BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0030.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAC36145.1| unknown [environmental sequence] 133 2e-30 gb|EAI39923.1| unknown [environmental sequence] 129 4e-29 ref|NP_623524.1| Sugar phosphate isomerases/epimerases [Thermoan... 126 3e-28 ref|NP_244212.1| BH3346~unknown conserved protein in others [Bac... 104 8e-22 gb|EAD50410.1| unknown [environmental sequence] 103 3e-21 >gb|EAC36145.1| unknown [environmental sequence] Length = 233 Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 109/193 (56%), Gaps = 6/193 (3%) Query: 1 VICATHIPWDRLVNDLDALAAEHKLWNCKYVGLGALPGEYQTSQEGYRTFAKKVSETALV 60 VICATH P ++++N+ D + + ++NCKY ALP + K + + + Sbjct: 38 VICATHEPNEQIINNTDEVINKLNIFNCKY---SALPYPLDVDMKNLEEIDKFIEDINIA 94 Query: 61 LKQKH--GLQFVYHNHDFEFERLDGVTGLEVLLQEADPAAFDFELDLYWVQAGGGSPVDW 118 + H G YHNH EF+++ L+ + + D E D+YW+Q GG P+ W Sbjct: 95 GSKFHAEGKVLCYHNHALEFQKIQNEIILDRIYKNTDSRFIQGEPDIYWIQKGGQDPLMW 154 Query: 119 IHRVKDRMRVVHLKDMAVVA-RKAEFAEIGQGNMNYPAIIEACRETGVEWFVVEQDVCRR 177 ++ RM ++HLKD ++ +++ FAE+G GN++ I++ ++G +WF+VEQD C Sbjct: 155 CKKLDQRMPLLHLKDFTMINDQESFFAEVGLGNLDIKNIVKTATDSGCKWFIVEQDECNG 214 Query: 178 DPFESLKISLDYL 190 DPF+SL+IS + L Sbjct: 215 DPFDSLRISYNNL 227 >gb|EAI39923.1| unknown [environmental sequence] Length = 256 Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 109/193 (56%), Gaps = 6/193 (3%) Query: 1 VICATHIPWDRLVNDLDALAAEHKLWNCKYVGLGALPGEYQTSQEGYRTFAKKVSETALV 60 VICATH P ++++ + D + + ++NC+Y ALP + K + + + Sbjct: 61 VICATHEPNEQIIKNTDEVINKLNIFNCEY---SALPYPLNVDMKNLEEIDKFIEDINIA 117 Query: 61 LKQKH--GLQFVYHNHDFEFERLDGVTGLEVLLQEADPAAFDFELDLYWVQAGGGSPVDW 118 + H G YHNH EF+++ LE + + D E D+YW+Q GG +P+ W Sbjct: 118 GSKFHAEGKVLCYHNHALEFQKVQNEIILERIYKNTDSRFIQGEPDIYWIQKGGQNPLMW 177 Query: 119 IHRVKDRMRVVHLKDMAVVA-RKAEFAEIGQGNMNYPAIIEACRETGVEWFVVEQDVCRR 177 ++ RM ++HLKD ++ +++ FAE+G GN++ I++ ++G +W++VEQD C Sbjct: 178 CKKLDQRMPLLHLKDFIMINDQESFFAEVGLGNLDIKNIVKTATDSGCKWYIVEQDECNG 237 Query: 178 DPFESLKISLDYL 190 DPF+SL+IS + L Sbjct: 238 DPFDSLQISYNNL 250 >ref|NP_623524.1| Sugar phosphate isomerases/epimerases [Thermoanaerobacter tengcongensis] gb|AAM25128.1| Sugar phosphate isomerases/epimerases [Thermoanaerobacter tengcongensis] Length = 248 Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 104/192 (54%), Gaps = 6/192 (3%) Query: 3 CATHIPWDRLVNDLDALAAEHKLWNCKYVGLGALPGEYQTSQEGYRTFAKKVSETALVLK 62 +H+ + L DL+ + +Y+ PG S+E Y AK +E K Sbjct: 59 AGSHVGIELLKKDLNGVLEYSLEIGNRYI---VCPGVPYKSKEDYIEMAKFFNEVGERCK 115 Query: 63 QKHGLQFVYHNHDFEFERLDGVTGLEVLLQEADPAAFDFELDLYWVQAGGGSPVDWIHRV 122 +K GL F YHNH EFE DG GL++L + D + E+D+YWV+ G P++++ + Sbjct: 