BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0029.p
         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAI39923.1| unknown [environmental sequence]                        59   4e-08
gb|EAH16381.1| unknown [environmental sequence]                        55   5e-07

>gb|EAI39923.1| unknown [environmental sequence]
          Length = 256

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 38/52 (73%)

Query: 1  MKTSTIAAQMYTLREFTQTPEGLRESFLKVKDIGYQAVQVSGIGPIDPQLVK 52
          MK + IA  +YT+R+F Q  + L ES  K+K+IGY ++Q+SG+G I+P+ +K
Sbjct: 1  MKINQIAVTLYTVRDFCQNEKDLFESLKKIKNIGYSSIQISGVGLINPKTIK 52


>gb|EAH16381.1| unknown [environmental sequence]
          Length = 223

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 1  MKTSTIAAQMYTLREFTQTPEGLRESFLKVKDIGYQAVQVSGIGPIDPQLVKQ 53
          MK + IA  +YT+R+F Q  + L ES  K+K+IGY ++Q+SG+  I P+ +K+
Sbjct: 1  MKINQIAVTLYTVRDFCQNEKDLFESLKKIKNIGYNSIQISGVDLIHPKTIKR 53


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.133    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 68,456,806
Number of extensions: 1736498
Number of successful extensions: 4334
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4334
Number of HSP's successfully gapped: 2
Length of query: 59
Length of database: 757,237,578
Length adjustment: 31
Effective length of query: 28
Effective length of database: 673,069,509
Effective search space: 18845946252
Effective search space used: 18845946252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)