYRVNVTRPDDPLMEGISDFPYTSEQYYMHVDP 147 Query: 148 FTEKTILLEYEAE------GEMRPAAWCHSYGLGRVVFLMPGHHEPSFTHPAIRQLILRA 201 E + E G + P W +G GRV + GH F P +R + R Sbjct: 148 SNEVLATTTFSGEHASWIEGVVMPVVWKRKHGKGRVFYSSLGHVAKEFEVPEMRTIFRRG 207 Query: 202 ATWAAR 207 A WAAR Sbjct: 208 ANWAAR 213 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 321,287,782 Number of extensions: 12416205 Number of successful extensions: 22203 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 22206 Number of HSP's successfully gapped: 13 Length of query: 210 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 90 Effective length of database: 431,425,698 Effective search space: 38828312820 Effective search space used: 38828312820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)