BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0551.0004.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388430.1| similar to ABC transporter (binding protein) [B... 397 e-109 ref|NP_657547.1| Glyoxalase, Glyoxalase/Bleomycin resistance pro... 385 e-106 ref|NP_833372.1| Glyoxalase family protein [Bacillus cereus ATCC... 383 e-105 ref|NP_979969.1| glyoxylase family protein [Bacillus cereus ATCC... 379 e-104 ref|NP_691956.1| ABC transporter substrate-binding protein [Ocea... 361 1e-98 >ref|NP_388430.1| similar to ABC transporter (binding protein) [Bacillus subtilis] pir||E69781 ABC transporter homolog ydfO - Bacillus subtilis dbj|BAA19383.1| SIMILAR TO PENTACHLOROPHENOL-INDUCED PERIPLASMIC PROTEIN IN FLAVOBACTERIUM SP [Bacillus subtilis] emb|CAB12356.1| ydfO [Bacillus subtilis subsp. subtilis str. 168] Length = 312 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/312 (59%), Positives = 227/312 (72%) Query: 46 MTMQTQGIHHITAFVGDVQRNADFYAGILGLRLVKKTINFDAPEVYHLYFGNEQGSPGTI 105 M +T GIHHITA VG Q N DFYAG+LGLRLVK+T+NFD P YHLYFGNE G PGTI Sbjct: 1 MAKKTMGIHHITAIVGHPQENTDFYAGVLGLRLVKQTVNFDDPGTYHLYFGNEGGKPGTI 60 Query: 106 ITFFPWSXXXXXXXXXXXXXXTTYAVPVGSMDFWKQRLAAYQIPVTEVSRIGESYLAFAD 165 ITFFPW+ T+Y VP G+M FW++RL + +P T++ R GE Y+ F D Sbjct: 61 ITFFPWAGARQGVIGDGQVGVTSYVVPKGAMAFWEKRLEKFNVPYTKIERFGEQYVEFDD 120 Query: 166 FDGLRIELVEREEGALSTWSFGGVTPEHAIKGFGGAVLYSTNPEKTADTLSRTLGLERIA 225 GL +E+VEREEG +TW+FG VTP+ AIKGFGGA L S P+KTAD L +GLER+ Sbjct: 121 PHGLHLEIVEREEGEANTWTFGEVTPDVAIKGFGGATLLSEQPDKTADLLENIMGLERVG 180 Query: 226 EGDGYIRYRSTGDLGNIIDLKAAPVPHGAGGSGTVHHIAWRAKDDAEQLEWGRRVQSHGY 285 + ++RYRS GD+GN+IDLK P+ G G+GTVHHIAWRA DD +QL+W R + SHGY Sbjct: 181 KEGDFVRYRSAGDIGNVIDLKLTPIGRGQMGAGTVHHIAWRANDDEDQLDWQRYIASHGY 240 Query: 286 QPTPVQDRQYFNAIYFREEGGILFEIATDPPGFARDEAPDALGQKLMLPAWFEPHRAVIE 345 TPV+DR YFNAIYFRE G ILFEIATDPPGFA DE + +G+KLMLP +EPHR IE Sbjct: 241 GVTPVRDRNYFNAIYFREHGEILFEIATDPPGFAHDETQETMGEKLMLPVQYEPHRTQIE 300 Query: 346 ENLTPFEIREIE 357 + L PFE+RE++ Sbjct: 301 QGLLPFEVRELD 312 >ref|NP_657547.1| Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [Bacillus anthracis A2012] ref|NP_845967.1| glyoxylase family protein [Bacillus anthracis str. Ames] gb|AAP27453.1| glyoxylase family protein [Bacillus anthracis str. Ames] Length = 312 Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/312 (59%), Positives = 223/312 (71%) Query: 46 MTMQTQGIHHITAFVGDVQRNADFYAGILGLRLVKKTINFDAPEVYHLYFGNEQGSPGTI 105 M +T GIHHITA VG Q N DFYAG+LGLRLVK+T+NFD P YHLYFGNE G PGTI Sbjct: 1 MEKKTMGIHHITAIVGHPQENVDFYAGVLGLRLVKQTVNFDDPGTYHLYFGNEGGKPGTI 60 Query: 106 ITFFPWSXXXXXXXXXXXXXXTTYAVPVGSMDFWKQRLAAYQIPVTEVSRIGESYLAFAD 165 ITFFPW+ T+Y VP G+M FW+ RL + I T+++R GE YL F D Sbjct: 61 ITFFPWAGARQGIIGDGQVGITSYVVPKGAMKFWENRLEKFDISYTKMTRFGEQYLEFDD 120 Query: 166 FDGLRIELVEREEGALSTWSFGGVTPEHAIKGFGGAVLYSTNPEKTADTLSRTLGLERIA 225 GL IELVEREEG L+ WSFG VTPE AIKGFGGAVL S +P+KTA+ L +GLE+I Sbjct: 121 PHGLHIELVEREEGELNNWSFGEVTPEVAIKGFGGAVLLSAHPQKTAELLEHVMGLEKIG 180 Query: 226 EGDGYIRYRSTGDLGNIIDLKAAPVPHGAGGSGTVHHIAWRAKDDAEQLEWGRRVQSHGY 285 E ++R+RS+ D+GNIIDLK + + G G GTVHHIAWRA DDA+QL+W V GY Sbjct: 181 EEGEFVRFRSSADIGNIIDLKLSTIGRGQMGVGTVHHIAWRASDDADQLDWKEHVSRFGY 240 Query: 286 QPTPVQDRQYFNAIYFREEGGILFEIATDPPGFARDEAPDALGQKLMLPAWFEPHRAVIE 345 TPVQDR YFNAIYFRE G ILFEIATDPPGFA DE+ + +G++L LP +E HR +E Sbjct: 241 HVTPVQDRNYFNAIYFREHGEILFEIATDPPGFAHDESLETMGEELKLPEQYEQHRKQME 300 Query: 346 ENLTPFEIREIE 357 + L PFE+R ++ Sbjct: 301 QTLLPFEVRNLD 312 >ref|NP_833372.1| Glyoxalase family protein [Bacillus cereus ATCC 14579] gb|AAP10573.1| Glyoxalase family protein [Bacillus cereus ATCC 14579] Length = 312 Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/312 (58%), Positives = 222/312 (71%) Query: 46 MTMQTQGIHHITAFVGDVQRNADFYAGILGLRLVKKTINFDAPEVYHLYFGNEQGSPGTI 105 M +T GIHHITA VG Q N DFYAG+LGLRLVK+T+NFD P YHLYFGNE G PGTI Sbjct: 1 MEKKTMGIHHITAIVGHPQENVDFYAGVLGLRLVKQTVNFDDPGTYHLYFGNEGGKPGTI 60 Query: 106 ITFFPWSXXXXXXXXXXXXXXTTYAVPVGSMDFWKQRLAAYQIPVTEVSRIGESYLAFAD 165 ITFFPW+ T+Y VP G+M+FW+ RL + + T+++R GE YL F D Sbjct: 61 ITFFPWAGARQGIIGDGQVGITSYVVPKGTMEFWENRLEKFDVSYTKMTRFGEQYLEFDD 120 Query: 166 FDGLRIELVEREEGALSTWSFGGVTPEHAIKGFGGAVLYSTNPEKTADTLSRTLGLERIA 225 GL IELVERE G L+ WSFG VTPE AIKGFGGAVL S P+KTA+ L +GLE+I Sbjct: 121 PHGLHIELVEREAGELNNWSFGEVTPEVAIKGFGGAVLLSAQPQKTAELLEHIMGLEKIG 180 Query: 226 EGDGYIRYRSTGDLGNIIDLKAAPVPHGAGGSGTVHHIAWRAKDDAEQLEWGRRVQSHGY 285 E ++R+RS+ D+GNIIDLK + + G G GTVHHIAWRA DDA+QL+W V GY Sbjct: 181 EEGEFVRFRSSADIGNIIDLKLSTIGRGQMGVGTVHHIAWRASDDADQLDWKEYVSRFGY 240 Query: 286 QPTPVQDRQYFNAIYFREEGGILFEIATDPPGFARDEAPDALGQKLMLPAWFEPHRAVIE 345 TPVQDR YFNAIYFRE G ILFEIATDPPGFA DE+ + +G++L LP +E HR IE Sbjct: 241 HVTPVQDRNYFNAIYFREHGEILFEIATDPPGFAHDESLETMGEELKLPEQYEQHRKQIE 300 Query: 346 ENLTPFEIREIE 357 + L PFE+R ++ Sbjct: 301 QTLLPFEVRNLD 312 >ref|NP_979969.1| glyoxylase family protein [Bacillus cereus ATCC 10987] gb|AAS42577.1| glyoxylase family protein [Bacillus cereus ATCC 10987] Length = 312 Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/312 (58%), Positives = 221/312 (70%) Query: 46 MTMQTQGIHHITAFVGDVQRNADFYAGILGLRLVKKTINFDAPEVYHLYFGNEQGSPGTI 105 M +T GIHHITA VG Q N DFYAG+LGLRLVK+T+NFD P YHLYFGNE G PGTI Sbjct: 1 MEKKTMGIHHITAIVGHPQENVDFYAGVLGLRLVKQTVNFDDPGTYHLYFGNEGGKPGTI 60 Query: 106 ITFFPWSXXXXXXXXXXXXXXTTYAVPVGSMDFWKQRLAAYQIPVTEVSRIGESYLAFAD 