116 EK-GLIFCYHNHAHEFEIYDGEYGLDILFKNTDKESVKAEIDVYWVKYAGVDPLEYLKKF 174 Query: 123 KDRMRVVHLKDMAVVARKAEFAEIGQGNMNYPAIIEACRETGVEWFVVEQDVCRRDPFES 182 R+ ++HLKDM R EIG G +++ I++ E GVEW +VEQD C+R P ES Sbjct: 175 SGRLPLIHLKDMDGKDRSN--TEIGNGIIDFKKIVKVAEENGVEWLIVEQDECKRSPLES 232 Query: 183 LKISLDYLHTLL 194 KISL+ L +L Sbjct: 233 AKISLENLRRIL 244 >ref|NP_244212.1| BH3346~unknown conserved protein in others [Bacillus halodurans] pir||B84068 hypothetical protein BH3346 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07065.1| BH3346~unknown conserved protein in others [Bacillus halodurans] Length = 241 Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 15/196 (7%) Query: 1 VICATHIPWDRLVNDLDALAAEHKLWNCKYVGLGALPGEYQTSQEGYRTFAKKVSETALV 60 V ++H+ +RL N LD + +H C + L E QT+ GY+ + E Sbjct: 59 VPVSSHVALERLENQLDDVIDQHLRLGCHTIYCPYLEEERQTAT-GYKELITSLKEIQKK 117 Query: 61 LKQKHGLQFVYHNHDFEF--ERLDGVTGLEVLLQEADPAAFDFELDLYWVQAGGGSPVDW 118 L++K G+ F YH+HDFE +L+ + + LL E LD+YW+Q G PV+W Sbjct: 118 LEKK-GISFGYHHHDFELYSNQLEAILSIPSLLAE---------LDVYWLQKAGQDPVEW 167 Query: 119 IHRVKDRMRVVHLKDMAVVARKAEFAEIGQGNMNYPAIIEACRETGVEWFVVEQDVCRRD 178 + R K ++R VHLKDM ++ FA +G G +N AI+E+ + VEW++VEQD D Sbjct: 168 VSRYKHKVRHVHLKDMTNDDQEF-FAPVGTGKINIDAILESST-SFVEWWIVEQDDGEGD 225 Query: 179 PFESLKISLDYLHTLL 194 P ++ S Y++ L Sbjct: 226 PLVWIEKSYTYVNERL 241 >gb|EAD50410.1| unknown [environmental sequence] Length = 267 Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 23/206 (11%) Query: 8 PWDRLVNDLDALAAEHKLWNCKYVGLGALPGEYQTSQEGYRTFAKKVSETALVLKQKHGL 67 P D L + + + + K + + L LP +Y ++ F + A L + HG+ Sbjct: 56 PSDALTTNFNKIVDDCKTLDTDLLRLPMLPFDYLGNRIKALEFIARAEVMAARLAE-HGI 114 Query: 68 QFVYHNHDFEFERLDGVTGLEVLLQEADPAAFDFELDLYWVQAGGGSPVDWIHRVKDRMR 127 + YHNH EFER +G ++++ + FELD++W+Q GG +P+ +I + R++ Sbjct: 115 ELYYHNHHHEFERYEGKYLMDIIKDSTE--RLGFELDVHWIQRGGENPITYIQQFAGRIK 172 Query: 128 VVHLKD-------------------MAVVARKAEFAEIGQGNMNYPAIIEACRETGVEWF 168 ++HLKD +A +FAE+G+GN+ IIE G E+F Sbjct: 173 LIHLKDYRIKIDLSMLEGELTYEKIVAAFDGAVQFAEVGEGNLPIKKIIETGFACGSEYF 232 Query: 169 VVEQD-VCRRDPFESLKISLDYLHTL 193 +VEQD + RDPF+ L S D L+ L Sbjct: 233 LVEQDFLYNRDPFDCLITSRDNLYKL 258 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 298,604,118 Number of extensions: 11457651 Number of successful extensions: 26721 Number of sequences better than 1.0e-05: 58 Number of HSP's gapped: 26651 Number of HSP's successfully gapped: 58 Length of query: 194 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 75 Effective length of database: 434,140,797 Effective search space: 32560559775 Effective search space used: 32560559775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)