BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0031.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_694323.1| hypothetical protein OB3401 [Oceanobacillus ihe... 375 e-103 ref|NP_356676.1| AGR_L_1780p [Agrobacterium tumefaciens] >gi|179... 303 5e-81 gb|EAI39927.1| unknown [environmental sequence] 279 9e-74 ref|NP_384220.1| PUTATIVE OXIDOREDUCTASE PROTEIN [Sinorhizobium ... 275 1e-72 gb|AAQ87068.1| Hypothetical protein RNGR00041 [Rhizobium sp. NGR... 270 5e-71 >ref|NP_694323.1| hypothetical protein OB3401 [Oceanobacillus iheyensis HTE831] dbj|BAC15357.1| hypothetical protein [Oceanobacillus iheyensis HTE831] Length = 363 Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/341 (51%), Positives = 236/341 (69%), Gaps = 1/341 (0%) Query: 13 HEAKPVVGPDEFVIAAIALDHGHIYGMCNGLVEAGAQLKWVYDPDPEKVKAFIAAYPGVR 72 H+ KPV P+ IAA L+HGHIY MC G+ +AGA ++WV+D DP+K+ AF +P + Sbjct: 14 HKEKPVE-PNTLFIAACGLEHGHIYNMCKGMKQAGAVIRWVWDNDPDKIAAFQQQFPEAK 72 Query: 73 VARTAEEVLEDPEVRLVAAAAVPSERGPLGLRVMAHGKDYFTDKAPFTAMEQLEAARLQA 132 A + E+L D +++VA AA+PSERG +GL V+ GK +F+ K PFT +EQL+AAR + Sbjct: 73 AASSLNEILHDQAIQMVACAAIPSERGDIGLCVLEAGKHFFSAKTPFTTLEQLQAAREKV 132 Query: 133 EKTKRKYMCYFSERLHVESAVYAGQLIRQGAIGRVLQLIGMGPHRLNAPSRPEWFFQREK 192 T + ++SERL VE + +A QL+ QGAIG V+Q++G+GPHRL+ +RP WFF++ Sbjct: 133 NDTGLTWAVFYSERLQVECSGFAEQLLEQGAIGDVIQVLGLGPHRLHISNRPAWFFKKAY 192 Query: 193 YGGILCDIGSHQIEQFLYYGNCRDAKVLHSKVANYNNAAYPELEDFGDATLVGDNGTTQY 252 YGGI+ DIGSHQIEQFL++ + DA + S N+ + +PE ED+GD L+GDNG Y Sbjct: 193 YGGIISDIGSHQIEQFLWFTHANDATIQSSNARNFAHPEHPEFEDYGDVHLIGDNGAMHY 252 Query: 253 FRVDWFTPAGLGTWGDGRTIIMGTEGYMELRKYSDIARSNTPDHVFWVDGEGEHYEQVAG 312 FRVDWFTP GL WGDGRT I+GT+GY+ELRKY DIA ++ + ++ V+ GE V G Sbjct: 253 FRVDWFTPDGLRNWGDGRTTILGTDGYIELRKYVDIANNSDGERLYLVNHGGERMYDVKG 312 Query: 313 KVGFPFFGELILDCLERTELAMTQAHVFKAAELCLTAQSQA 353 K+G+P+F L D L+ T AM Q H FKAAELCL AQ A Sbjct: 313 KIGYPYFYRLAHDILDNTSTAMPQEHAFKAAELCLLAQQHA 353 >ref|NP_356676.1| AGR_L_1780p [Agrobacterium tumefaciens] ref|NP_534451.1| oxidoreductase [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||C98242 hypothetical protein AGR_L_1780 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AI3043 oxidoreductase Atu3965 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK89461.1| AGR_L_1780p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44767.1| oxidoreductase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 338 Score = 303 bits (775), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 152/327 (46%), Positives = 204/327 (62%), Gaps = 3/327 (0%) Query: 28 AIALDHGHIYGMCNGLVEAGAQLK-WVYDPDPEKVKAFIAAYPGVRVARTAEEVLEDPEV 86 A+ ++H HI+GM L++AGA+ W + +P+ V+ F+ +P V A + E +L D + Sbjct: 9 ALGIEHRHIFGMAQNLLDAGAEFAGWWTEGEPDVVEGFVKRFPDVPRAASKEALLADGSI 68 Query: 87 