165 ITFFPW+ T+Y VP G+M+FW+ RL + + T+++R GE YL F D Sbjct: 61 ITFFPWAGARQGVIGDGQVGITSYVVPKGAMEFWENRLEKFDVSYTKMTRFGEQYLEFDD 120 Query: 166 FDGLRIELVEREEGALSTWSFGGVTPEHAIKGFGGAVLYSTNPEKTADTLSRTLGLERIA 225 GL IELVEREEG L+ W+FG VTPE AIKGF GAVL S P+KTA+ L +GLE+I Sbjct: 121 PHGLHIELVEREEGELNNWTFGEVTPEVAIKGFDGAVLLSAQPQKTAELLEHIMGLEKIG 180 Query: 226 EGDGYIRYRSTGDLGNIIDLKAAPVPHGAGGSGTVHHIAWRAKDDAEQLEWGRRVQSHGY 285 E ++R+RS+ +GNIIDL+ + + G G GTVHHIAWRA DDA+QL+W V GY Sbjct: 181 EEGEFVRFRSSAKIGNIIDLRLSTIGRGQMGVGTVHHIAWRASDDADQLDWKEHVSRFGY 240 Query: 286 QPTPVQDRQYFNAIYFREEGGILFEIATDPPGFARDEAPDALGQKLMLPAWFEPHRAVIE 345 TPVQDR YFNAIYFRE G ILFEIATDPPGFA DE+ + +G++L LP +E HR IE Sbjct: 241 HVTPVQDRNYFNAIYFREHGEILFEIATDPPGFAHDESLETMGEELKLPEQYEQHRKQIE 300 Query: 346 ENLTPFEIREIE 357 + L PFE+R ++ Sbjct: 301 QTLLPFEVRHLD 312 >ref|NP_691956.1| ABC transporter substrate-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC12991.1| ABC transporter substrate-binding protein [Oceanobacillus iheyensis HTE831] Length = 312 Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 217/309 (70%) Query: 49 QTQGIHHITAFVGDVQRNADFYAGILGLRLVKKTINFDAPEVYHLYFGNEQGSPGTIITF 108 +T GIHHI+ VG Q N DFYA ILGLRLVKKTINFD P YHLY GN +G PGTIITF Sbjct: 3 RTAGIHHISTIVGHPQENVDFYASILGLRLVKKTINFDDPGTYHLYLGNNKGEPGTIITF 62 Query: 109 FPWSXXXXXXXXXXXXXXTTYAVPVGSMDFWKQRLAAYQIPVTEVSRIGESYLAFADFDG 168 FPW+ T+YA+P+G+M+FW++RLA + I +++R GE+YLAF D G Sbjct: 63 FPWANAYQGRIGSGQVGVTSYAIPLGTMNFWEERLAKFNISTEKITRFGETYLAFKDIHG 122 Query: 169 LRIELVEREEGALSTWSFGGVTPEHAIKGFGGAVLYSTNPEKTADTLSRTLGLERIAEGD 228 L +ELVE E G ++ +SFG +TPE +IKGFGGA+L S+ PEKT +TL TLG E++AE Sbjct: 123 LNLELVETENGEINDFSFGDITPEVSIKGFGGAILLSSQPEKTGETLVDTLGFEKVAEEG 182 Query: 229 GYIRYRSTGDLGNIIDLKAAPVPHGAGGSGTVHHIAWRAKDDAEQLEWGRRVQSHGYQPT 288 +IRY+S GD+GN ID+K P G G GTVHHIA+RAKD+ E EW + V +HG T Sbjct: 183 EFIRYQSYGDIGNTIDIKQTASPRGQMGVGTVHHIAFRAKDNQEHFEWQQHVANHGLHVT 242 Query: 289 PVQDRQYFNAIYFREEGGILFEIATDPPGFARDEAPDALGQKLMLPAWFEPHRAVIEENL 348 V+DR YFNAIYF+E G ILFEIATDPP FA DE+ +G+ L L +E +R +E+ L Sbjct: 243 EVKDRNYFNAIYFKEHGEILFEIATDPPEFAHDESEKTMGETLKLSNQYEVYRGRLEKKL 302 Query: 349 TPFEIREIE 357 P EIR+++ Sbjct: 303 IPIEIRDLD 311 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 567,949,421 Number of extensions: 24657755 Number of successful extensions: 44107 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 43979 Number of HSP's successfully gapped: 63 Length of query: 361 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 234 Effective length of database: 412,420,005 Effective search space: 96506281170 Effective search space used: 96506281170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)