BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0035.p (157 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183699.1| hypothetical protein Exigu091401 [Exiguobacte... 243 8e-64 ref|NP_243115.1| peptide methionine sulfoxide reductase [Bacillu... 229 2e-59 ref|NP_831549.1| Peptide methionine sulfoxide reductase [Bacillu... 222 2e-57 ref|NP_978247.1| peptide methionine sulfoxide reductase [Bacillu... 220 8e-57 ref|NP_242314.1| peptide methionine sulfoxide reductase [Bacillu... 218 4e-56 >ref|ZP_00183699.1| hypothetical protein Exigu091401 [Exiguobacterium sp. 255-15] Length = 163 Score = 243 bits (621), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 114/157 (72%), Positives = 131/157 (83%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MVTPFEELPGIH IVSGY GG V+NPTYEQVKTGTTGH EVV+IT++PA+F Y RLLEL+ Sbjct: 1 MVTPFEELPGIHSIVSGYTGGHVDNPTYEQVKTGTTGHSEVVEITFDPALFSYERLLELY 60 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 WPQ DPTD GGQFQDRG QY A+FY+ EEQRLAA+ASR+ +AA+ RF+ P+VT I PA Sbjct: 61 WPQTDPTDAGGQFQDRGTQYAPAIFYHTEEQRLAAIASRDALAATNRFKQPIVTRIEPAH 120 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 FY AEEYHQD+HKKNP HYK+DR+ SGRD FI W Sbjct: 121 AFYPAEEYHQDFHKKNPAHYKKDRKASGRDAFIDVAW 157 >ref|NP_243115.1| peptide methionine sulfoxide reductase [Bacillus halodurans] sp|Q9KAN8|MSRA_BACHD Peptide methionine sulfoxide reductase msrA (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) pir||A83931 peptide methionine sulfoxide reductase BH2249 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05968.1| peptide methionine sulfoxide reductase [Bacillus halodurans] Length = 176 Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/157 (69%), Positives = 124/157 (78%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MV PF++ PGI +VSGYAGGTVENPTYEQVKTGTTGHYEVV ITY P +FP+ +LL L+ Sbjct: 18 MVQPFDKQPGIESVVSGYAGGTVENPTYEQVKTGTTGHYEVVHITYVPELFPFEKLLSLY 77 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 WPQIDPTD GQF DRG QYRTA+FY NEEQR A SRE + SG+F+ P+VT ILP Sbjct: 78 WPQIDPTDPDGQFHDRGPQYRTAIFYENEEQRALAERSREALEKSGKFKKPIVTSILPMA 137 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 FY AEE HQ ++KKNP YKEDRE+SGRD FI KHW Sbjct: 138 TFYPAEEEHQQFYKKNPMAYKEDREKSGRDEFIYKHW 174 >ref|NP_831549.1| Peptide methionine sulfoxide reductase [Bacillus cereus ATCC 14579] gb|AAP08750.1| Peptide methionine sulfoxide reductase [Bacillus cereus ATCC 14579] Length = 178 Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 100/157 (63%), Positives = 129/157 (82%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MV PF+ELPGIH ++SGYAGG VENPTYEQVK GT+GH EVVQIT++P++FPY +LL+L+ Sbjct: 19 MVKPFDELPGIHKVLSGYAGGHVENPTYEQVKAGTSGHLEVVQITFDPSIFPYQKLLDLY 78 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 WPQIDPTDDGGQF DRG YRTA+FY+NE Q+ A S++ +A SG F+ P+VTEI PA Sbjct: 79 WPQIDPTDDGGQFFDRGPSYRTAIFYHNETQKGLAEKSKQALAESGMFKDPIVTEIRPAA 138 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 FY AEEYHQ ++KKNP+ Y ++++SGR+ FI ++W Sbjct: 139 PFYEAEEYHQHFYKKNPEKYATEQKESGREDFIKENW 175 >ref|NP_978247.1| peptide methionine sulfoxide reductase [Bacillus cereus ATCC 10987] gb|AAS40855.1| peptide methionine sulfoxide reductase [Bacillus cereus ATCC 10987] Length = 178 Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 100/157 (63%), Positives = 128/157 (81%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MV PF+ELPGIH + SGYAGG VENPTYEQVK GT+GH EVVQIT++P++FPY +LL+L+ Sbjct: 19 MVKPFDELPGIHKVRSGYAGGHVENPTYEQVKAGTSGHLEVVQITFDPSIFPYKKLLDLY 78 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 WPQIDPTDDGGQF DRG YRTA+FY+NE Q+ A S++ +A SG F+ P+VTEI PA Sbjct: 79 WPQIDPTDDGGQFFDRGPSYRTAIFYHNETQKELAEKSKQALAESGMFKEPIVTEIRPAA 138 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 FY AEEYHQ ++KKNP+ Y ++++SGR+ FI ++W Sbjct: 139 PFYEAEEYHQHFYKKNPEKYATEQKESGREDFIKENW 175 >ref|NP_242314.1| peptide methionine sulfoxide reductase [Bacillus halodurans] pir||H83830 peptide methionine sulfoxide reductase BH1448 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05167.1| peptide methionine sulfoxide reductase [Bacillus halodurans] Length = 179 Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 100/157 (63%), Positives = 124/157 (78%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MV+PFEE PGIH +VSGY GG ENPTY++V + TTGHYE VQI+++P VFPY +LLE++ Sbjct: 19 MVSPFEEEPGIHQVVSGYTGGHTENPTYKEVCSETTGHYEAVQISFDPEVFPYEKLLEIY 78 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 W QIDPTD GGQF DRG YRTA+FY++E+Q+ AA AS++++ SG+F P+VT ILPA Sbjct: 79 WTQIDPTDPGGQFHDRGDSYRTAIFYHDEQQKQAADASKQKLEESGKFNAPIVTRILPAK 138 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 FY AEEYHQ YHKKNP HYK R SGR+ FI +HW Sbjct: 139 PFYPAEEYHQKYHKKNPFHYKMYRHGSGREAFIKQHW 175 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 262,918,946 Number of extensions: 10580548 Number of successful extensions: 25857 Number of sequences better than 1.0e-05: 915 Number of HSP's gapped: 25149 Number of HSP's successfully gapped: 915 Length of query: 157 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 42 Effective length of database: 445,001,193 Effective search space: 18690050106 Effective search space used: 18690050106 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)