RLVAAAAVPSERGPLGLRVMAHGKDYFTDKAPFTAMEQLEAARLQAEKTKRKYMCYFSER 146 LV A +PS+R L + M GKD +DK T EQL+ R KTKR + FSER Sbjct: 69 DLVVIADIPSKRADLAIAAMEAGKDVMSDKPGCTTFEQLDRLRQTVAKTKRIWTVDFSER 128 Query: 147 LHVESAVYAGQLIRQGAIGRVLQLIGMGPHRLNAPSRPEWFFQREKYGGILCDIGSHQIE 206 V S A +L+ QGAIGRV+Q +G+GPHRLN RP WFF+RE YGGIL DI SHQI+ Sbjct: 129 FEVPSVTKAAELVAQGAIGRVIQTVGLGPHRLNRQIRPTWFFEREAYGGILTDIASHQID 188 Query: 207 QFLYYGNCRDAKVLHSKVANYNNAAYPELEDFGDATLVGDNGTTQYFRVDWFTPAGLGTW 266 QF+++ + +++ + VANY N P L+DFG+ L GD G Y RVDW+TP L TW Sbjct: 189 QFMFFTGSTEVEIVSATVANYANPHDPGLQDFGEVVLRGDKGHG-YIRVDWYTPDALPTW 247 Query: 267 GDGRTIIMGTEGYMELRKYSDIARSNTPDHVFWVDGEGEHYEQVAGKVGFPFFGELILDC 326 GDGR I+GTEGY+ELRKY D+ S D + V+G+ Y +G G P+FG + D Sbjct: 248 GDGRLTILGTEGYIELRKYVDVGNSEGTDRLVLVNGDRCEYIDASG-AGLPYFGLVCDDI 306 Query: 327 LERTELAMTQAHVFKAAELCLTAQSQA 353 RTE AMTQ HVFK +L L AQ++A Sbjct: 307 RNRTETAMTQEHVFKVCDLSLQAQAKA 333 >gb|EAI39927.1| unknown [environmental sequence] Length = 339 Score = 279 bits (713), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 138/332 (41%), Positives = 199/332 (59%), Gaps = 3/332 (0%) Query: 26 IAAIALDHGHIYGMCNGLVEAGAQ-LKWVYDPDPEKVKAFIAAYPGVRVARTAEEVLEDP 84 +AA+ ++H HI+G NG++ G + + W + D + K F +P + R E++L++ Sbjct: 6 VAAMGVEHRHIFGQLNGMLNLGCECVGWWNETDNKITKDFNEKHPDIPRFRNKEDLLKNK 65 Query: 85 EVRLVAAAAVPSERGPLGLRVMAHGKDYFTDKAPFTAMEQLEAARLQAEKTKRKYMCYFS 144 E+ LV A +P +R L + M GKD DK T +EQL+ A+KT + + FS Sbjct: 66 EIELVLIADIPVKRAALAIECMNAGKDVMLDKPGCTTLEQLKEIENTAKKTGKIFSIDFS 125 Query: 145 ERLHVESAVYAGQLIRQGAIGRVLQLIGMGPHRLNAPSRPEWFFQREKYGGILCDIGSHQ 204 ER V S A LI+ G IG V+Q IGMGPHRLN +RPEWFF ++YGGILCDI SHQ Sbjct: 126 ERFEVPSVQAAYDLIQAGEIGDVVQTIGMGPHRLNIQTRPEWFFDYDQYGGILCDIASHQ 185 Query: 205 IEQFLYYGNCRDAKVLHSKVANYNNAAYPELEDFGDATLVGDNGTTQYFRVDWFTPAGLG 264 I+QFL++ ++ ++++S N++N + + EDFG+ + GD G Y RVDW+TP L Sbjct: 186 IDQFLFFTGSKNVEIINSSTGNFSNPEHNKFEDFGEILIHGDKGRG-YIRVDWYTPDALP 244 Query: 265 TWGDGRTIIMGTEGYMELRKYSDIARSNTPDHVFWVDGEGEHYEQVAGKVGFPFFGELIL 324 WGDGR I+GT+GY+ELRKY D+ DH+F V+ + Y+ A K +F L+ Sbjct: 245 NWGDGRLTILGTKGYIELRKYVDLVGREGTDHLFLVNNKKYEYKN-ASKEPLTYFERLMG 303 Query: 325 DCLERTELAMTQAHVFKAAELCLTAQSQALNL 356 D + RT AM Q+H K EL + AQ A+ L Sbjct: 304 DVVNRTSTAMDQSHCLKVMELAIKAQKNAIRL 335 >ref|NP_384220.1| PUTATIVE OXIDOREDUCTASE PROTEIN [Sinorhizobium meliloti] emb|CAC41501.1| PUTATIVE OXIDOREDUCTASE PROTEIN [Sinorhizobium meliloti] Length = 338 Score = 275 bits (703), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 146/333 (43%), Positives = 191/333 (57%), Gaps = 4/333 (1%) Query: 22 DEFVIAAIALDHGHIYGMCNGLVEAGAQLKWVYDPDPEKVKAFIAAYPGVRVARTAEEVL 81 DE AA+ L+H HIYG N L+ AGA+L ++ D F A Y R TAEE+L Sbjct: 2 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEIL 61 Query: 82 