BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0551.0002.p (120 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977771.1| transcriptional regulator, MarR family [Bacillu... 135 3e-31 ref|NP_655239.1| MarR, MarR family [Bacillus anthracis A2012] >g... 135 4e-31 ref|NP_831118.1| Transcriptional regulator, MarR family [Bacillu... 134 9e-31 ref|NP_691524.1| transcriptional regulator [Oceanobacillus iheye... 130 7e-30 ref|NP_832869.1| Transcriptional regulator, MarR family [Bacillu... 122 2e-27 >ref|NP_977771.1| transcriptional regulator, MarR family [Bacillus cereus ATCC 10987] gb|AAS40379.1| transcriptional regulator, MarR family [Bacillus cereus ATCC 10987] Length = 148 Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 64/118 (54%), Positives = 83/118 (70%) Query: 1 MDHAVKDMKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLK 60 MD K ++S+GL EF VLE+LYH+ PLQQIGE+IL+ SGSITY +DKLEK+GL+K Sbjct: 28 MDTTNKSIQSNGLNPTEFAVLELLYHKGGQPLQQIGERILIASGSITYVVDKLEKKGLVK 87 Query: 61 RVPCSEDRRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGK 118 R+PC DRRV YA++T++G IFP H IH L +EEK + + LLKK+GK Sbjct: 88 RIPCPNDRRVIYAQLTESGENFIASIFPGHEQVIHQSFEMLTKEEKDELLDLLKKIGK 145 >ref|NP_655239.1| MarR, MarR family [Bacillus anthracis A2012] ref|NP_843812.1| transcriptional regulator, MarR family [Bacillus anthracis str. Ames] gb|AAP25298.1| transcriptional regulator, MarR family [Bacillus anthracis str. Ames] Length = 148 Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 64/118 (54%), Positives = 83/118 (70%) Query: 1 MDHAVKDMKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLK 60 MD K ++S+GL EF VLE+LYH+ PLQQIGE+IL+ SGSITY +DKLEK+GL+K Sbjct: 28 MDTTNKSIQSNGLNPTEFAVLELLYHKGGQPLQQIGERILIASGSITYVVDKLEKKGLVK 87 Query: 61 RVPCSEDRRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGK 118 R+PC DRRV YA++T++G IFP H IH L +EEK + + LLKK+GK Sbjct: 88 RIPCPNDRRVIYAQLTESGETFIASIFPGHEQVIHQSFEMLTKEEKDELLDLLKKIGK 145 >ref|NP_831118.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] gb|AAP08319.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] Length = 148 Score = 134 bits (336), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 63/118 (53%), Positives = 83/118 (70%) Query: 1 MDHAVKDMKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLK 60 MD K ++S+GL EF VLE+LYH+ PLQQIGE+IL+ SGSITY +DKLEK+GL+K Sbjct: 28 MDTTNKSIQSNGLNPTEFAVLELLYHKGGQPLQQIGERILIASGSITYVVDKLEKKGLVK 87 Query: 61 RVPCSEDRRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGK 118 R+PC DRRV YA++T++G IFP H IH L ++EK + + LLKK+GK Sbjct: 88 RIPCPNDRRVIYAQLTESGENFIASIFPGHEKVIHQSFEMLTKDEKDELLDLLKKIGK 145 >ref|NP_691524.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC12559.1| transcriptional regulator (MarR family) [Oceanobacillus iheyensis HTE831] Length = 150 Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 65/120 (54%), Positives = 84/120 (70%) Query: 1 MDHAVKDMKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLK 60 M+ D+KS G++ +F VLE+LYHR + PLQ+I +KIL+TSGSITY ++KLEK+G L Sbjct: 28 MEQVELDVKSRGISLTDFAVLELLYHRGQQPLQKIADKILLTSGSITYVVNKLEKQGYLT 87 Query: 61 RVPCSEDRRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGKGV 120 R C D+RVTYA I+D G EL D IFP H I +M GL+ EK +AI LLKKLG + Sbjct: 88 REQCELDKRVTYAVISDKGTELLDSIFPGHWDKIKQIMHGLDYHEKEEAIVLLKKLGTAI 147 >ref|NP_832869.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] gb|AAP10070.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] Length = 147 Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/112 (54%), Positives = 79/112 (70%) Query: 6 KDMKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLKRVPCS 65 +D+KS+GL EF VLE+LY + P+Q+IG+KIL+ S SITY +DKLEK+ L R PC Sbjct: 30 EDIKSYGLNPTEFAVLELLYSKGDQPIQKIGDKILLASSSITYVVDKLEKKRFLIRKPCP 89 Query: 66 EDRRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLG 117 +DRRVTYA IT G EL D IFP+H +I ++GGL+ +K I LKKLG Sbjct: 90 KDRRVTYASITSEGIELMDIIFPQHKEAIRQILGGLDYIDKKMIIHKLKKLG 141 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 159,961,775 Number of extensions: 5655386 Number of successful extensions: 16712 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 16767 Number of HSP's successfully gapped: 150 Length of query: 120 Length of database: 757,237,578 Length adjustment: 84 Effective length of query: 36 Effective length of database: 529,169,262 Effective search space: 19050093432 Effective search space used: 19050093432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)