EDPEVRLVAAAAVPSERGPLGLRVMAHGKDYFTDKAPFTAMEQLEAARLQAEKTKRKYMC 141 ED + L+ +AAV SER L +R M HGKD DK T+ +QL R +T R + Sbjct: 62 EDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSI 121 Query: 142 YFSERLHVESAVYAGQLIRQGAIGRVLQLIGMGPHRLNAPSRPEWFFQREKYGGILCDIG 201 +SE + V AG+L+ GAIG V+ ++G+GPHRL +RP+WFF+R YGGIL DI Sbjct: 122 LYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIA 181 Query: 202 SHQIEQFLYYGNCRDAKVLHSKVANYNNAAYPELEDFGDATLVGDNGTTQYFRVDWFTPA 261 SHQ EQFL++ DA VL + V N + PEL+D G L TT V+W TP Sbjct: 182 SHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHL-STGRTTGMIHVNWLTPE 240 Query: 262 GLGTWGDGRTIIMGTEGYMELRKYSDIARSNTPDHVFWVDGEG-EHYEQVAGKVGFPFFG 320 G+ TWGDGR I+GT G +E+RK D+A +H+F D G EH + +V PF Sbjct: 241 GMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHID--CSRVDLPFGR 298 Query: 321 ELILDCLERTELAMTQAHVFKAAELCLTAQSQA 353 + + D +RTE AM Q FKA EL L AQ+ A Sbjct: 299 QFLADIRDRTETAMPQERCFKAMELALQAQAIA 331 >gb|AAQ87068.1| Hypothetical protein RNGR00041 [Rhizobium sp. NGR234] Length = 338 Score = 270 bits (689), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 145/332 (43%), Positives = 193/332 (58%), Gaps = 4/332 (1%) Query: 23 EFVIAAIALDHGHIYGMCNGLVEAGAQLKWVYDPDPEKVKAFIAAYPGV-RVARTAEEVL 81 E AA+ L+H HIYG N L+ AGA+L ++PD F Y V R+A A+ +L Sbjct: 3 ELRFAAVGLNHNHIYGQVNCLIRAGARLVGFHEPDEALAAEFAGVYKDVPRIAALAQ-IL 61 Query: 82 EDPEVRLVAAAAVPSERGPLGLRVMAHGKDYFTDKAPFTAMEQLEAARLQAEKTKRKYMC 141 ED + L+ +AAV +ER L +R M HGKD TDK T+++QL R +T R Y Sbjct: 62 EDEGIGLITSAAVSAERAELAIRAMQHGKDVLTDKPGMTSLDQLAKVRRIQAETGRIYSI 121 Query: 142 YFSERLHVESAVYAGQLIRQGAIGRVLQLIGMGPHRLNAPSRPEWFFQREKYGGILCDIG 201 +SE + V AG+L+ GAIG V+ L+G+GPHRL +RP+WFF+R YGGIL DI Sbjct: 122 LYSEHFESPATVKAGELVAAGAIGDVVHLVGLGPHRLRRETRPDWFFRRSDYGGILVDIA 181 Query: 202 SHQIEQFLYYGNCRDAKVLHSKVANYNNAAYPELEDFGDATLVGDNGTTQYFRVDWFTPA 261 SHQ EQFL++ DA +L + V N + PEL+D GD L T V+W TP Sbjct: 182 SHQCEQFLFFTGASDATILSASVDNRSVPDRPELQDTGDIHL-STASATGTIHVNWLTPD 240 Query: 262 GLGTWGDGRTIIMGTEGYMELRKYSDIARSNTPDHVFWVDGEGEHYEQVAGKVGFPFFGE 321 G+ TWGDGR I+GT G +E+RK D+A +H+F D G + +G V PF + Sbjct: 241 GMPTWGDGRLFIVGTTGTIEVRKTVDLAGRGGANHLFLADRNGVEHIDCSG-VELPFGRQ 299 Query: 322 LILDCLERTELAMTQAHVFKAAELCLTAQSQA 353 L+ D +RTE AM Q FKA EL L AQ+ A Sbjct: 300 LLADIRDRTETAMPQERCFKAMELALRAQAIA 331 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 564,432,058 Number of extensions: 23993658 Number of successful extensions: 47976 Number of sequences better than 1.0e-05: 67 Number of HSP's gapped: 47944 Number of HSP's successfully gapped: 67 Length of query: 362 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 235 Effective length of database: 412,420,005 Effective search space: 96918701175 Effective search space used: 96918701175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)